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1.
Biochem Biophys Res Commun ; 682: 343-348, 2023 11 19.
Artigo em Inglês | MEDLINE | ID: mdl-37837755

RESUMO

Antifreeze proteins (AFPs) are multifunctional polypeptides that adsorb onto ice crystals to inhibit their growth and onto cells to protect them from nonfreezing hypothermic damage. However, the mechanism by which AFP exerts its hypothermic cell protective (HCP) function remains uncertain. Here, we assessed the HCP function of three types of fish-derived AFPs (type I, II, and III AFPs) against human T-lymphoblastic lymphoma by measuring the survival rate (%) of the cells after preservation at 4 °C for 24 h. All AFPs improved the survival rate in a concentration-dependent manner, although the HCP efficiency was inferior for type III AFP compared to other AFPs. In addition, after point mutations were introduced into the ice-binding site (IBS) of a type III AFP, HCP activity was dramatically increased, suggesting that the IBS of AFP is involved in cell adsorption. Significantly, high HCP activity was observed for a mutant that exhibited poorer antifreeze activity, indicating that AFP exerts HCP- and ice-binding functions through a different mechanism. We next incubated the cells in an AFP-containing solution, replaced it with pure EC solution, and then preserved the cells, showing that no significant reduction in the cell survival rate occurred for type I and II AFPs even after replacement. Thus, these AFPs irreversibly bind to the cells at 4 °C, and only tightly adsorbed AFP molecules contribute towards the cell-protection function.


Assuntos
Gelo , alfa-Fetoproteínas , Animais , Humanos , Sítios de Ligação , Proteínas Anticongelantes/genética , Proteínas Anticongelantes/química , Proteínas Anticongelantes/metabolismo , Fenômenos Biofísicos , Proteínas de Peixes/genética
2.
FEBS Lett ; 597(4): 538-546, 2023 02.
Artigo em Inglês | MEDLINE | ID: mdl-36460826

RESUMO

Antifreeze proteins (AFPs) protect organisms from freezing by binding to ice crystals to prevent their growth. Here, we have investigated how the area of an AFP's ice-binding site (IBS) changes its antifreeze activity. The polyproline type II helical bundle fold of the 9.6-kDa springtail (Collembola) AFP from Granisotoma rainieri (a primitive arthropod) facilitates changes to both IBS length and width. A one quarter decrease in area reduced activity to less than 10%. A one quarter increase in IBS width, through the addition of a single helix, tripled antifreeze activity. However, increasing IBS length by a similar amount actually reduced activity. Expanding the IBS area can greatly increase antifreeze activity but needs to be evaluated by experimentation on a case-by-case basis.


Assuntos
Proteínas Anticongelantes , Gelo , alfa-Fetoproteínas , Proteínas Anticongelantes/química , Proteínas Anticongelantes/genética , Proteínas Anticongelantes/metabolismo , Sítios de Ligação , Engenharia de Proteínas
3.
Protein J ; 41(2): 304-314, 2022 04.
Artigo em Inglês | MEDLINE | ID: mdl-35366124

RESUMO

Ice-binding proteins are expressed in the cells of some cold adapted organisms, helping them to survive at extremely low temperatures. One of the problems in studying such proteins is the difficulty of their isolation and purification. For example, eight cysteine residues in the cfAF (antifreeze protein from the eastern spruce budworm Choristoneura fumiferana) form intermolecular bridges during the overexpression of this protein. This impedes the process of the protein purification dramatically. To overcome this issue, in this work, we designed a mutant form of the ice-binding protein cfAFP, which is much easier to isolate that the wild-type protein. The mutant form named mIBP83 did not lose the ability to bind to ice surface. Besides, observation of the processes of freezing and melting of ice in the presence of mIBP83 showed that this protein affects the process of ice melting, increasing its melting temperature, and does not decrease the water freezing temperature.


Assuntos
Gelo , Mariposas , Animais , Proteínas Anticongelantes/química , Proteínas Anticongelantes/genética , Proteínas Anticongelantes/metabolismo , Proteínas de Transporte , Congelamento , Mariposas/química , Mariposas/genética , Mariposas/metabolismo
4.
Environ Entomol ; 51(1): 167-181, 2022 02 16.
Artigo em Inglês | MEDLINE | ID: mdl-34897398

