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1.
Int J Mol Sci ; 21(18)2020 Sep 11.
Artigo em Inglês | MEDLINE | ID: mdl-32933054

RESUMO

The human Transient Receptor Potential A1 (hTRPA1) ion channel, also known as the wasabi receptor, acts as a biosensor of various potentially harmful stimuli. It is activated by a wide range of chemicals, including the electrophilic compound N-methylmaleimide (NMM), but the mechanism of activation is not fully understood. Here, we used mass spectrometry to map and quantify the covalent labeling in hTRPA1 at three different concentrations of NMM. A functional truncated version of hTRPA1 (Δ1-688 hTRPA1), lacking the large N-terminal ankyrin repeat domain (ARD), was also assessed in the same way. In the full length hTRPA1, the labeling of different cysteines ranged from nil up to 95% already at the lowest concentration of NMM, suggesting large differences in reactivity of the thiols. Most important, the labeling of some cysteine residues increased while others decreased with the concentration of NMM, both in the full length and the truncated protein. These findings indicate a conformational switch of the proteins, possibly associated with activation or desensitization of the ion channel. In addition, several lysines in the transmembrane domain and the proximal N-terminal region were labeled by NMM, raising the possibility that lysines are also key targets for electrophilic activation of hTRPA1.


Assuntos
Canal de Cátion TRPA1/metabolismo , Repetição de Anquirina/fisiologia , Cisteína/metabolismo , Humanos , Ativação do Canal Iônico/fisiologia , Lisina/metabolismo , Espectrometria de Massas/métodos , Domínios Proteicos/fisiologia , Compostos de Sulfidrila/metabolismo
2.
Nat Commun ; 11(1): 1353, 2020 03 13.
Artigo em Inglês | MEDLINE | ID: mdl-32170056

RESUMO

Perception of pathogenic effectors in plants often relies on nucleotide-binding domain (NBS) and leucine-rich-repeat-containing (NLR) proteins. Some NLRs contain additional domains that function as integrated decoys for pathogen effector targets and activation of immune signalling. Wheat stripe rust is one of the most devastating diseases of crop plants. Here, we report the cloning of YrU1, a stripe rust resistance gene from the diploid wheat Triticum urartu, the progenitor of the A genome of hexaploid wheat. YrU1 encodes a coiled-coil-NBS-leucine-rich repeat protein with N-terminal ankyrin-repeat and C-terminal WRKY domains, representing a unique NLR structure in plants. Database searches identify similar architecture only in wheat relatives. Transient expression of YrU1 in Nicotiana benthamiana does not induce cell death in the absence of pathogens. The ankyrin-repeat and coiled-coil domains of YrU1 self-associate, suggesting that homodimerisation is critical for YrU1 function. The identification and cloning of this disease resistance gene sheds light on NLR protein function and may facilitate breeding to control the devastating wheat stripe rust disease.


Assuntos
Repetição de Anquirina/fisiologia , Anquirinas/metabolismo , Proteínas de Ligação a DNA/metabolismo , Resistência à Doença/fisiologia , Doenças das Plantas/imunologia , Fatores de Transcrição/metabolismo , Triticum/imunologia , Repetição de Anquirina/genética , Anquirinas/genética , Basidiomycota , Clonagem Molecular , Proteínas de Ligação a DNA/genética , Resistência à Doença/genética , Regulação da Expressão Gênica de Plantas , Técnicas de Silenciamento de Genes , Genes de Plantas , Proteínas NLR , Doenças das Plantas/microbiologia , Imunidade Vegetal/genética , Imunidade Vegetal/fisiologia , Proteínas de Plantas/genética , Plantas Geneticamente Modificadas/metabolismo , Nicotiana/genética , Nicotiana/metabolismo , Fatores de Transcrição/genética , Transcriptoma , Triticum/genética
3.
BMC Microbiol ; 18(1): 5, 2018 01 05.
Artigo em Inglês | MEDLINE | ID: mdl-29433439

RESUMO

BACKGROUND: The intracellular bacterial pathogen Legionella pneumophila proliferates in human alveolar macrophages, resulting in a severe pneumonia termed Legionnaires' disease. Throughout the course of infection, L. pneumophila remains enclosed in a specialized membrane compartment that evades fusion with lysosomes. The pathogen delivers over 300 effector proteins into the host cell, altering host pathways in a manner that sets the stage for efficient pathogen replication. The L. pneumophila effector protein AnkX targets host Rab GTPases and functions in preventing fusion of the Legionella-containing vacuole with lysosomes. However, the current understanding of AnkX's interaction with host proteins and the means through which it exerts its cellular function is limited. RESULTS: Here, we investigated the protein interaction network of AnkX by using the nucleic acid programmable protein array (NAPPA), a high-density platform comprising 10,000 unique human ORFs. This approach facilitated the discovery of PLEKHN1 as a novel interaction partner of AnkX. We confirmed this interaction through multiple independent in vitro pull-down, co-immunoprecipitation, and cell-based assays. Structured illumination microscopy revealed that endogenous PLEKHN1 is found in the nucleus and on vesicular compartments, whereas ectopically produced AnkX co-localized with lipid rafts at the plasma membrane. In mammalian cells, HaloTag-AnkX co-localized with endogenous PLEKHN1 on vesicular compartments. A central fragment of AnkX (amino acids 491-809), containing eight ankyrin repeats, extensively co-localized with endogenous PLEKHN1, indicating that this region may harbor a new function. Further, we found that PLEKHN1 associated with multiple proteins involved in the inflammatory response. CONCLUSIONS: Altogether, our study provides evidence that in addition to Rab GTPases, the L. pneumophila effector AnkX targets nuclear host proteins and suggests that AnkX may have novel functions related to manipulating the inflammatory response.


