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1.
PLoS One ; 15(6): e0235127, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32579599

RESUMO

Repeat-induced gene silencing (RIGS) establishes the centromere structure, prevents the spread of transposons and silences transgenes, thereby limiting recombinant protein production. We previously isolated a sequence (B-3-31) that alleviates RIGS from the human genome. Here, we developed an assay system for evaluating the influence of repeat sequences on gene expression, based on in vitro ligation followed by our original gene amplification technology in animal cells. Using this assay, we found that the repeat of B-3-31, three core sequences of replication initiation regions (G5, C12, and D8) and two matrix attachment regions (AR1 and 32-3), activated the co-amplified plasmid-encoded d2EGFP gene in both human and hamster cell lines. This upregulation effect persisted for up to 82 days, which was confirmed to be repeat-induced, and was thus designated as a repeat-induced gene activation (RIGA). In clear contrast, the repeat of three bacterial sequences (lambda-phage, Amp, and ColE1) and three human retroposon sequences (Alu, 5'-untranslated region, and ORF1 of a long interspersed nuclear element) suppressed gene expression, thus reflecting RIGS. RIGS was CpG-independent. We suggest that RIGA might be associated with replication initiation. The discovery of RIGS and RIGA has implications for the repeat in mammalian genome, as well as practical value in recombinant production.


Assuntos
Inativação Gênica , Genoma Humano/genética , Regiões de Interação com a Matriz/genética , Origem de Replicação/genética , Ativação Transcricional , Animais , Sequência de Bases , Células CHO , Linhagem Celular Tumoral , Cricetinae , Cricetulus , Regulação da Expressão Gênica , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Humanos , Hibridização in Situ Fluorescente/métodos , Plasmídeos/genética , Sequências Repetitivas de Ácido Nucleico/genética , Retroelementos/genética
2.
Transgenic Res ; 29(2): 171-186, 2020 04.
Artigo em Inglês | MEDLINE | ID: mdl-31919795

RESUMO

The expression of recombinant proteins in plants is a valuable alternative to bioreactors using mammalian cell systems. Ease of scaling, and their inability to host human pathogens, enhance the use of plants to generate complex therapeutic products such as monoclonal antibodies. However, stably transformed plants expressing antibodies normally have a poor accumulation of these proteins that probably arise from the negative positional effects of their flanking chromatin. The induction of boundaries between the transgenes and the surrounding DNA using matrix attachment regions (MAR) and insulator elements may minimize these effects. With the PHB-01 antibody as a model, we demonstrated that the insertion of DNA elements, the TM2 (MAR) and M4 insulator, flanking the transcriptional cassettes that encode the light and heavy chains of the PHB-01 antibody, increased the protein accumulation that remained stable in the first plant progeny. The M4 insulator had a stronger effect than the TM2, with over a twofold increase compared to the standard construction. This effect was probably associated with an enhancer-promoter interference. Moreover, transgenic plants harboring two transcriptional units encoding for the PHB-01 heavy chain combined with both TM2 and M4 elements enhanced the accumulation of the antibody. In summary, the M4 combined with a double transcriptional unit of the heavy chain may be a suitable strategy for potentiating PHB-01 production in tobacco plants.


Assuntos
Anticorpos/metabolismo , Cadeias Pesadas de Imunoglobulinas/metabolismo , Elementos Isolantes , Regiões de Interação com a Matriz/genética , Nicotiana/genética , Proteínas Recombinantes/metabolismo , Transgenes/genética , Anticorpos/genética , Regulação da Expressão Gênica de Plantas , Cadeias Pesadas de Imunoglobulinas/genética , Cadeias Leves de Imunoglobulina/genética , Cadeias Leves de Imunoglobulina/metabolismo , Plantas Geneticamente Modificadas/genética , Plantas Geneticamente Modificadas/crescimento & desenvolvimento , Proibitinas , Regiões Promotoras Genéticas , Proteínas Recombinantes/genética , Nicotiana/crescimento & desenvolvimento
3.
Sci Rep ; 9(1): 16954, 2019 11 18.
Artigo em Inglês | MEDLINE | ID: mdl-31740706

RESUMO

Gene amplification methods play a crucial role in establishment of cells that produce high levels of recombinant protein. However, the stability of such cell lines and the level of recombinant protein produced continue to be suboptimal. Here, we used a combination of a human artificial chromosome (HAC) vector and initiation region (IR)/matrix attachment region (MAR) gene amplification method to establish stable cells that produce high levels of recombinant protein. Amplification of Enhanced green fluorescent protein (EGFP) was induced on a HAC carrying EGFP gene and IR/MAR sequences (EGFP MAR-HAC) in CHO DG44 cells. The expression level of EGFP increased approximately 6-fold compared to the original HAC without IR/MAR sequences. Additionally, anti-vascular endothelial growth factor (VEGF) antibody on a HAC (VEGF MAR-HAC) was also amplified by utilization of this IR/MAR-HAC system, and anti-VEGF antibody levels were approximately 2-fold higher compared with levels in control cells without IR/MAR. Furthermore, the expression of anti-VEGF antibody with VEGF MAR-HAC in CHO-K1 cells increased 2.3-fold compared with that of CHO DG44 cells. Taken together, the IR/MAR-HAC system facilitated amplification of a gene of interest on the HAC vector, and could be used to establish a novel cell line that stably produced protein from mammalian cells.