RESUMO

Dendroctonus armandi (Tsai and Li) (Coleoptera: Curculionidae: Scolytinae) is considered to be the most destructive forest pest in the Qinling and Bashan Mountains of China. Low winter temperatures limit insect's populations, distribution, activity, and development. Insects have developed different strategies such as freeze-tolerance and freeze-avoidance to survive in low temperature conditions. In the present study, we used gene cloning, real-time polymerase chain reaction (PCR), RNA interference (RNAi), and heterologous expression to study the function of the D. armandi antifreeze protein gene (DaAFP). We cloned the 800 bp full-length cDNA encoding 228 amino acids of DaAFP and analyzed its structure using bioinformatics analysis. The DaAFP amino acid sequence exhibited 24-86% similarity with other insect species. The expression of DaAFP was high in January and in the larvae, head, and midgut of D. armandi. In addition, the expression of DaAFP increased with decreasing temperature and increasing exposure time. RNAi analysis also demonstrated that AFP plays an important role in the cold tolerance of overwintering larvae. The thermal hysteresis and antifreeze activity assay of DaAFP and its mutants indicated that the more regular the DaAFP threonine-cystine-threonine (TXT) motif, the stronger the antifreeze activity. These results suggest that DaAFP plays an essential role as a biological cryoprotectant in overwintering D. armandi larvae and provides a theoretical basis for new pest control methods.


Assuntos
Besouros , Gorgulhos , Animais , Proteínas Anticongelantes/genética , Proteínas Anticongelantes/metabolismo , Resposta ao Choque Frio , Besouros/genética , Larva/genética
5.
Proc Natl Acad Sci U S A ; 115(21): 5456-5461, 2018 05 22.
Artigo em Inglês | MEDLINE | ID: mdl-29735675

RESUMO

Polypentagonal water networks were recently observed in a protein capable of binding to ice crystals, or ice-binding protein (IBP). To examine such water networks and clarify their role in ice-binding, we determined X-ray crystal structures of a 65-residue defective isoform of a Zoarcidae-derived IBP (wild type, WT) and its five single mutants (A20L, A20G, A20T, A20V, and A20I). Polypentagonal water networks composed of ∼50 semiclathrate waters were observed solely on the strongest A20I mutant, which appeared to include a tetrahedral water cluster exhibiting a perfect position match to the [Formula: see text] first prism plane of a single ice crystal. Inclusion of another symmetrical water cluster in the polypentagonal network showed a perfect complementarity to the waters constructing the [Formula: see text] pyramidal ice plane. The order of ice-binding strength was A20L < A20G < WT < A20T < A20V < A20I, where the top three mutants capable of binding to the first prism and the pyramidal ice planes commonly contained a bifurcated γ-CH3 group. These results suggest that a fine-tuning of the surface of Zoarcidae-derived IBP assisted by a side-chain group regulates the holding property of its polypentagonal water network, the function of which is to freeze the host protein to specific ice planes.


Assuntos
Proteínas Anticongelantes/metabolismo , Proteínas de Transporte/metabolismo , Proteínas de Peixes/metabolismo , Congelamento , Gelo/análise , Água/química , Animais , Proteínas Anticongelantes/química , Proteínas Anticongelantes/genética , Sítios de Ligação , Fenômenos Biofísicos , Proteínas de Transporte/química , Proteínas de Transporte/genética , Cristalografia por Raios X , Proteínas de Peixes/química , Proteínas de Peixes/genética , Peixes/metabolismo , Mutação , Ligação Proteica , Conformação Proteica , Isoformas de Proteínas , Água/metabolismo
6.
Microb Cell Fact ; 16(1): 138, 2017 Aug 07.
Artigo em Inglês | MEDLINE | ID: mdl-28784139

RESUMO

BACKGROUND: Antifreeze proteins (AFPs) production is a survival strategy of psychrophiles in ice. These proteins have potential in frozen food industry avoiding the damage in the structure of animal or vegetal foods. Moreover, there is not much information regarding the interaction of Antarctic bacterial AFPs with ice, and new determinations are needed to understand the behaviour of these proteins at the water/ice interface. RESULTS: Different Antarctic places were screened for antifreeze activity and microorganisms were selected for the presence of thermal hysteresis in their crude extracts. Isolates GU1.7.1, GU3.1.1, and AFP5.1 showed higher thermal hysteresis and were characterized using a polyphasic approach. Studies using cucumber and zucchini samples showed cellular protection when samples were treated with partially purified AFPs or a commercial AFP as was determined using toluidine blue O and neutral red staining. Additionally, genome analysis of these isolates revealed the presence of genes that encode for putative AFPs. Deduced amino acids sequences from GU3.1.1 (gu3A and gu3B) and AFP5.1 (afp5A) showed high similarity to reported AFPs which crystal structures are solved, allowing then generating homology models. Modelled proteins showed a triangular prism form similar to ß-helix AFPs with a linear distribution of threonine residues at one side of the prism that could correspond to the putative ice binding side. The statistically best models were used to build a protein-water system. Molecular dynamics simulations were then performed to compare the antifreezing behaviour of these AFPs at the ice/water interface. Docking and molecular dynamics simulations revealed that gu3B could have the most efficient antifreezing behavior, but gu3A could have a higher affinity for ice. CONCLUSIONS: AFPs from Antarctic microorganisms GU1.7.1, GU3.1.1 and AFP5.1 protect cellular structures of frozen food showing a potential for frozen food industry. Modeled proteins possess a ß-helix structure, and molecular docking analysis revealed the AFP gu3B could be the most efficient AFPs in order to avoid the formation of ice crystals, even when gu3A has a higher affinity for ice. By determining the interaction of AFPs at the ice/water interface, it will be possible to understand the process of adaptation of psychrophilic bacteria to Antarctic ice.