Assuntos
Repetição de Anquirina/fisiologia , Proteínas de Bactérias/metabolismo , Interações Hospedeiro-Patógeno/fisiologia , Legionella pneumophila/metabolismo , Doença dos Legionários/metabolismo , Proteínas Ligadas a Lipídeos/metabolismo , Repetição de Anquirina/genética , Membrana Celular/metabolismo , Endocitose/fisiologia , Células HEK293 , Células HeLa , Humanos , Legionella pneumophila/patogenicidade , Lisossomos/metabolismo , Macrófagos/microbiologia , Proteínas Nucleares , Proteínas Recombinantes , Vacúolos/metabolismo , Proteínas rab de Ligação ao GTP/metabolismo
4.
Sci Rep ; 7(1): 16292, 2017 11 24.
Artigo em Inglês | MEDLINE | ID: mdl-29176615

RESUMO

Green fluorescent protein (GFP) fusions are pervasively used to study structures and processes. Specific GFP-binders are thus of great utility for detection, immobilization or manipulation of GFP-fused molecules. We determined structures of two designed ankyrin repeat proteins (DARPins), complexed with GFP, which revealed different but overlapping epitopes. Here we show a structure-guided design strategy that, by truncation and computational reengineering, led to a stable construct where both can bind simultaneously: by linkage of the two binders, fusion constructs were obtained that "wrap around" GFP, have very high affinities of about 10-30 pM, and extremely slow off-rates. They can be natively produced in E. coli in very large amounts, and show excellent biophysical properties. Their very high stability and affinity, facile site-directed functionalization at introduced unique lysines or cysteines facilitate many applications. As examples, we present them as tight yet reversible immobilization reagents for surface plasmon resonance, as fluorescently labelled monomeric detection reagents in flow cytometry, as pull-down ligands to selectively enrich GFP fusion proteins from cell extracts, and as affinity column ligands for inexpensive large-scale protein purification. We have thus described a general design strategy to create a "clamp" from two different high-affinity repeat proteins, even if their epitopes overlap.


Assuntos
Escherichia coli/metabolismo , Proteínas de Fluorescência Verde/química , Proteínas de Fluorescência Verde/metabolismo , Repetição de Anquirina/genética , Repetição de Anquirina/fisiologia , Escherichia coli/genética , Citometria de Fluxo , Proteínas de Fluorescência Verde/genética , Estrutura Secundária de Proteína
5.
J Struct Biol ; 192(3): 449-456, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26458359

RESUMO

Cerebral cavernous malformations (CCM) are vascular dysplasias that usually occur in the brain and are associated with mutations in the KRIT1/CCM1, CCM2/MGC4607/OSM/Malcavernin, and PDCD10/CCM3/TFAR15 genes. Here we report the 2.9 Å crystal structure of the ankyrin repeat domain (ARD) and FERM domain of the protein product of KRIT1 (KRIT1; Krev interaction trapped 1). The crystal structure reveals that the KRIT1 ARD contains 4 ankyrin repeats. There is an unusual conformation in the ANK4 repeat that is stabilized by Trp-404, and the structure reveals a solvent exposed ankyrin groove. Domain orientations of the three copies within the asymmetric unit suggest a stable interaction between KRIT1 ARD and FERM domains, indicating a globular ARD-FERM module. This resembles the additional F0 domain found N-terminal to the FERM domain of talin. Structural analysis of KRIT1 ARD-FERM highlights surface regions of high evolutionary conservation, and suggests potential sites that could mediate interaction with binding partners. The structure therefore provides a better understanding of KRIT1 at the molecular level.


Assuntos
Repetição de Anquirina/fisiologia , Proteínas Associadas aos Microtúbulos/ultraestrutura , Proteínas Proto-Oncogênicas/ultraestrutura , Sequência de Aminoácidos , Encéfalo/patologia , Cristalografia por Raios X , Hemangioma Cavernoso do Sistema Nervoso Central/genética , Humanos , Proteína KRIT1 , Proteínas Associadas aos Microtúbulos/genética , Dados de Sequência Molecular , Ligação Proteica/genética , Estrutura Terciária de Proteína , Proteínas Proto-Oncogênicas/genética , Alinhamento de Sequência
6.
J Mol Biol ; 426(3): 691-721, 2014 Feb 06.
Artigo em Inglês | MEDLINE | ID: mdl-24513107