Assuntos
Cromossomos Artificiais Humanos , Engenharia de Proteínas/métodos , Proteínas Recombinantes/genética , Animais , Anticorpos Monoclonais/genética , Anticorpos Monoclonais/metabolismo , Células CHO , Cricetulus , Vetores Genéticos , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Humanos , Regiões de Interação com a Matriz/genética , Técnicas de Amplificação de Ácido Nucleico , Proteínas Recombinantes/metabolismo , Fator A de Crescimento do Endotélio Vascular/imunologia
4.
BMC Mol Biol ; 19(1): 15, 2018 12 04.
Artigo em Inglês | MEDLINE | ID: mdl-30514321

RESUMO

BACKGROUND: Oxidative stress is known to be involved in most of the aetiological factors of nasopharyngeal carcinoma (NPC). Cells that are under oxidative stress may undergo apoptosis. We have previously demonstrated that oxidative stress-induced apoptosis could be a potential mechanism mediating chromosome breakages in nasopharyngeal epithelial cells. Additionally, caspase-activated DNase (CAD) may be the vital player in mediating the chromosomal breakages during oxidative stress-induced apoptosis. Chromosomal breakage occurs during apoptosis and chromosome rearrangement. Chromosomal breakages tend to cluster in certain regions, such as matrix association region/scaffold attachment region (MAR/SAR). We hypothesised that oxidative stress-induced apoptosis may result in chromosome breaks preferentially at the MAR/SAR sites. The AF9 gene at 9p22 was targeted in this study because 9p22 is a deletion site commonly found in NPC. RESULTS: By using MAR/SAR recognition signature (MRS), potential MAR/SAR sites were predicted in the AF9 gene. The predicted MAR/SAR sites precisely match to the experimentally determined MAR/SARs. Hydrogen peroxide (H2O2) was used to induce apoptosis in normal nasopharyngeal epithelial cells (NP69) and NPC cells (HK1). Nested inverse polymerase chain reaction was employed to identify the AF9 gene cleavages. In the SAR region, the gene cleavage frequency of H2O2-treated cells was significantly higher than that of the non-treated cells. A few chromosomal breakages were detected within the AF9 region which was previously found to be involved in the mixed lineage leukaemia (MLL)-AF9 translocation in an acute lymphoblastic leukaemia patient. As for the non-SAR region, no significant difference in the gene cleavage frequency was found between the untreated control and H2O2-treated cells. Furthermore, H2O2-induced cleavages within the SAR region were reduced by caspase-3 inhibitor, which indirectly inhibits CAD. CONCLUSIONS: These results reaffirm our previous findings that oxidative stress-induced apoptosis could be one of the potential mechanisms underlying chromosome breakages in nasopharyngeal epithelial cells. MAR/SAR may play a vital role in defining the location of chromosomal breakages mediated by oxidative stress-induced apoptosis, where CAD is the major nuclease.


Assuntos
Sequência de Bases , Quebra Cromossômica , Células Epiteliais/metabolismo , Regiões de Interação com a Matriz/genética , Apoptose/efeitos dos fármacos , Apoptose/genética , Linhagem Celular , Humanos , Peróxido de Hidrogênio/metabolismo , Peróxido de Hidrogênio/farmacologia , Estresse Oxidativo , Mucosa Respiratória/citologia , Mucosa Respiratória/metabolismo , Análise de Sequência de DNA
5.
Hum Genomics ; 12(1): 29, 2018 06 18.
Artigo em Inglês | MEDLINE | ID: mdl-29914565