Assuntos
Proteínas Anticongelantes/metabolismo , Bactérias/metabolismo , Proteínas de Bactérias/metabolismo , Sequência de Aminoácidos , Regiões Antárticas , Proteínas Anticongelantes/química , Proteínas Anticongelantes/genética , Bactérias/isolamento & purificação , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Sítios de Ligação , Cucurbita/metabolismo , Cucurbitaceae/metabolismo , DNA Bacteriano/química , DNA Bacteriano/isolamento & purificação , DNA Bacteriano/metabolismo , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Estrutura Terciária de Proteína , Alinhamento de Sequência , Análise de Sequência de DNA , Sequenciamento Completo do Genoma
7.
Proc Natl Acad Sci U S A ; 114(9): 2241-2246, 2017 02 28.
Artigo em Inglês | MEDLINE | ID: mdl-28193869

RESUMO

The burial of hydrophobic side chains in a protein core generally is thought to be the major ingredient for stable, cooperative folding. Here, we show that, for the snow flea antifreeze protein (sfAFP), stability and cooperativity can occur without a hydrophobic core, and without α-helices or ß-sheets. sfAFP has low sequence complexity with 46% glycine and an interior filled only with backbone H-bonds between six polyproline 2 (PP2) helices. However, the protein folds in a kinetically two-state manner and is moderately stable at room temperature. We believe that a major part of the stability arises from the unusual match between residue-level PP2 dihedral angle bias in the unfolded state and PP2 helical structure in the native state. Additional stabilizing factors that compensate for the dearth of hydrophobic burial include shorter and stronger H-bonds, and increased entropy in the folded state. These results extend our understanding of the origins of cooperativity and stability in protein folding, including the balance between solvent and polypeptide chain entropies.


Assuntos
Proteínas Anticongelantes/química , Proteínas de Artrópodes/química , Glicina/química , Peptídeos/química , Sequência de Aminoácidos , Animais , Proteínas Anticongelantes/genética , Proteínas Anticongelantes/metabolismo , Proteínas de Artrópodes/genética , Proteínas de Artrópodes/metabolismo , Cristalografia por Raios X , Expressão Gênica , Glicina/metabolismo , Ligação de Hidrogênio , Interações Hidrofóbicas e Hidrofílicas , Cinética , Modelos Moleculares , Peptídeos/metabolismo , Dobramento de Proteína , Domínios e Motivos de Interação entre Proteínas , Estabilidade Proteica , Estrutura Secundária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Sifonápteros/química , Termodinâmica
8.
PLoS One ; 11(4): e0154056, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27097164

RESUMO

Many microorganisms in Antarctica survive in the cold environment there by producing ice-binding proteins (IBPs) to control the growth of ice around them. An IBP from the Antarctic freshwater microalga, Chloromonas sp., was identified and characterized. The length of the Chloromonas sp. IBP (ChloroIBP) gene was 3.2 kb with 12 exons, and the molecular weight of the protein deduced from the ChloroIBP cDNA was 34.0 kDa. Expression of the ChloroIBP gene was up- and down-regulated by freezing and warming conditions, respectively. Western blot analysis revealed that native ChloroIBP was secreted into the culture medium. This protein has fifteen cysteines and is extensively disulfide bonded as shown by in-gel mobility shifts between oxidizing and reducing conditions. The open-reading frame of ChloroIBP was cloned and over-expressed in Escherichia coli to investigate the IBP's biochemical characteristics. Recombinant ChloroIBP produced as a fusion protein with thioredoxin was purified by affinity chromatography and formed single ice crystals of a dendritic shape with a thermal hysteresis activity of 0.4±0.02°C at a concentration of 5 mg/ml. In silico structural modeling indicated that the three-dimensional structure of ChloroIBP was that of a right-handed ß-helix. Site-directed mutagenesis of ChloroIBP showed that a conserved region of six parallel T-X-T motifs on the ß-2 face was the ice-binding region, as predicted from the model. In addition to disulfide bonding, hydrophobic interactions between inward-pointing residues on the ß-1 and ß-2 faces, in the region of ice-binding motifs, were crucial to maintaining the structural conformation of ice-binding site and the ice-binding activity of ChloroIBP.