RESUMO

Antibodies are the most versatile binding proteins in nature with six loops creating a flexible continuous interaction surface. However, in some molecular formats, antibodies are aggregation prone. Designed ankyrin repeat proteins (DARPins) were successfully created as alternative design solutions. Nevertheless, their concave shape, rigidity and incompletely randomized binding surface may limit the epitopes that can be targeted by this extremely stable scaffold. Combining conformational diversity and a continuous convex paratope found in many antibodies with the beneficial biophysical properties of DARPins, we created LoopDARPins, a next generation of DARPins with extended epitope binding properties. We employed X-ray structure determination of a LoopDARPin for design validation. Biophysical characterizations show that the introduction of an elongated loop through consensus design does not decrease the stability of the scaffold,consistent with molecular dynamics simulations. Ribosome-display selections against extracellular signal-regulated kinase 2 (ERK2) and four members of the BCL-2 family (BCL-2, BCL-XL, BCL-W and MCL-1) of anti-apoptotic regulators yielded LoopDARPins with affinities in the mid-picomolar to low nanomol arrange against all targets. The BCL-2 family binders block the interaction with their natural interaction partner and will be valuable reagents to test the apoptotic response in functional assays. With the LoopDARPin scaffold, binders for BCL-2 with an affinity of 30 pM were isolated with only a single round of ribosome display,an enrichment that has not been described for any scaffold. Identical stringent one-round selections with conventional DARPins without loop yielded no binders. The LoopDARPin scaffold may become a highly valuable tool for biotechnological high-throughput applications.


Assuntos
Repetição de Anquirina/fisiologia , Desenho de Fármacos , Proteína Quinase 1 Ativada por Mitógeno/metabolismo , Proteínas Proto-Oncogênicas c-bcl-2/metabolismo , Ribossomos/metabolismo , Sequência de Aminoácidos , Cromatografia em Gel , Dicroísmo Circular , Cristalografia por Raios X , Ensaio de Imunoadsorção Enzimática , Biblioteca Gênica , Humanos , Proteína Quinase 1 Ativada por Mitógeno/química , Modelos Moleculares , Simulação de Dinâmica Molecular , Dados de Sequência Molecular , Biblioteca de Peptídeos , Conformação Proteica , Engenharia de Proteínas , Proteínas Proto-Oncogênicas c-bcl-2/química , Ressonância de Plasmônio de Superfície
7.
J Biol Chem ; 286(33): 28844-28857, 2011 Aug 19.
Artigo em Inglês | MEDLINE | ID: mdl-21685388

RESUMO

The Notch signal transduction pathway mediates important cellular functions through direct cell-to-cell contact. Deregulation of Notch activity can lead to an altered cell proliferation and has been linked to many human cancers. Casein kinase 2 (CK2), a ubiquitous kinase, regulates several cellular processes by phosphorylating proteins involved in signal transduction, gene expression, and protein synthesis. In this report we identify Notch(ICD) as a novel target of phosphorylation by CK2. Using mapping and mutational studies, we identified serine 1901, located in the ankyrin domain of Notch, as the target amino acid. Interestingly, phosphorylation of serine 1901 by CK2 appears to generate a second phosphorylation site at threonine 1898. Furthermore, threonine 1898 phosphorylation only occurs when Notch forms a complex with Mastermind and CSL. Phosphorylation of both threonine 1898 and serine 1901 resulted in decreased binding of the Notch-Mastermind-CSL ternary complex to DNA and consequently lower transcriptional activity. These data indicate that the phosphorylation of serine 1901 and threonine 1898 negatively regulates Notch function by dissociating the complex from DNA. This study identifies a new component involved in regulation of Notch(ICD) transcriptional activity, reinforcing the notion that a precise and tight regulation is required for this essential signaling pathway.


Assuntos
Caseína Quinase II/metabolismo , Receptores Notch/metabolismo , Transcrição Gênica/fisiologia , Repetição de Anquirina/fisiologia , Caseína Quinase II/genética , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Células HeLa , Humanos , Proteína de Ligação a Sequências Sinal de Recombinação J de Imunoglobina/genética , Proteína de Ligação a Sequências Sinal de Recombinação J de Imunoglobina/metabolismo , Complexos Multiproteicos/genética , Complexos Multiproteicos/metabolismo , Mapeamento de Peptídeos/métodos , Fosforilação/fisiologia , Receptores Notch/genética , Transdução de Sinais/fisiologia , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo
8.
PLoS Pathog ; 6(10): e1001153, 2010 Oct 21.
Artigo em Inglês | MEDLINE | ID: mdl-20975941

RESUMO

The membrane scission event that separates nascent enveloped virions from host cell membranes often requires the ESCRT pathway, which can be engaged through the action of peptide motifs, termed late (L-) domains, in viral proteins. Viral PTAP and YPDL-like L-domains bind directly to the ESCRT-I and ALIX components of the ESCRT pathway, while PPxY motifs bind Nedd4-like, HECT-domain containing, ubiquitin ligases (e.g. WWP1). It has been unclear precisely how ubiquitin ligase recruitment ultimately leads to particle release. Here, using a lysine-free viral Gag protein derived from the prototypic foamy virus (PFV), where attachment of ubiquitin to Gag can be controlled, we show that several different HECT domains can replace the WWP1 HECT domain in chimeric ubiquitin ligases and drive budding. Moreover, artificial recruitment of isolated HECT domains to Gag is sufficient to stimulate budding. Conversely, the HECT domain becomes dispensable if the other domains of WWP1 are directly fused to an ESCRT-1 protein. In each case where budding is driven by a HECT domain, its catalytic activity is essential, but Gag ubiquitination is dispensable, suggesting that ubiquitin ligation to trans-acting proteins drives budding. Paradoxically, however, we also demonstrate that direct fusion of a ubiquitin moiety to the C-terminus of PFV Gag can also promote budding, suggesting that ubiquitination of Gag can substitute for ubiquitination of trans-acting proteins. Depletion of Tsg101 and ALIX inhibits budding that is dependent on ubiquitin that is fused to Gag, or ligated to trans-acting proteins through the action of a PPxY motif. These studies underscore the flexibility in the ways that the ESCRT pathway can be engaged, and suggest a model in which the identity of the protein to which ubiquitin is attached is not critical for subsequent recruitment of ubiquitin-binding components of the ESCRT pathway and viral budding to proceed.