RESUMO

BACKGROUND: The mechanism underlying chromosome rearrangement in nasopharyngeal carcinoma (NPC) remains elusive. It is known that most of the aetiological factors of NPC trigger oxidative stress. Oxidative stress is a potent apoptotic inducer. During apoptosis, chromatin cleavage and DNA fragmentation occur. However, cells may undergo DNA repair and survive apoptosis. Non-homologous end joining (NHEJ) pathway has been known as the primary DNA repair system in human cells. The NHEJ process may repair DNA ends without any homology, although region of microhomology (a few nucleotides) is usually utilised by this DNA repair system. Cells that evade apoptosis via erroneous DNA repair may carry chromosomal aberration. Apoptotic nuclease was found to be associated with nuclear matrix during apoptosis. Matrix association region/scaffold attachment region (MAR/SAR) is the binding site of the chromosomal DNA loop structure to the nuclear matrix. When apoptotic nuclease is associated with nuclear matrix during apoptosis, it potentially cleaves at MAR/SAR. Cells that survive apoptosis via compromised DNA repair may carry chromosome rearrangement contributing to NPC tumourigenesis. The Abelson murine leukaemia (ABL) gene at 9q34 was targeted in this study as 9q34 is a common region of loss in NPC. This study aimed to identify the chromosome breakages and/or rearrangements in the ABL gene in cells undergoing oxidative stress-induced apoptosis. RESULTS: In the present study, in silico prediction of MAR/SAR was performed in the ABL gene. More than 80% of the predicted MAR/SAR sites are closely associated with previously reported patient breakpoint cluster regions (BCR). By using inverse polymerase chain reaction (IPCR), we demonstrated that hydrogen peroxide (H2O2)-induced apoptosis in normal nasopharyngeal epithelial and NPC cells led to chromosomal breakages within the ABL BCR that contains a MAR/SAR. Intriguingly, we detected two translocations in H2O2-treated cells. Region of microhomology was found at the translocation junctions. This observation is consistent with the operation of microhomology-mediated NHEJ. CONCLUSIONS: Our findings suggested that oxidative stress-induced apoptosis may participate in chromosome rearrangements of NPC. A revised model for oxidative stress-induced apoptosis mediating chromosome rearrangement in NPC is proposed.


Assuntos
Regiões de Interação com a Matriz/genética , Carcinoma Nasofaríngeo/genética , Proteínas Oncogênicas v-abl/genética , Estresse Oxidativo/genética , Translocação Genética , Animais , Apoptose/genética , Linhagem Celular Tumoral , Aberrações Cromossômicas , Quebra Cromossômica , Cromossomos/genética , Reparo do DNA por Junção de Extremidades/genética , Reparo do DNA/genética , Proteínas de Ligação a DNA/genética , Humanos , Peróxido de Hidrogênio/química , Camundongos , Carcinoma Nasofaríngeo/patologia
6.
PLoS One ; 12(7): e0181804, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28746399

RESUMO

Hypocotyl elongation is extensively controlled by hormone signaling networks. In particular, auxin metabolism and signaling play key roles in light-dependent hypocotyl growth. The nuclear matrix facilitates organization of DNA within the nucleus, and dynamic interactions between nuclear matrix and DNA are related to gene regulation. Conserved scaffold/matrix attachment regions (S/MARs) are anchored to the nuclear matrix by the AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED (AHL) proteins in Arabidopsis. Here, we found that ESCAROLA (ESC)/AHL27 and SUPPRESSOR OF PHYTOCHROME B-4 #3 (SOB3)/AHL29 redundantly regulate auxin biosynthesis in the control of hypocotyl elongation. The light-inducible AHL proteins bind directly to an S/MAR region of the YUCCA 9 (YUC9) promoter and suppress its expression to inhibit hypocotyl growth in light-grown seedlings. In addition, they recruit the SWI2/SNF2-RELATED 1 (SWR1) complex and promote exchange of H2A with the histone variant H2A.Z at the YUC9 locus to further elaborately control auxin biosynthesis. Consistent with these results, the long hypocotyl phenotypes of light-grown genetic mutants of the AHLs and H2A.Z-exchanging components were suppressed by potent chemical inhibitors of auxin transport and YUC enzymes. These results suggest that the coordination of matrix attachment and chromatin modification underlies auxin biosynthesis in light-dependent hypocotyl growth.


Assuntos
Trifosfato de Adenosina/metabolismo , Arabidopsis/genética , Montagem e Desmontagem da Cromatina/genética , Hipocótilo/genética , Ácidos Indolacéticos/metabolismo , Regiões de Interação com a Matriz/genética , Arabidopsis/crescimento & desenvolvimento , Arabidopsis/metabolismo , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Regulação da Expressão Gênica no Desenvolvimento/efeitos da radiação , Regulação da Expressão Gênica de Plantas/efeitos da radiação , Hipocótilo/crescimento & desenvolvimento , Hipocótilo/metabolismo , Luz , Oxigenases de Função Mista/genética , Oxigenases de Função Mista/metabolismo , Mutação , Plantas Geneticamente Modificadas , Regiões Promotoras Genéticas/genética , Ligação Proteica , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Plântula/genética , Plântula/crescimento & desenvolvimento , Plântula/metabolismo , Técnicas do Sistema de Duplo-Híbrido
7.
J Cell Physiol ; 232(6): 1295-1305, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-27627025