Assuntos
Proteínas Anticongelantes/química , Clorófitas/química , Cisteína/química , Gelo/análise , Microalgas/química , Proteínas de Plantas/química , Sequência de Aminoácidos , Regiões Antárticas , Proteínas Anticongelantes/genética , Clorófitas/genética , Clonagem Molecular , Cristalografia por Raios X , Cisteína/genética , Escherichia coli/genética , Microalgas/genética , Simulação de Dinâmica Molecular , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Filogenia , Proteínas de Plantas/genética , Conformação Proteica , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , Alinhamento de Sequência , Regulação para Cima
9.
Gene ; 539(1): 132-40, 2014 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-24502990

RESUMO

Antifreeze proteins are a class of polypeptides produced by certain animals, plants, fungi and bacteria that permit their survival under the subzero environments. Ammopiptanthus nanus is the unique evergreen broadleaf bush endemic to the Mid-Asia deserts. It survives at the west edge of the Tarim Basin from the disappearance of the ancient Mediterranean in the Tertiary Period. Its distribution region is characterized by the arid climate and extreme temperatures, where the extreme temperatures range from -30 °C to 40 °C. In the present study, the antifreeze protein gene AnAFP of A. nanus was used to transform Escherichia coli and tobacco, after bioinformatics analysis for its possible function. The transformed E. coli strain expressed the heterologous AnAFP gene under the induction of isopropyl ß-D-thiogalactopyranoside, and demonstrated significant enhancement of cold tolerance. The transformed tobacco lines expressed the heterologous AnAFP gene in response to cold stress, and showed a less change of relative electrical conductivity under cold stress, and a less wilting phenotype after 16 h of -3 °C cold stress and thawing for 1h than the untransformed wild-type plants. All these results imply the potential value of the AnAFP gene to be used in genetic modification of commercially important crops for improvement of cold tolerance.


Assuntos
Proteínas Anticongelantes/genética , Resposta ao Choque Frio/genética , Escherichia coli/genética , Fabaceae/genética , Nicotiana/genética , Adaptação Fisiológica/genética , Proteínas Anticongelantes/biossíntese , Proteínas Anticongelantes/metabolismo , Temperatura Baixa/efeitos adversos , Escherichia coli/citologia , Escherichia coli/metabolismo , Fabaceae/metabolismo , Congelamento , Regulação da Expressão Gênica de Plantas , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Plantas Geneticamente Modificadas/genética , Plantas Geneticamente Modificadas/crescimento & desenvolvimento , Regiões Promotoras Genéticas , Nicotiana/citologia , Nicotiana/metabolismo , Transformação Genética
10.
BMC Genomics ; 14: 815, 2013 Nov 21.
Artigo em Inglês | MEDLINE | ID: mdl-24261877

RESUMO

BACKGROUND: Diapause or developmental arrest, is one of the major adaptations that allows mites and insects to survive unfavorable conditions. Diapause evokes a number of physiological, morphological and molecular modifications. In general, diapause is characterized by a suppression of the metabolism, change in behavior, increased stress tolerance and often by the synthesis of cryoprotectants. At the molecular level, diapause is less studied but characterized by a complex and regulated change in gene-expression. The spider mite Tetranychus urticae is a serious polyphagous pest that exhibits a reproductive facultative diapause, which allows it to survive winter conditions. Diapausing mites turn deeply orange in color, stop feeding and do not lay eggs. RESULTS: We investigated essential physiological processes in diapausing mites by studying genome-wide expression changes, using a custom built microarray. Analysis of this dataset showed that a remarkable number, 11% of the total number of predicted T. urticae genes, were differentially expressed. Gene Ontology analysis revealed that many metabolic pathways were affected in diapausing females. Genes related to digestion and detoxification, cryoprotection, carotenoid synthesis and the organization of the cytoskeleton were profoundly influenced by the state of diapause. Furthermore, we identified and analyzed an unique class of putative antifreeze proteins that were highly upregulated in diapausing females. We also further confirmed the involvement of horizontally transferred carotenoid synthesis genes in diapause and different color morphs of T. urticae. CONCLUSIONS: This study offers the first in-depth analysis of genome-wide gene-expression patterns related to diapause in a member of the Chelicerata, and further adds to our understanding of the overall strategies of diapause in arthropods.