Assuntos
Ubiquitinas/metabolismo , Proteínas Virais/química , Proteínas Virais/metabolismo , Liberação de Vírus/fisiologia , Motivos de Aminoácidos/genética , Motivos de Aminoácidos/fisiologia , Repetição de Anquirina/genética , Repetição de Anquirina/fisiologia , Proteínas de Ligação ao Cálcio/genética , Proteínas de Ligação ao Cálcio/metabolismo , Proteínas de Ligação ao Cálcio/fisiologia , Proteínas de Ciclo Celular/genética , Proteínas de Ciclo Celular/metabolismo , Proteínas de Ciclo Celular/fisiologia , Células Cultivadas , Coenzimas/genética , Coenzimas/metabolismo , Complexos Endossomais de Distribuição Requeridos para Transporte/genética , Complexos Endossomais de Distribuição Requeridos para Transporte/metabolismo , Complexos Endossomais de Distribuição Requeridos para Transporte/fisiologia , Produtos do Gene gag/química , Produtos do Gene gag/genética , Produtos do Gene gag/metabolismo , Humanos , Modelos Biológicos , Ligação Proteica/genética , Ligação Proteica/fisiologia , Estrutura Terciária de Proteína/genética , Estrutura Terciária de Proteína/fisiologia , Spumavirus/metabolismo , Spumavirus/fisiologia , Transfecção , Ubiquitina-Proteína Ligases/genética , Ubiquitina-Proteína Ligases/metabolismo , Ubiquitinas/genética , Proteínas Virais/genética , Proteínas Virais/fisiologia , Liberação de Vírus/genética
9.
Cancer Res ; 70(4): 1595-605, 2010 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-20124480

RESUMO

Slow-clearing, tumor-targeting proteins such as monoclonal antibodies typically exhibit high tumor accumulation but low tissue contrast, whereas intermediate-sized proteins such as scFvs show faster clearance but only moderate tumor accumulation. For both, tumor targeting does not seem to improve further above an optimal affinity. We show here that with very small high-affinity proteins such as designed ankyrin repeat proteins (DARPins), these limits can be overcome. We have systematically investigated the influence of molecular mass and affinity on tumor accumulation with DARPins with specificity for HER2 in SK-OV-3.ip nude mouse xenografts. DARPins with a mass of 14.5 kDa and affinities between 270 nmol/L and 90 pmol/L showed a strong correlation of tumor accumulation with affinity to HER2, with the highest affinity DARPin reaching 8% ID/g after 24 hours and 6.5% ID/g after 48 hours (tumor-to-blood ratio >60). Tumor autoradiographs showed good penetration throughout the tumor mass. Genetic fusion of two DARPins (30 kDa) resulted in significantly lower tumor accumulation, similar to values observed for scFvs, whereas valency had no influence on accumulation. PEGylation of the DARPins increased the circulation half-life, leading to higher tumor accumulation (13.4% ID/g after 24 hours) but lower tumor-to-blood ratios. Affinity was less important for tumor uptake of the PEGylated constructs. We conclude that two regimes exist for delivering high levels of drug to a tumor: small proteins with very high affinity, such as unmodified DARPins, and large proteins with extended half-life, such as PEGylated DARPins, in which the importance of affinity is less pronounced.


Assuntos
Repetição de Anquirina , Sistemas de Liberação de Medicamentos/métodos , Neoplasias/tratamento farmacológico , Proteínas/administração & dosagem , Proteínas/síntese química , Animais , Repetição de Anquirina/fisiologia , Afinidade de Anticorpos , Antineoplásicos/administração & dosagem , Antineoplásicos/síntese química , Antineoplásicos/química , Antineoplásicos/uso terapêutico , Desenho de Fármacos , Feminino , Humanos , Fragmentos Fc das Imunoglobulinas/administração & dosagem , Fragmentos Fc das Imunoglobulinas/química , Fragmentos Fc das Imunoglobulinas/uso terapêutico , Camundongos , Camundongos Nus , Peso Molecular , Engenharia de Proteínas/métodos , Proteínas/química , Proteínas/uso terapêutico , Especificidade por Substrato/fisiologia , Resultado do Tratamento , Células Tumorais Cultivadas , Ensaios Antitumorais Modelo de Xenoenxerto
10.
J Bacteriol ; 191(13): 4232-42, 2009 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-19411324