RESUMO

Experimental approaches to define the relationship between gene expression and nuclear matrix attachment regions (MARs) have given contrasting and method-specific results. We have developed a next generation sequencing strategy to identify MARs across the human genome (MAR-Seq). The method is based on crosslinking chromatin to its nuclear matrix attachment sites to minimize changes during biochemical processing. We used this method to compare nuclear matrix organization in MCF-10A mammary epithelial-like cells and MDA-MB-231 breast cancer cells and evaluated the results in the context of global gene expression (array analysis) and positional enrichment of gene-regulatory histone modifications (ChIP-Seq). In the normal-like cells, nuclear matrix-attached DNA was enriched in expressed genes, while in the breast cancer cells, it was enriched in non-expressed genes. In both cell lines, the chromatin modifications that mark transcriptional activation or repression were appropriately associated with gene expression. Using this new MAR-Seq approach, we provide the first genome-wide characterization of nuclear matrix attachment in mammalian cells and reveal that the nuclear matrix-associated genome is highly cell-context dependent. J. Cell. Physiol. 232: 1295-1305, 2017. © 2016 Wiley Periodicals, Inc.


Assuntos
DNA/metabolismo , Genoma Humano , Regiões de Interação com a Matriz/genética , Matriz Nuclear/metabolismo , Neoplasias da Mama/genética , Linhagem Celular , Cromatina/metabolismo , Reagentes de Ligações Cruzadas/metabolismo , Feminino , Imunofluorescência , Regulação Neoplásica da Expressão Gênica , Histonas/metabolismo , Humanos , Fases de Leitura Aberta/genética , Reprodutibilidade dos Testes
8.
Transgenic Res ; 25(2): 149-62, 2016 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-26732611

RESUMO

Transgenes in genetically modified plants are often not reliably expressed during development or in subsequent generations. Transcriptional gene silencing (TGS) as well as post-transcriptional gene silencing (PTGS) have been shown to occur in transgenic plants depending on integration pattern, copy number and integration site. In an effort to reduce position effects, to prevent read-through transcription and to provide a more accessible chromatin structure, a P35S-ß-glucuronidase (P35S-gus) transgene flanked by a scaffold/matrix attachment region from petunia (Petun-SAR), was introduced in Nicotiana tabacum plants by Agrobacterium tumefaciens mediated transformation. It was found that Petun-SAR mediates enhanced expression and copy number dependency up to 2 gene copies, but did not prevent gene silencing in transformants with multiple and rearranged gene copies. However, in contrast to the non-SAR transformants where silencing was irreversible and proceeded during long-term vegetative propagation and in progeny plants, gus expression in Petun-SAR plants was re-established in the course of development. Gene silencing was not necessarily accompanied by DNA methylation, while the gus transgene could still be expressed despite considerable CG methylation within the coding region.


Assuntos
Dosagem de Genes , Glucuronidase/genética , Nicotiana/genética , Plantas Geneticamente Modificadas/genética , Arabidopsis/genética , Metilação de DNA/genética , Expressão Gênica , Inativação Gênica , Glucuronidase/biossíntese , Regiões de Interação com a Matriz/genética , Petunia/genética , Regiões Promotoras Genéticas , Transgenes/genética
9.
Mol Biotechnol ; 57(2): 138-44, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25307181

RESUMO

High expression level and long-term expression stability are required for therapeutic protein production in mammalian cells. Three commonly used promoters from the simian virus 40 (SV40), the CHO elongation factor 1α gene (EF1α), and the human cytomegalovirus major immediate early gene (CMV) and two matrix attachment regions from the chicken lysozyme gene (cMAR) and the human interferon ß (iMAR) were evaluated for enhancing recombinant gene expression level and stability in stably transfected CHO cells. In the absence of MAR elements, the SV40 promoter gave lower expression level but higher stability than the EF1α promoter and the CMV promoter. The inclusion of MAR elements did not increase the integrated gene copies for all promoters but did enhance expression level for only the SV40 promoter. The enhanced gene expression was due to an increase in mRNA levels. Neither MAR elements enhance gene expression stability during long-term culture. The combinations of SV40 promoter and MAR elements are the best for obtaining both high expression level and stability. The information presented here would be valuable to those developing vectors for generation of CHO cell lines with stable and high productivity.


Assuntos
Regulação da Expressão Gênica , Regiões de Interação com a Matriz/genética , Regiões Promotoras Genéticas , Proteínas Recombinantes/biossíntese , Animais , Células CHO , Cricetinae , Cricetulus , Vetores Genéticos , Humanos , RNA Mensageiro/biossíntese , Vírus 40 dos Símios/genética , Transfecção
10.
Eur J Hum Genet ; 22(9): 1117-23, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24448543

RESUMO

Mechanisms that regulate attachment of the scaffold/matrix attachment regions (S/MARs) to the nuclear matrix remain largely unknown. We have studied the effect of simple sequence length polymorphism (SSLP), DNA methylation and chromatin organization in an S/MAR implicated in facioscapulohumeral dystrophy (FSHD), a hereditary disease linked to a partial deletion of the D4Z4 repeat array on chromosome 4q. This FSHD-related nuclear matrix attachment region (FR-MAR) loses its efficiency in myoblasts from FSHD patients. Three criteria were found to be important for high-affinity interaction between the FR-MAR and the nuclear matrix: the presence of a specific SSLP haplotype in chromosomal DNA, the methylation of one specific CpG within the FR-MAR and the absence of histone H3 acetylated on lysine 9 in the relevant chromatin fragment.