Assuntos
Proteínas de Artrópodes/genética , Tetranychidae/fisiologia , Transcriptoma , Adaptação Fisiológica/genética , Animais , Proteínas Anticongelantes/química , Proteínas Anticongelantes/genética , Proteínas Anticongelantes/metabolismo , Proteínas de Artrópodes/química , Proteínas de Artrópodes/metabolismo , Comportamento Alimentar , Feminino , Perfilação da Expressão Gênica , Regulação da Expressão Gênica , Ontologia Genética , Genoma , Redes e Vias Metabólicas/genética , Modelos Moleculares , Análise de Sequência com Séries de Oligonucleotídeos , Estrutura Secundária de Proteína , Receptores Acoplados a Proteínas G/genética , Receptores Acoplados a Proteínas G/metabolismo , Reprodução/genética , Estações do Ano
11.
Zoolog Sci ; 30(8): 658-62, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23915159

RESUMO

Antifreeze proteins (AFPs) refer to a class of polypeptides that are produced by certain vertebrates, plants, fungi, and bacteria and which permit their survival in subzero environments. In this study, we report the molecular cloning, sequence analysis and three-dimensional structure of the axolotl antifreeze-like protein (AFLP) by homology modeling of the first caudate amphibian AFLP. We constructed a full-length spleen cDNA library of axolotl (Ambystoma mexicanum). An EST having highest similarity (∼42%) with freeze-responsive liver protein Li16 from Rana sylvatica was identified, and the full-length cDNA was subsequently obtained by RACE-PCR. The axolotl antifreeze-like protein sequence represents an open reading frame for a putative signal peptide and the mature protein composed of 93 amino acids. The calculated molecular mass and the theoretical isoelectric point (pl) of this mature protein were 10128.6 Da and 8.97, respectively. The molecular characterization of this gene and its deduced protein were further performed by detailed bioinformatics analysis. The three-dimensional structure of current AFLP was predicted by homology modeling, and the conserved residues required for functionality were identified. The homology model constructed could be of use for effective drug design. This is the first report of an antifreeze-like protein identified from a caudate amphibian.


Assuntos
Proteínas Anticongelantes/metabolismo , Urodelos/metabolismo , Sequência de Aminoácidos , Animais , Proteínas Anticongelantes/química , Proteínas Anticongelantes/genética , Sequência de Bases , Clonagem Molecular , DNA Complementar/genética , Regulação da Expressão Gênica , Modelos Moleculares , Conformação Proteica , Alinhamento de Sequência , Urodelos/genética
12.
J Mol Model ; 18(1): 229-37, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21523554

RESUMO

Mutations in proteins introduce structural changes and influence biological activity: the specific effects depend on the location of the mutation. The simple method proposed in the present paper is based on a two-step model of in silico protein folding. The structure of the first intermediate is assumed to be determined solely by backbone conformation. The structure of the second one is assumed to be determined by the presence of a hydrophobic center. The comparable structural analysis of the set of mutants is performed to identify the mutant-induced structural changes. The changes of the hydrophobic core organization measured by the divergence entropy allows quantitative comparison estimating the relative structural changes upon mutation. The set of antifreeze proteins, which appeared to represent the hydrophobic core structure accordant with "fuzzy oil drop" model was selected for analysis.


Assuntos
Proteínas Anticongelantes/ultraestrutura , Modelos Moleculares , Dobramento de Proteína , Proteínas Anticongelantes/genética , Simulação por Computador , Interações Hidrofóbicas e Hidrofílicas , Mutação , Conformação Proteica , Proteínas/química
13.
Biochemistry ; 49(11): 2593-603, 2010 Mar 23.
Artigo em Inglês | MEDLINE | ID: mdl-20158269

RESUMO

The snow flea (Hypogastrum harveyi) is protected from freezing at sub-zero temperatures by a glycine-rich antifreeze protein (AFP) that binds to seed ice crystals and prevents them from growing larger. This AFP is hyperactive and comprises two isoforms [Graham, L. A., and Davies, P. L. (2005) Science 310, 461]. The larger isoform (15.7 kDa) exhibits several-fold higher activity than the smaller isoform (6.5 kDa), although it is considerably less abundant. To establish the molecular basis for this difference in activity, we determined the sequence of the large isoform. The primary sequences of these two isoforms are surprisingly divergent. However, both contain tripeptide repeats and turn motifs that enabled us to build a three-dimensional model of the large isoform based upon the six-polyproline helix structure of the small isoform. Our model contains 13 polyproline type II helices connected by proline-containing loops stacked into two flat sheets oriented antiparallel to one another. The structure is strictly amphipathic, with a hydrophilic surface on one side and a hydrophobic, putative ice-binding surface on the other. The putative ice-binding site is approximately twice as large in area as that of the small isoform, providing an explanation for the difference in activity that is consistent with other examples noted. By tagging the recombinant AFP with green fluorescent protein, we observed its binding to multiple planes of ice, especially the basal plane. This finding supports the correlation between AFP hyperactivity and basal plane binding first observed with spruce budworm AFP.