RESUMO

Coxiella burnetii is an obligate intracellular bacterium that directs biogenesis of a parasitophorous vacuole (PV) for replication. Effectors of PV maturation are likely translocated into the host cytosol by a type IV secretion system (T4SS) with homology to the Dot/Icm apparatus of Legionella pneumophila. Since secreted bacterial virulence factors often functionally mimic the activities of host proteins, prokaryotic proteins with eukaryotic features are considered candidate T4SS substrates. Genes encoding proteins with eukaryotic-type ankyrin repeat domains (Anks) were identified upon genome sequencing of the C. burnetii Nine Mile reference isolate, which is associated with a case of human acute Q fever. Interestingly, recent genome sequencing of the G and K isolates, derived from human chronic endocarditis patients, and of the Dugway rodent isolate revealed remarkable heterogeneity in the Ank gene family, with the Dugway isolate harboring the largest number of full-length Ank genes. Using L. pneumophila as a surrogate host, we identified 10 Dugway Anks and 1 Ank specific to the G and K endocarditis isolates translocated into the host cytosol in a Dot/Icm-dependent fashion. A 10-amino-acid C-terminal region appeared to be necessary for translocation, with some Anks also requiring the chaperone IcmS for secretion. Ectopically expressed Anks localized to a variety of subcellular regions in mammalian cells, including microtubules, mitochondria, and the PV membrane. Collectively, these data suggest that C. burnetii isolates translocate distinct subsets of the Ank protein family into the host cytosol, where they modulate diverse functions, some of which may be unique to C. burnetii pathotypes.


Assuntos
Repetição de Anquirina/fisiologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/fisiologia , Transporte Biológico/fisiologia , Proteínas de Transporte/fisiologia , Coxiella burnetii , Proteínas de Membrana/fisiologia , Chaperonas Moleculares/fisiologia , Repetição de Anquirina/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Transporte Biológico/genética , Proteínas de Transporte/genética , Proteínas de Transporte/metabolismo , Linhagem Celular , Coxiella burnetii/genética , Coxiella burnetii/metabolismo , AMP Cíclico/metabolismo , Citosol/metabolismo , Células HeLa , Humanos , Immunoblotting , Legionella pneumophila/genética , Legionella pneumophila/metabolismo , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Microscopia de Fluorescência , Chaperonas Moleculares/genética
11.
Int J Parasitol ; 39(7): 747-54, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19136004

RESUMO

Cryptosporidium parvum is a member of the Apicomplexa that lacks a plastid and associated nuclear-encoded genes, which has hampered its use in evolutionary comparisons with algae and eliminated a pool of potentially useful drug targets. Here we show that apicomplexan parasites possess an unusual family of class II histone deacetylase (HDAC) proteins with orthologues that are present in other chromalveolates and primitive algae. A striking feature of these HDAC proteins is the presence of ankyrin repeats in the amino-terminus that appear to be required for enzyme activity. In vitro and in vivo analyses of the C. parvum orthologue indicate that this subclass of chromatin-remodelling proteins is targeted by the anti-cancer drug suberoylanilide hydroxamic acid and that these proteins are most likely involved in the essential process of H4 histone deacetylation that coincides with DNA replication. We propose that members of this novel class of histone deacetylase can serve as promising new targets for treatments against debilitating diseases such as cryptosporidosis, toxoplasmosis and malaria.


Assuntos
Repetição de Anquirina/genética , Montagem e Desmontagem da Cromatina/fisiologia , Cryptosporidium parvum/genética , Histona Desacetilases/fisiologia , Proteínas de Protozoários/fisiologia , Animais , Repetição de Anquirina/fisiologia , Cryptosporidium parvum/crescimento & desenvolvimento , Replicação do DNA/fisiologia , Inibidores Enzimáticos/farmacologia , Perfilação da Expressão Gênica/métodos , Genoma , Inibidores de Histona Desacetilases/farmacologia , Histona Desacetilases/classificação , Histona Desacetilases/efeitos dos fármacos , Ácidos Hidroxâmicos/farmacologia , Técnicas In Vitro , Fases de Leitura Aberta , Filogenia , Proteínas de Protozoários/classificação , Proteínas de Protozoários/efeitos dos fármacos , Proteínas Recombinantes/farmacologia , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Vorinostat
12.
Blood ; 113(16): 3845-56, 2009 Apr 16.
Artigo em Inglês | MEDLINE | ID: mdl-19064729

RESUMO

Erythropoiesis is primarily controlled by erythropoietin (Epo), which stimulates proliferation, differentiation, and survival of erythroid precursors. We have previously shown that the tyrosine kinase Lyn is critical for transducing differentiation signals emanating from the activated Epo receptor. A yeast 2-hybrid screen for downstream effectors of Lyn identified a novel protein, Liar (Lyn-interacting ankyrin repeat), which forms a multiprotein complex with Lyn and HS1 in erythroid cells. Interestingly, 3 of the ankyrin repeats of Liar define a novel SH3 binding region for Lyn and HS1. Liar also contains functional nuclear localization and nuclear export sequences and shuttles rapidly between the nucleus and cytoplasm. Ectopic expression of Liar inhibited the differentiation of normal erythroid progenitors, as well as immortalized erythroid cells. Significantly, Liar affected Epo-activated signaling molecules including Erk2, STAT5, Akt, and Lyn. These results show that Liar is a novel Lyn-interacting molecule that plays an important role in regulating intracellular signaling events associated with erythroid terminal differentiation.