Assuntos
Epigênese Genética , Regiões de Interação com a Matriz/genética , Repetições de Microssatélites/genética , Distrofia Muscular Facioescapuloumeral/genética , Matriz Nuclear/metabolismo , Polimorfismo Genético , Acetilação , Adulto , Sequência de Bases , Linhagem Celular Tumoral , Células Cultivadas , Cromatina/metabolismo , Ilhas de CpG , Metilação de DNA , Feminino , Histonas/metabolismo , Humanos , Masculino , Pessoa de Meia-Idade , Dados de Sequência Molecular , Mioblastos/metabolismo , Ligação Proteica
11.
Gene ; 534(2): 177-82, 2014 Jan 25.
Artigo em Inglês | MEDLINE | ID: mdl-24220851

RESUMO

This work aimed to study a novel transgenic expression system of the CD/TK double suicide genes enhanced by the nuclear matrix attachment region (MAR) for gene therapy. The recombinant vector pMS-CD/TK containing the MAR-survivin promoter-CD/TK cassette was developed and transfected into human gastric cancer SGC-7901 cells. Expression of the CD/TK genes was detected by quantitative real-time PCR (qPCR) and Western blot. Cell viability and apoptosis were measured using the methyl thiazolyl tetrazolium (MTT) assay and flow cytometry. When the MAR fragment was inserted into the upstream of the survivin promoter, the qPCR result showed that the expression of the CD/TK genes significantly increased 7.7-fold in the transgenic SGC-7901 cells with plasmid pMS-CD/TK compared with that without MAR. MTT and flow cytometry analyses indicated that treatment with the prodrugs (5-FC+GCV) significantly decreased the cellular survival rate and enhanced the cellular apoptosis in the SGC-7901 cells. The expression of the CD/TK double suicide genes driven by the survivin promoter can be enhanced by the MAR fragment in human gastric cancer cells.


Assuntos
Genes Transgênicos Suicidas , Proteínas Inibidoras de Apoptose/genética , Regiões de Interação com a Matriz/genética , Neoplasias Gástricas/genética , Neoplasias Gástricas/terapia , Apoptose/genética , Linhagem Celular Tumoral , Sobrevivência Celular/genética , Terapia Genética/métodos , Vetores Genéticos/genética , Humanos , Plasmídeos/genética , Regiões Promotoras Genéticas , Neoplasias Gástricas/patologia , Taxa de Sobrevida , Survivina
12.
PLoS One ; 8(10): e77350, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-24124615

RESUMO

Gene amplification plays a pivotal role in malignant transformation of human cells. A plasmid with both a mammalian replication-initiation region (IR)/origin/replicator and a nuclear matrix-attachment region (MAR) is spontaneously amplified in transfected cells by a mechanism that involves amplification at the extrachromosomal site, followed by amplification at the chromosomal arm, ultimately generating a long homogeneously staining region (HSR). Several observations suggest that replication initiation from IR sequences might mediate amplification. To test this idea, we previously dissected c-myc and DHFR IRs to identify the minimum sequence required to support amplification. In this study, we applied an improved analysis that discriminates between two amplification steps to the ß-globin RepP IR, which contains separate elements already known to be essential for initiation on the chromosome arm. The IR sequence was required at least for the extrachromosomal amplification step. In addition to the vector-encoded MAR, amplification also required an AT-rich region and a MAR-like element, consistent with the results regarding replicator activity on the chromosome. However, amplification did not require the AG-rich tract necessary for replicator activity, but instead required a novel sequence containing another AG-rich tract. The differential sequence requirement might be a consequence of extrachromosomal replication.


Assuntos
Replicação do DNA , Amplificação de Genes , Sequências Reguladoras de Ácido Nucleico , Origem de Replicação , Globinas beta/genética , Animais , Células CHO , Linhagem Celular Tumoral , Cricetulus , Ordem dos Genes , Humanos , Regiões de Interação com a Matriz/genética , Modelos Biológicos , Plasmídeos/genética
13.
Biomed Res Int ; 2013: 862450, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-24093104

RESUMO

We isolated the matrix attachment region-binding protein (MBP) DMBP-1 from Dunaliella salina in our previous studies. MBPs are part of the cis-acting protein family cluster. The regulatory function possibly works through the interaction of the MBPs with each other. In the present study, DMBP-1 was used as the bait in screening the D. salina cDNA library for DMBP-1 interactors that could potentially mediate the DMBP-1-regulated functions. A novel MBP, namely, DMBP-2, was identified as a DMBP-1 binding partner. The cDNA of DMBP-1 was 823 bp long and contained a 573 bp open reading frame, which encoded a polypeptide of 191 amino acids. The interaction between DMBP-2 and DMBP-1 was further confirmed through glutathione S-transferase pull-down assays.