Assuntos
Proteínas Anticongelantes/química , Proteínas Anticongelantes/metabolismo , Artrópodes , Sequência de Aminoácidos , Animais , Proteínas Anticongelantes/genética , Proteínas Anticongelantes/isolamento & purificação , Artrópodes/química , Glicina , Interações Hidrofóbicas e Hidrofílicas , Modelos Moleculares , Dados de Sequência Molecular , Peso Molecular , Prolina , Isoformas de Proteínas/química , Isoformas de Proteínas/genética , Isoformas de Proteínas/isolamento & purificação , Isoformas de Proteínas/metabolismo , Estrutura Secundária de Proteína
14.
FEBS J ; 277(2): 394-403, 2010 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-20030710

RESUMO

Antifreeze proteins are structurally diverse polypeptides that have thermal hysteresis activity and have been discovered in many cold-adapted organisms. Of these, fungal antifreeze protein has been purified and partially characterized only in a species of psychrophilic basidiomycete, Typhula ishikariensis. Here we report a new fungal antifreeze protein from another psychrophile, Antarctomyces psychrotrophicus. We examined its biochemical properties and thermal hysteresis activity, and compared them with those of the T. ishikariensis antifreeze protein. The antifreeze protein from A. psychrotrophicus was purified and identified as an extracellular protein of approximately 28 kDa, which halved in size following digestion with glycosidase. The A. psychrotrophicus antifreeze protein generated bipyramidal ice crystals and exhibited thermal hysteresis activity (for example thermal hysteresis = 0.42 degrees C for a 0.48 mM solution) similar to that of fish antifreeze proteins, while a unique rugged pattern was created on the facets of the ice bipyramid. The thermal hysteresis activity of the A. psychrotrophicus antifreeze protein was maximized under alkaline conditions, while that of the T. ishikariensis antifreeze protein was greatest under acidic conditions. The T. ishikariensis antifreeze protein exhibited a bursting ice growth normal to the c-axis of the ice crystal and high thermal hysteresis activity (approximately 2 degrees C), as in the case of insect hyperactive antifreeze proteins. From these results, we speculate that the A. psychrotrophicus antifreeze protein is very different from the T. ishikariensis antifreeze protein, and that these two psychrophiles have evolved from different genes.


Assuntos
Proteínas Anticongelantes/metabolismo , Ascomicetos/metabolismo , Basidiomycota/metabolismo , Proteínas Fúngicas/metabolismo , Sequência de Aminoácidos , Regiões Antárticas , Proteínas Anticongelantes/genética , Proteínas Anticongelantes/isolamento & purificação , Ascomicetos/genética , Ascomicetos/isolamento & purificação , Sequência de Bases , Basidiomycota/genética , Basidiomycota/isolamento & purificação , Clima Frio , Cristalização , Primers do DNA/genética , DNA Fúngico/genética , Proteínas Fúngicas/genética , Proteínas Fúngicas/isolamento & purificação , Gelo , Camada de Gelo/microbiologia , Dados de Sequência Molecular , Homologia de Sequência de Aminoácidos , Especificidade da Espécie
15.
Plant Cell Rep ; 27(8): 1349-58, 2008 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-18528694

RESUMO

To elucidate the function of antifreeze protein from Microdera puntipennis dzhungarica for freezing stress tolerance in plant, the construct of MpAFP149 gene with the signal peptide sequence responsible for secreting the native MpAFP149 into the apoplast space under control of a cauliflower mosaic virus 35S promoter was introduced into tobacco by Agrobacterium tumefaciens-mediated transformation. The observation of immunogold localization by TEM (transmission electron microscope) showed that the heterologous MpAFP149 protein was mainly distributed on the cell wall in apoplast of the transgenic tobacco plant. T1 generation transgenic tobacco plants displayed a more frost resistant phenotype and kept the lower ion leakage ratio and MDA (malondialdehyde) content in the leaves compared with wild-type ones at -1 degrees C for 3 days. The results showed that MpAFP149 provided protection and conferred cold tolerance to transgenic tobacco plant during freezing stress.