Assuntos
Proteínas de Transporte/metabolismo , Diferenciação Celular/fisiologia , Núcleo Celular/metabolismo , Células Precursoras Eritroides/metabolismo , Eritropoese/fisiologia , Eritropoetina/metabolismo , Quinases da Família src/metabolismo , Transporte Ativo do Núcleo Celular/fisiologia , Animais , Repetição de Anquirina/fisiologia , Células COS , Núcleo Celular/genética , Proliferação de Células , Chlorocebus aethiops , Células Precursoras Eritroides/citologia , Fator Estimulador de Colônias de Granulócitos/metabolismo , Camundongos , Proteína Quinase 1 Ativada por Mitógeno/metabolismo , Sinais de Localização Nuclear/metabolismo , Proteínas Proto-Oncogênicas c-akt/metabolismo , Fator de Transcrição STAT5/metabolismo , Transdução de Sinais/fisiologia
13.
New Phytol ; 181(1): 89-102, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-18823312

RESUMO

Arabidopsis thaliana acyl-CoA-binding protein 2 (ACBP2) was observed to interact with farnesylated protein 6 (AtFP6), which has a metal-binding motif (M/LXCXXC). Their interaction and expression in response to heavy metals were investigated. Yeast two-hybrid analysis and in vitro assays showed that an ACBP2 derivative lacking ankyrin repeats did not interact with AtFP6, indicating that the ankyrin repeats mediate protein-protein interaction. Autofluorescence-tagged ACBP2 and AtFP6 transiently co-expressed in tobacco (Nicotiana tabacum) were both targeted to the plasma membrane. Reverse transcriptase polymerase chain reaction and northern blot analyses revealed that AtFP6 mRNA was induced by cadmium (Cd(II)) in A. thaliana roots. Assays using metal-chelate affinity chromatography demonstrated that in vitro translated ACBP2 and AtFP6 bound lead (Pb(II)), Cd(II) and copper (Cu(II)). Consistently, assays using fluorescence analysis confirmed that (His)(6)-AtFP6 bound Pb(II), like (His)(6)-ACBP2. Arabidopsis thaliana plants overexpressing ACBP2 or AtFP6 were more tolerant to Cd(II) than wild-type plants. Plasma membrane-localized ACBP2 and AtFP6 probably mediate Pb(II), Cd(II) and Cu(II) transport in A. thaliana roots. Also, (His)(6)-ACBP2 binds [(14)C]linoleoyl-CoA and [(14)C]linolenoyl-CoA, the precursors for phospholipid repair following lipid peroxidation under heavy metal stress at the plasma membrane. ACBP2-overexpressing plants were more tolerant to hydrogen peroxide than wild-type plants, further supporting a role for ACBP2 in post-stress membrane repair.


Assuntos
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Proteínas de Transporte/metabolismo , Metais Pesados/metabolismo , Repetição de Anquirina/fisiologia , Membrana Celular/metabolismo , Peróxido de Hidrogênio , Peroxidação de Lipídeos , Proteínas de Membrana Transportadoras , Prenilação de Proteína , RNA Mensageiro/biossíntese , Técnicas do Sistema de Duplo-Híbrido
14.
Structure ; 16(10): 1443-53, 2008 Oct 08.
Artigo em Inglês | MEDLINE | ID: mdl-18940601

RESUMO

The structure of proteins that are difficult to crystallize can often be solved by forming a noncovalent complex with a helper protein--a crystallization "chaperone." Although several such applications have been described to date, their handling usually is still very laborious. A valuable addition to the present repertoire of binding proteins is the recently developed designed ankyrin repeat protein (DARPin) technology. DARPins are built based on the natural ankyrin repeat protein fold with randomized surface residue positions allowing specific binding to virtually any target protein. The broad potential of these binding proteins for X-ray crystallography is illustrated by five cocrystal structures that have been determined recently comprising target proteins from distinct families, namely a sugar binding protein, two kinases, a caspase, and a membrane protein. This article reviews the opportunities of this technology for structural biology and the structural aspects of the DARPin-protein complexes.


Assuntos
Repetição de Anquirina/fisiologia , Chaperonas Moleculares/metabolismo , Sequência de Aminoácidos , Anticorpos/farmacologia , Proteínas de Transporte/química , Proteínas de Transporte/metabolismo , Proteínas de Ciclo Celular/química , Cristalografia por Raios X/métodos , Canamicina Quinase/química , Canamicina Quinase/metabolismo , Proteínas Ligantes de Maltose , Modelos Moleculares , Chaperonas Moleculares/química , Dados de Sequência Molecular , Complexos Multiproteicos/química , Ligação Proteica , Proteínas Serina-Treonina Quinases/química , Proteínas Proto-Oncogênicas/química , Quinase 1 Polo-Like
15.
PLoS Pathog ; 4(7): e1000109, 2008 Jul 25.
Artigo em Inglês | MEDLINE | ID: mdl-18654624