Assuntos
Proteínas de Transporte/genética , Clorófitas/genética , Regiões de Interação com a Matriz/genética , Sequência de Aminoácidos , Clonagem Molecular , Biblioteca Gênica
14.
Anal Biochem ; 443(1): 113-6, 2013 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-23969013

RESUMO

We modified and tested scaffold/matrix attachment region (S/MAR) episomal vectors. The new vectors would be useful in obtaining cells stably expressing fluorescent protein-tagged transgenes with small, mostly within 10-fold cell-to-cell fluctuations. In the vectors, the same transcript directs episomal replication and expression of transgene/antibiotic marker, and only antibiotic selection without any other extra steps was sufficient to obtain desired stable cells, including those expressing two different proteins simultaneously. Furthermore, the two test cases (expression of human growth hormone in AtT20 and four protein kinase C isoforms in HEK293) would prove to be useful in visualizing and analyzing regulatory processes involving these proteins.


Assuntos
Expressão Gênica , Genes Reporter , Vetores Genéticos , Regiões de Interação com a Matriz/genética , Plasmídeos , Animais , Biomarcadores/metabolismo , Corticotrofos/citologia , Corticotrofos/metabolismo , Replicação do DNA , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Hormônio do Crescimento/genética , Hormônio do Crescimento/metabolismo , Células HEK293 , Humanos , Isoenzimas/genética , Isoenzimas/metabolismo , Camundongos , Proteína Quinase C/genética , Proteína Quinase C/metabolismo , Transgenes
15.
BMC Biotechnol ; 13: 49, 2013 Jun 04.
Artigo em Inglês | MEDLINE | ID: mdl-23734827

RESUMO

BACKGROUND: A key issue for safe and reproducible gene therapy approaches is the autologous and tissue-specific expression of transgenes. Tissue-specific expression in vivo is either achieved by transfer vectors that deliver the gene of interest into a distinct cell type or by use of tissue-specific expression cassettes. Here we present the generation of non-viral, episomally replicating vectors that are able to replicate in a tissue specific manner thus allowing tissue specific transgene expression in combination with episomal replication. The episomal replication of the prototype vector pEPI-1 and its derivatives depends exclusively on a transcription unit starting from a constitutively active promoter extending into the scaffold/matrix attachment region (S/MAR). RESULTS: Here, we exchanged the constitutive promoter in the pEPI derivative pEPito by the tumor specific alpha fetoprotein (AFP) or the muscle specific smooth muscle 22 (SM22) promoter leading to specific transgene expression in AFP positive human hepatocellular carcinoma (HUH7) and in a SM22 positive cell line, respectively. The incorporation of the hCMV enhancer element into the expression cassette further boosted the expression levels with both promoters. Tissue specific-replication could be exemplary proven for the smooth muscle protein 22 (SM22) promoter in vitro. With the AFP promoter-driven pEPito vector hepatocellular carcinoma-specific expression could be achieved in vivo after systemic vector application together with polyethylenimine as transfection enhancer. CONCLUSIONS: In this study we present an episomal plasmid system designed for tissue specific transgene expression and replication. The human AFP-promoter in combination with the hCMV enhancer element was demonstrated to be a valuable tissue-specific promoter for targeting hepatocellular carcinomas with non-viral gene delivery system, and tissue specific replication could be shown in vitro with the muscle specific SM22 promoter. In combination with appropriate delivery systems, the tissue specific pEPito vector system will allow higher tissue-specificity with less undesired side effects and is suitable for long term transgene expression in vivo within gene therapeutical approaches.


Assuntos
Vetores Genéticos/biossíntese , Plasmídeos/genética , Animais , Linhagem Celular Tumoral , Feminino , Expressão Gênica , Técnicas de Transferência de Genes , Terapia Genética , Vetores Genéticos/genética , Células HEK293 , Células HeLa , Xenoenxertos , Humanos , Neoplasias Hepáticas/metabolismo , Regiões de Interação com a Matriz/genética , Camundongos , Camundongos Nus , Proteínas dos Microfilamentos/genética , Proteínas dos Microfilamentos/metabolismo , Proteínas Musculares/genética , Proteínas Musculares/metabolismo , Regiões Promotoras Genéticas , Alicerces Teciduais , Transfecção , Transgenes , alfa-Fetoproteínas/genética , alfa-Fetoproteínas/metabolismo
16.
Plant Cell Rep ; 32(8): 1211-8, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23535868