Assuntos
Proteínas Anticongelantes/genética , Congelamento , Nicotiana/genética , Plantas Geneticamente Modificadas/genética , Adaptação Fisiológica/genética , Adaptação Fisiológica/fisiologia , Animais , Proteínas Anticongelantes/fisiologia , Caulimovirus/genética , Besouros/genética , Besouros/metabolismo , Regulação da Expressão Gênica de Plantas , Proteínas de Insetos/genética , Proteínas de Insetos/fisiologia , Microscopia Eletrônica de Transmissão , Plantas Geneticamente Modificadas/fisiologia , Plantas Geneticamente Modificadas/ultraestrutura , Regiões Promotoras Genéticas/genética , Nicotiana/fisiologia , Nicotiana/ultraestrutura
16.
Crit Rev Biotechnol ; 28(1): 57-82, 2008.
Artigo em Inglês | MEDLINE | ID: mdl-18322856

RESUMO

Antifreeze proteins (AFPs) are a group of proteins that protect organisms from deep freezing temperatures and are expressed in vertebrates, invertebrates, plants, bacteria, and fungi. The nuclear magnetic resonance, x-ray structure, and many spectroscopic studies with AFPs have been instrumental in determining the structure-function relationship. Mutational studies have indicated the importance of hydrophobic residues in ice binding. Various studies have pointed out that the mechanism of AFP action is through its adsorption on the ice surface, which leads to a curved surface, preventing further growth of ice by the "Kelvin effect." The AFPs have potential industrial, medical, and agricultural application in different fields, such as food technology, preservation of cell lines, organs, cryosurgery, and cold hardy transgenic plants and animals. However, the applications of AFPs are marred by high cost due to low yield. This review deals with the source and properties of AFPs from an angle of their application and their potential. The possibility of production using different molecular biological techniques, which will help increase the yield, is also dealt with.


Assuntos
Proteínas Anticongelantes/química , Biotecnologia/tendências , Adsorção , Animais , Proteínas Anticongelantes/genética , Biônica/tendências , Congelamento , Engenharia Genética/tendências , Humanos , Interações Hidrofóbicas e Hidrofílicas , Gelo , Ligação Proteica , Relação Estrutura-Atividade
17.
Protein Expr Purif ; 48(2): 243-52, 2006 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-16542851

RESUMO

The Tenebrio molitor thermal hysteresis protein has a cysteine content of 19%. This 84-residue protein folds as a compact beta-helix, with eight disulfide bonds buried in its core. Exposed on one face of the protein is an array of threonine residues, which constitutes the ice-binding face. Previous protocols for expression of this protein in recombinant expression systems resulted in inclusion bodies or soluble but largely inactive material. A long and laborious refolding procedure was performed to increase the fraction of active protein and isolate it from inactive fractions. We present a new protocol for production of fully folded and active T. molitor thermal hysteresis protein in bacteria, without the need for in vitro refolding. The protein coding sequence was fused to those of various carrier proteins and expressed at low temperature in a bacterial strain specially suited for production of disulfide-bonded proteins. The product, after a simple and robust purification procedure, was analyzed spectroscopically and functionally and was found to compare favorably to previously published data on refolded protein and protein obtained from its native source.


Assuntos
Proteínas Anticongelantes/química , Proteínas Anticongelantes/metabolismo , Dissulfetos/química , Escherichia coli/genética , Expressão Gênica , Dobramento de Proteína , Tenebrio/química , Sequência de Aminoácidos , Animais , Proteínas Anticongelantes/biossíntese , Proteínas Anticongelantes/genética , Dados de Sequência Molecular , Estrutura Secundária de Proteína , Tenebrio/genética
18.
Yi Chuan Xue Bao ; 32(8): 789-94, 2005 Aug.
Artigo em Chinês | MEDLINE | ID: mdl-16231732

RESUMO

To survive the freezing marine environment, the Antarctic eel pout, Lycodichthys dearborni synthesizes high concentration of type III antifreeze proteins (AFP III). In the process of characterizing the various types of AFP III mRNA present in the L. dearboni liver, a 2.87 kb mRNA encodes for multiple domains of AFP III was identified. This cDNA encodes 12 tandemly repeated segments, each translates into a 7 kD AFP III molecule plus a 9-amino acid linker. This naturally occurred and functional multimer type III antifreeze protein gene is the first of this kind being identified. The organization strongly mimics the polyprotein structure found in the genes for another type of bio-antifreezes, the antifreeze glycoprotein, AFGP. The AFP III and AFGP are compositionally and structurally completely different, and synthesized by fishes in different suborders. The presence of the similar polyprotein structures in the different types of antifreeze genes may imply a common organizational mechanism in the fish genomes for adapting to the extremely cold polar environment.