RESUMO

Here, we describe the generation of a novel type of HIV entry inhibitor using the recently developed Designed Ankyrin Repeat Protein (DARPin) technology. DARPin proteins specific for human CD4 were selected from a DARPin DNA library using ribosome display. Selected pool members interacted specifically with CD4 and competed with gp120 for binding to CD4. DARPin proteins derived in the initial selection series inhibited HIV in a dose-dependent manner, but showed a relatively high variability in their capacity to block replication of patient isolates on primary CD4 T cells. In consequence, a second series of CD4-specific DARPins with improved affinity for CD4 was generated. These 2nd series DARPins potently inhibit infection of genetically divergent (subtype B and C) HIV isolates in the low nanomolar range, independent of coreceptor usage. Importantly, the actions of the CD4 binding DARPins were highly specific: no effect on cell viability or activation, CD4 memory cell function, or interference with CD4-independent virus entry was observed. These novel CD4 targeting molecules described here combine the unique characteristics of DARPins-high physical stability, specificity and low production costs-with the capacity to potently block HIV entry, rendering them promising candidates for microbicide development.


Assuntos
Repetição de Anquirina/fisiologia , Anquirinas/farmacologia , Fármacos Anti-HIV/farmacologia , Antígenos CD4/imunologia , Linfócitos T CD4-Positivos/virologia , HIV/patogenicidade , Animais , Anquirinas/imunologia , Linfócitos T CD4-Positivos/imunologia , Sobrevivência Celular/efeitos dos fármacos , Reações Cruzadas , Células Dendríticas/imunologia , Relação Dose-Resposta Imunológica , Ensaio de Imunoadsorção Enzimática , Feminino , HIV/imunologia , Proteína gp120 do Envelope de HIV/imunologia , Humanos , Leucócitos Mononucleares/efeitos dos fármacos , Leucócitos Mononucleares/imunologia , Leucócitos Mononucleares/virologia , Ativação Linfocitária , Macaca mulatta , Masculino , Camundongos , Testes de Neutralização , Engenharia de Proteínas , Replicação Viral/efeitos dos fármacos
16.
Eur J Neurosci ; 27(5): 1131-42, 2008 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-18364033

RESUMO

Hydrogen peroxide (H(2)O(2)), which is contained in industrial products, is also generated within cells. H(2)O(2) causes pain but it has not been elucidated how it activates sensory neurons in the pain pathway. Here we show that transient receptor potential ankyrin 1 (TRPA1), expressed by sensory neurons in the pain pathway, is a receptor for H(2)O(2). H(2)O(2) activated mouse TRPA1 to induce Ca(2+) influx and elicit non-selective cation currents. These effects of H(2)O(2) were mimicked by both reactive oxygen species and reactive nitrogen species. Cysteine-reducing agents suppressed H(2)O(2)-induced TRPA1 activation, whereas cysteine-oxidizing agents activated TRPA1. H(2)O(2) caused Ca(2+) influx in a subset of dorsal root ganglia neurons, which responded to allyl isothiocyanate, a TRPA1 ligand. These results suggest that TRPA1 might be involved in the sensation of pain caused by H(2)O(2).


Assuntos
Repetição de Anquirina/fisiologia , Peróxido de Hidrogênio/metabolismo , Canais de Potencial de Receptor Transitório/metabolismo , Animais , Repetição de Anquirina/efeitos dos fármacos , Linhagem Celular , Células Cultivadas , Humanos , Peróxido de Hidrogênio/farmacologia , Camundongos , Camundongos Endogâmicos C57BL , Neurônios Aferentes/efeitos dos fármacos , Neurônios Aferentes/metabolismo , Neurônios Aferentes/fisiologia , Ratos , Canal de Cátion TRPA1 , Canais de Potencial de Receptor Transitório/agonistas
17.
Biochemistry ; 47(8): 2476-84, 2008 Feb 26.
Artigo em Inglês | MEDLINE | ID: mdl-18232717

RESUMO

Transient receptor potential (TRP) proteins are cation channels composed of a transmembrane domain flanked by large N- and C-terminal cytoplasmic domains. All members of the vanilloid family of TRP channels (TRPV) possess an N-terminal ankyrin repeat domain (ARD). The ARD of mammalian TRPV6, an important regulator of calcium uptake and homeostasis, is essential for channel assembly and regulation. The 1.7 A crystal structure of the TRPV6-ARD reveals conserved structural elements unique to the ARDs of TRPV proteins. First, a large twist between the fourth and fifth repeats is induced by residues conserved in all TRPV ARDs. Second, the third finger loop is the most variable region in sequence, length and conformation. In TRPV6, a number of putative regulatory phosphorylation sites map to the base of this third finger. Size exclusion chromatography and crystal packing indicate that the TRPV6-ARD does not assemble as a tetramer and is monomeric in solution. Adenosine triphosphate-agarose and calmodulin-agarose pull-down assays show that the TRPV6-ARD does not interact with either ligand, indicating a different functional role for the TRPV6-ARD than in the paralogous thermosensitive TRPV1 channel. Similar biochemical findings are also presented for the highly homologous mammalian TRPV5-ARD. The implications of the structural and biochemical data on the role of the ankyrin repeats in different TRPV channels are discussed.