RESUMO

KEY MESSAGE: Peanuts transformed with the synthetic cry8Ea1 gene flanked by MARs are a potentially effective control strategy against white grubs. Cry8Ea1 protein levels of the construct containing MARs were increased by 2.5 times. White grubs are now recognized as the most important pests of peanut worldwide. A synthetic cry8Ea1 gene, which was toxic to Holotrichia parallela larvae, was expressed in chimeric peanut roots using an Agrobacterium rhizogenes-mediated transformation system. The relative mRNA and protein levels of the cry8Ea1 gene were confirmed by quantitative real-time PCR and ELISA, respectively. The effects of matrix attachment regions (MARs) on the expression and activity of the cry8Ea1 gene were analyzed. The average expression level of cry8Ea1 in peanut roots was higher for the plants harboring constructs flanked by MARs from tobacco. Moreover, differing from previous studies, the synthetic cry8Ea1 gene flanked by MARs showed more variation in protein levels than mRNA levels. These composite plants containing cry8Ea1 gene flanked by MARs exhibited a high toxicity against Holotrichia parallela larvae as shown by bioassay analysis, thus offering a potential effective combination to control subterranean insects in peanuts.


Assuntos
Besouros/fisiologia , Regiões de Interação com a Matriz/genética , Proteínas Recombinantes/genética , Animais , Arachis/genética , Arachis/parasitologia , Bioensaio , Raízes de Plantas/genética , Raízes de Plantas/parasitologia , Plantas Geneticamente Modificadas , Proteínas Recombinantes/metabolismo , Transcrição Gênica , Transformação Genética
17.
Transgenic Res ; 22(5): 949-64, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23435752

RESUMO

Expression of the human granulocyte-macrophage colony-stimulating factor (hGM-CSF) gene under the control of the 5'-regulatory sequence of the goat alpha-S1-casein gene with and without a matrix attachment region (MAR) element from the Drosophila histone 1 gene was studied in four and eight transgenic mouse lines, respectively. Of the four transgenic lines carrying the transgene without MAR, three had correct tissues-specific expression of the hGM-CSF gene in the mammary gland only and no signs of cell mosaicism. The concentration of hGM-CSF in the milk of transgenic females varied from 1.9 to 14 µg/ml. One line presented hGM-CSF in the blood serum, indicating ectopic expression. The values of secretion of hGM-CSF in milk of 6 transgenic lines carrying the transgene with MAR varied from 0.05 to 0.7 µg/ml, and two of these did not express hGM-CSF. Three of the four examined animals from lines of this group showed ectopic expression of the hGM-CSF gene, as determined by RT-PCR and immunofluorescence analyses, as well as the presence of hGM-CSF in the blood serum. Mosaic expression of the hGM-CSF gene in mammary epithelial cells was specific to all examined transgenic mice carrying the transgene with MAR but was never observed in the transgenic mice without MAR. The mosaic expression was not dependent on transgene copy number. Thus, the expected "protective or enhancer effect" from the MAR element on the hGM-CSF gene expression was not observed.


Assuntos
Caseínas/genética , Fator Estimulador de Colônias de Granulócitos e Macrófagos/genética , Fator Estimulador de Colônias de Granulócitos e Macrófagos/metabolismo , Regiões de Interação com a Matriz/genética , Animais , Clonagem Molecular , Primers do DNA/genética , Drosophila/genética , Ensaio de Imunoadsorção Enzimática , Feminino , Imunofluorescência , Cabras/genética , Fator Estimulador de Colônias de Granulócitos e Macrófagos/sangue , Histonas/genética , Humanos , Masculino , Glândulas Mamárias Animais/metabolismo , Camundongos , Camundongos Transgênicos , Plasmídeos/genética , Reação em Cadeia da Polimerase , Sequências Reguladoras de Ácido Nucleico/genética , Reação em Cadeia da Polimerase Via Transcriptase Reversa
18.
Hum Mol Genet ; 22(8): 1632-42, 2013 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-23335596

RESUMO

Mutations in genes in the retinal pigment epithelium (RPE) cause or contribute to debilitating ocular diseases, including Leber's congenital amaurosis (LCA). Genetic therapies, particularly adeno-associated viruses (AAVs), are a popular choice for monogenic diseases; however, the limited payload capacity of AAVs combined with the large number of retinal disease genes exceeding that capacity make the development of alternative delivery methods critical. Here, we test the ability of compacted DNA nanoparticles (NPs) containing a plasmid with a scaffold matrix attachment region (S/MAR) and vitelliform macular dystrophy 2 (VMD2) promoter to target the RPE, drive long-term, tissue-specific gene expression and mediate proof-of-principle rescue in the rpe65(-/-) model of LCA. We show that the S/MAR-containing plasmid exhibited reporter gene expression levels several fold higher than plasmid or NPs without S/MARs. Importantly, this expression was highly persistent, lasting up to 2 years (last timepoint studied). We therefore selected this plasmid for testing in the rpe65(-/-) mouse model and observe that NP or plasmid VMD2-hRPE65-S/MAR led to structural and functional improvements in the LCA disease phenotype. These results indicate that the non-viral delivery of hRPE65 vectors can result in persistent, therapeutically efficacious gene expression in the RPE.