Assuntos
Proteínas Anticongelantes Tipo III/genética , Enguias/genética , Sequência de Aminoácidos , Animais , Regiões Antárticas , Proteínas Anticongelantes/genética , Sequência de Bases , DNA Complementar/química , DNA Complementar/genética , Evolução Molecular , Peixes/genética , Biblioteca Gênica , Dados de Sequência Molecular , Poliproteínas/genética , Alinhamento de Sequência , Análise de Sequência de DNA , Sequências de Repetição em Tandem
19.
Eur J Biochem ; 270(7): 1381-92, 2003 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-12653993

RESUMO

Antifreeze glycoproteins (AFGPs) constitute the major fraction of protein in the blood serum of Antarctic notothenioids and Arctic cod. Each AFGP consists of a varying number of repeating units of (Ala-Ala-Thr)n, with minor sequence variations, and the disaccharide beta-D-galactosyl-(1-->3)-alpha-N-acetyl-D-galactosamine joined as a glycoside to the hydroxyl oxygen of the Thr residues. These compounds allow the fish to survive in subzero ice-laden polar oceans by kinetically depressing the temperature at which ice grows in a noncolligative manner. In contrast to the more widely studied antifreeze proteins, little is known about the mechanism of ice growth inhibition by AFGPs, and there is no definitive model that explains their properties. This review summarizes the structural and physical properties of AFGPs and advances in the last decade that now provide opportunities for further research in this field. High field NMR spectroscopy and molecular dynamics studies have shown that AFGPs are largely unstructured in aqueous solution. While standard carbohydrate degradation studies confirm the requirement of some of the sugar hydroxyls for antifreeze activity, the importance of following structural elements has not been established: (a) the number of hydroxyls required, (b) the stereochemistry of the sugar hydroxyls (i.e. the requirement of galactose as the sugar), (c) the acetamido group on the first galactose sugar, (d) the stereochemistry of the beta-glycosidic linkage between the two sugars and the alpha-glycosidic linkage to Thr, (e) the requirement of a disaccharide for activity, and (f) the Ala and Thr residues in the polypeptide backbone. The recent successful synthesis of small AFGPs using solution methods and solid-phase chemistry provides the opportunity to perform key structure-activity studies that would clarify the important residues and functional groups required for activity. Genetic studies have shown that the AFGPs present in the two geographically and phylogenetically distinct Antarctic notothenioids and Arctic cod have evolved independently, in a rare example of convergent molecular evolution. The AFGPs exhibit concentration dependent thermal hysteresis with maximum hysteresis (1.2 degrees C at 40 mg x mL-1) observed with the higher molecular mass glycoproteins. The ability to modify the rate and shape of crystal growth and protect cellular membranes during lipid-phase transitions have resulted in identification of a number of potential applications of AFGPs as food additives, and in the cryopreservation and hypothermal storage of cells and tissues.


Assuntos
Proteínas Anticongelantes/química , Animais , Regiões Antárticas , Proteínas Anticongelantes/biossíntese , Proteínas Anticongelantes/classificação , Proteínas Anticongelantes/genética , Regiões Árticas , Metabolismo dos Carboidratos , Carboidratos/química , Peixes , Espectroscopia de Ressonância Magnética , Conformação Proteica
20.
J Biol Chem ; 277(27): 24073-80, 2002 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-11940576

RESUMO

A number of structurally diverse classes of "antifreeze" proteins that allow fish to survive in sub-zero ice-laden waters have been isolated from the blood plasma of cold water teleosts. However, despite receiving a great deal of attention, the one or more mechanisms through which these proteins act are not fully understood. In this report we have synthesized a type I antifreeze polypeptide (AFP) from the shorthorn sculpin Myoxocephalus scorpius using recombinant methods. Construction of a synthetic gene with optimized codon usage and expression as a glutathione S-transferase fusion protein followed by purification yielded milligram amounts of polypeptide with two extra residues appended to the N terminus. Circular dichroism and NMR experiments, including residual dipolar coupling measurements on a 15N-labeled recombinant polypeptide, show that the polypeptides are alpha-helical with the first four residues being more flexible than the remainder of the sequence. Both the recombinant and synthetic polypeptides modify ice growth, forming facetted crystals just below the freezing point, but display negligible thermal hysteresis. Acetylation of Lys-10, Lys-20, and Lys-21 as well as the N terminus of the recombinant polypeptide gave a derivative that displays both thermal hysteresis (0.4 degrees C at 15 mg/ml) and ice crystal faceting. These results confirm that the N terminus of wild-type polypeptide is functionally important and support our previously proposed mechanism for all type I proteins, in which the hydrophobic face is oriented toward the ice at the ice/water interface.


Assuntos
Proteínas Anticongelantes/química , Proteínas de Peixes , Gelo , Sequência de Aminoácidos , Animais , Proteínas Anticongelantes/genética , Sequência de Bases , Dicroísmo Circular , Primers do DNA , Genes Sintéticos , Espectroscopia de Ressonância Magnética , Microscopia de Vídeo , Dados de Sequência Molecular , Conformação Proteica , Proteínas Recombinantes/biossíntese , Escorpiões , Soluções
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