Assuntos
Repetição de Anquirina , Canais de Cátion TRPV/química , Trifosfato de Adenosina/metabolismo , Sequência de Aminoácidos , Animais , Repetição de Anquirina/fisiologia , Calmodulina/metabolismo , Sequência Conservada , Cristalografia por Raios X , Dimerização , Humanos , Camundongos , Modelos Moleculares , Ligação Proteica , Estrutura Secundária de Proteína , Homologia de Sequência de Aminoácidos , Canais de Cátion TRPV/metabolismo , Temperatura
18.
Structure ; 15(5): 625-36, 2007 May.
Artigo em Inglês | MEDLINE | ID: mdl-17502107

RESUMO

Specific and potent caspase inhibitors are indispensable for the dissection of the intricate pathways leading to apoptosis. We selected a designed ankyrin repeat protein (DARPin) from a combinatorial library that inhibits caspase-2 in vitro with a subnanomolar inhibition constant and, in contrast to the peptidic caspase inhibitors, with very high specificity for this particular caspase. The crystal structure of this inhibitor (AR_F8) in complex with caspase-2 reveals the molecular basis for the specificity and, together with kinetic analyses, the allosteric mechanism of inhibition. The structure also shows a conformation of the active site that can be exploited for the design of inhibitory compounds. AR_F8 is a specific inhibitor of an initiator caspase and has the potential to help identify the function of caspase-2 in the complex biological apoptotic signaling network.


Assuntos
Repetição de Anquirina/fisiologia , Caspase 2/química , Inibidores de Caspase , Cisteína Endopeptidases/química , Engenharia de Proteínas , Sequência de Aminoácidos , Humanos , Dados de Sequência Molecular
19.
Biochemistry ; 45(51): 15168-78, 2006 Dec 26.
Artigo em Inglês | MEDLINE | ID: mdl-17176038

RESUMO

Ankyrin repeat, one of the most widely existing protein motifs in nature, consists of 30-34 amino acid residues and exclusively functions to mediate protein-protein interactions, some of which are directly involved in the development of human cancer and other diseases. Each ankyrin repeat exhibits a helix-turn-helix conformation, and strings of such tandem repeats are packed in a nearly linear array to form helix-turn-helix bundles with relatively flexible loops. The global structure of an ankyrin repeat protein is mainly stabilized by intra- and inter-repeat hydrophobic and hydrogen bonding interactions. The repetitive and elongated nature of ankyrin repeat proteins provides the molecular bases of the unique characteristics of ankyrin repeat proteins in protein stability, folding and unfolding, and binding specificity. Recent studies have demonstrated that ankyrin repeat proteins do not recognize specific sequences, and interacting residues are discontinuously dispersed into the whole molecules of both the ankyrin repeat protein and its partner. In addition, the availability of thousands of ankyrin repeat sequences has made it feasible to use rational design to modify the specificity and stability of physiologically important ankyrin repeat proteins and even to generate ankyrin repeat proteins with novel functions through combinatorial chemistry approaches.


Assuntos
Repetição de Anquirina/fisiologia , Domínios e Motivos de Interação entre Proteínas , Motivos de Aminoácidos , Animais , Humanos , Modelos Moleculares , Mapeamento de Interação de Proteínas/métodos
20.
Mol Plant Microbe Interact ; 16(2): 132-40, 2003 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-12575747

RESUMO

The cell-to-cell movement of Potato virus X (PVX) requires four virus-encoded proteins, the triple gene block (TGB) proteins (TGB25K, TGB12K, and TGB8K) and the coat protein. TGB12K increases the plasmodesmal size exclusion limit (SEL) and may, therefore, interact directly with components of the cell wall or with plant proteins associated with bringing about this change. A yeast two-hybrid screen using TGB12K as bait identified three TGB12K-interacting proteins (TIP1, TIP2, and TIP3). All three TIPs interacted specifically with TGB12K but not with TGB25K or TGB8K. Similarly, all three TIPs interacted with beta-1,3-glucanase, the enzyme that may regulate plasmodesmal SEL through callose degradation. Sequence analyses revealed that the TIPs encode very similar proteins and that TIP1 corresponds to the tobacco ankyrin repeat-containing protein HBP1. A TIP1::GFP fusion protein localized to the cytoplasm. Coexpression of this fusion protein with TGB12K induced cellular changes manifested as deposits of additional cytoplasm at the cell periphery. This work reports a direct link between a viral movement protein required to increase plasmodesmal SEL and a host factor that has been implicated as a key regulator of plasmodesmal SEL. We propose that the TIPs are susceptibility factors that modulate the plasmodesmal SEL.


Assuntos
Glucanos/metabolismo , Nicotiana/metabolismo , Proteínas de Plantas/metabolismo , Potexvirus/metabolismo , Sequência de Aminoácidos , Repetição de Anquirina/genética , Repetição de Anquirina/fisiologia , Transporte Biológico , Glucana 1,3-beta-Glucosidase , Proteínas de Fluorescência Verde , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Microscopia Eletrônica , Dados de Sequência Molecular , Folhas de Planta/genética , Folhas de Planta/ultraestrutura , Folhas de Planta/virologia , Proteínas de Plantas/genética , Potexvirus/genética , Ligação Proteica , Mapeamento de Interação de Proteínas , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Homologia de Sequência de Aminoácidos , Transdução de Sinais , Nicotiana/genética , Nicotiana/virologia , Técnicas do Sistema de Duplo-Híbrido , Proteínas Virais/genética , Proteínas Virais/metabolismo , beta-Glucosidase/metabolismo
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