Assuntos
Terapia Genética , Amaurose Congênita de Leber , Degeneração Retiniana/genética , cis-trans-Isomerases/genética , Animais , Bestrofinas , Canais de Cloreto/genética , DNA/administração & dosagem , DNA/química , Modelos Animais de Doenças , Proteínas do Olho/genética , Regulação da Expressão Gênica , Humanos , Amaurose Congênita de Leber/genética , Amaurose Congênita de Leber/terapia , Regiões de Interação com a Matriz/genética , Camundongos , Nanopartículas/administração & dosagem , Nanopartículas/química , Especificidade de Órgãos , Degeneração Retiniana/terapia , Epitélio Pigmentado da Retina/patologia , cis-trans-Isomerases/administração & dosagem
19.
Res Vet Sci ; 94(3): 484-9, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23158852

RESUMO

Staphylococcus aureus (S. aureus) is one of the most widespread agent of diseases in humans and animals. In dairy cows, S. aureus is the most frequently isolated contagious pathogens in mastitis cases and vaccines are one of the potential tools to control the infections, thus decreasing the use of antibiotics. Among all the virulence factors produced by S. aureus, extra cellular fibrinogen binding protein (Efb) is an important one in the pathogenesis of mastitis. Plants are useful bioreactors to produce antigens and the aim of the study was the production of Efb in two cultivars of Nicotiana tabacum as a mean to produce vaccine against S. aureus in plants. A matrix attachment region (MAR) sequence was inserted near the two borders of transfer-DNA in the transformation vector in the two possible orientations. The presence of MAR elements in the transformation system significantly improved transformation efficiency and Efb protein yield up to a 2% level on total soluble protein (TSP). Mice orally immunized with transgenic lyophilized leaves produced an antigen-specific immune response.


Assuntos
Proteínas de Bactérias/genética , Nicotiana/genética , Infecções Estafilocócicas/imunologia , Vacinas Antiestafilocócicas/farmacologia , Administração Oral , Animais , Proteínas de Bactérias/análise , Proteínas de Bactérias/metabolismo , Proteínas de Bactérias/farmacologia , Ensaio de Imunoadsorção Enzimática , Imunidade Humoral/imunologia , Masculino , Regiões de Interação com a Matriz/genética , Camundongos , Camundongos Endogâmicos BALB C , Folhas de Planta/química , Plantas Geneticamente Modificadas/genética , Plantas Geneticamente Modificadas/metabolismo , Infecções Estafilocócicas/prevenção & controle , Vacinas Antiestafilocócicas/administração & dosagem , Nicotiana/metabolismo
20.
Hum Gene Ther Methods ; 23(6): 408-15, 2012 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-23240650

RESUMO

Primary human B cells are an attractive target for gene-therapeutic applications, but have been found to be relatively resistant toward transduction with lentiviral vectors (LVVs), even though a number of different envelope pseudotypes were tested. Moreover, low transgene expression in primary human B cells has impeded the use of LVVs for this target cell. We investigated the transduction potential of gibbon-ape leukemia virus (GALV) Env-pseudotyped LVVs for primary human B cells. By establishing optimized transduction kinetics and multiplicities of infection, we were able to regularly obtain transduction efficiencies of more than 50% in CD40L-activated B cells. Noteworthy, with the use of GALV-pseudotyped LVVs we could achieve a more than 10-fold higher yield of transduced activated B cells in direct comparison with LVVs pseudotyped with measles virus glycoproteins. Phenotyping of transduced primary B cells revealed a majority of memory B cells, a long-lived phenotype, presumed to be well suited for enduring therapeutic interventions. Finally, by combining the enhancer (Eµ) and the matrix/scaffold-attachment regions (MARs) of the human immunoglobulin heavy chain with the promoter of spleen focus-forming virus (SFFV) we aimed at generating a novel LVV particularly suitable for B cell transgenesis. We show that the optimized vector facilitated significantly higher transgene expression in various B cell lines and, more importantly, primary human B cells (mean factor of three). In summary, we have established a novel protocol for the efficient lentiviral transduction of primary human B cells and have improved transgene expression in B cells by a specific vector modification.


Assuntos
Linfócitos B/metabolismo , Vetores Genéticos/genética , Vírus da Leucemia do Macaco Gibão/genética , Linfócitos B/citologia , Linfócitos B/imunologia , Antígenos CD40/metabolismo , Células Cultivadas , Vetores Genéticos/metabolismo , Células HEK293 , Humanos , Cadeias Pesadas de Imunoglobulinas/genética , Regiões de Interação com a Matriz/genética , Regiões Promotoras Genéticas , Vírus Formadores de Foco no Baço/genética , Transdução Genética
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