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1.
Microbiol Spectr ; 10(1): e0034521, 2022 02 23.
Artigo em Inglês | MEDLINE | ID: mdl-35196785

RESUMO

Polyphosphate (polyP) accumulation is an important trait of microorganisms. Implication of polyP accumulating bacteria (PAB) in enhanced biological phosphate removal, heavy metal sequestration, and dissolution of dental enamel is well studied. Phosphorous (P) accumulated within microbial biomass also regulates labile P in soil; however, abundance and diversity of the PAB in soil is still unexplored. Present study investigated the genetic and functional diversity of PAB in rhizosphere soil. Here, we report the abundance of Pseudomonas spp. as high PAB in soil, suggesting their contribution to global P cycling. Additional subset analysis of functional genes i.e., polyphosphate kinase (ppk) and exopolyphosphatase (ppx) in all PAB, indicates their significance in bacterial growth and metabolism. Distribution of functional genes in phylogenetic tree represent a more biologically realistic discrimination for the two genes. Distribution of ppx gene disclosed its phylogenetic conservation at species level, however, clustering of ppk gene of similar species in different clades illustrated its environmental condition mediated modifications. Selected PAB showed tolerance to abiotic stress and strong correlation with plant growth promotary (PGP) traits viz. phosphate solubilization, auxin and siderophore production. Interaction of PAB with A. thaliana enhanced the growth and phosphate status of the plant under salinity stress, suggestive of their importance in P cycling and stress alleviation. IMPORTANCE Study discovered the abundance of Pseudomonas genera as a high phosphate accumulator in soil. The presence of functional genes (polyphosphate kinase [ppk] and exopolyphosphatase [ppx]) in all PAB depicts their importance in polyphosphate metabolism in bacteria. Genetic and functional diversity reveals conservation of the ppx gene at species level. Furthermore, we found a positive correlation between PAB and plant growth promotary traits, stress tolerance, and salinity stress alleviation in A. thaliana.


Assuntos
Arabidopsis/crescimento & desenvolvimento , Polifosfatos/metabolismo , Pseudomonas/genética , Pseudomonas/metabolismo , Microbiologia do Solo , Hidrolases Anidrido Ácido/genética , Hidrolases Anidrido Ácido/metabolismo , Arabidopsis/microbiologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Variação Genética , Ácidos Indolacéticos/metabolismo , Fósforo/metabolismo , Fosfotransferases (Aceptor do Grupo Fosfato)/genética , Fosfotransferases (Aceptor do Grupo Fosfato)/metabolismo , Filogenia , Pseudomonas/classificação , Pseudomonas/enzimologia , Rizosfera , Sideróforos/biossíntese , Solo/química
2.
Genes (Basel) ; 12(5)2021 05 13.
Artigo em Inglês | MEDLINE | ID: mdl-34067973

RESUMO

Agaricus bisporus secretes siderophore to uptake environmental iron. Siderophore secretion in A. bisporus was enabled only in the iron-free minimal medium due to iron repression of hapX, a transcriptional activator of siderophore biosynthetic genes. Aiming to produce siderophore using conventional iron-containing complex media, we constructed a recombinant strain of A. bisporus that escapes hapX gene repression. For this, the A. bisporushapX gene was inserted next to the glyceraldehyde 3-phosphate dehydrogenase promoter (pGPD) in a binary vector, pBGgHg, for the constitutive expression of hapX. Transformants of A. bisporus were generated using the binary vector through Agrobacterium tumefaciens-mediated transformation. PCR and Northern blot analyses of the chromosomal DNA of the transformants confirmed the successful integration of pGPD-hapX at different locations with different copy numbers. The stable integration of pGPD-hapX was supported by PCR analysis of chromosomal DNA obtained from the 20 passages of the transformant. The transformants constitutively over-expressed hapX by 3- to 5-fold and sidD, a key gene in the siderophore biosynthetic pathway, by 1.5- to 4-fold in mRNA levels compared to the wild-type strain (without Fe3+), regardless of the presence of iron. Lastly, HPLC analysis of the culture supernatants grown in minimal medium with or without Fe3+ ions presented a peak corresponding to iron-chelating siderophore at a retention time of 5.12 min. The siderophore concentrations of the transformant T2 in the culture supernatant were 9.3-fold (-Fe3+) and 8-fold (+Fe3+) higher than that of the wild-type A. bisporus grown without Fe3+ ions, while no siderophore was detected in the wild-type supernatant grown with Fe3+. The results described here demonstrate the iron-independent production of siderophore by a recombinant strain of A. bisporus, suggesting a new application for mushrooms through molecular biological manipulation.


Assuntos
Agaricus/genética , Proteínas Fúngicas/genética , Engenharia Genética/métodos , Microbiologia Industrial/métodos , Ferro/metabolismo , Sideróforos/biossíntese , Fatores de Transcrição/genética , Agaricus/metabolismo , Proteínas Fúngicas/metabolismo , Vetores Genéticos/genética , Gliceraldeído-3-Fosfato Desidrogenases/genética , Regiões Promotoras Genéticas , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Sideróforos/genética , Fatores de Transcrição/metabolismo
3.
Nat Commun ; 12(1): 2511, 2021 05 04.
Artigo em Inglês | MEDLINE | ID: mdl-33947858

RESUMO

Non-ribosomal peptide synthetases are important enzymes for the assembly of complex peptide natural products. Within these multi-modular assembly lines, condensation domains perform the central function of chain assembly, typically by forming a peptide bond between two peptidyl carrier protein (PCP)-bound substrates. In this work, we report structural snapshots of a condensation domain in complex with an aminoacyl-PCP acceptor substrate. These structures allow the identification of a mechanism that controls access of acceptor substrates to the active site in condensation domains. The structures of this complex also allow us to demonstrate that condensation domain active sites do not contain a distinct pocket to select the side chain of the acceptor substrate during peptide assembly but that residues within the active site motif can instead serve to tune the selectivity of these central biosynthetic domains.


Assuntos
Aminoácidos/química , Domínio Catalítico , Peptídeo Sintases/química , Peptídeos/química , Sideróforos/química , Sequência de Aminoácidos , Cromatografia Líquida de Alta Pressão , Coenzima A/química , Cristalografia por Raios X , Expressão Gênica , Modelos Moleculares , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Mutação , Domínios Proteicos , Estrutura Terciária de Proteína , Alinhamento de Sequência , Sideróforos/biossíntese , Especificidade por Substrato , Thermobifida/química , Thermobifida/metabolismo
4.
Gastroenterology ; 160(6): 1970-1985, 2021 05.
Artigo em Inglês | MEDLINE | ID: mdl-33476671

RESUMO

BACKGROUND & AIMS: It is currently unclear whether reported changes in the gut microbiome are cause or consequence of inflammatory bowel disease (IBD). Therefore, we studied the gut microbiome of IBD-discordant and -concordant twin pairs, which offers the unique opportunity to assess individuals at increased risk of developing IBD, namely healthy cotwins from IBD-discordant twin pairs. METHODS: Fecal samples were obtained from 99 twins (belonging to 51 twin pairs), 495 healthy age-, sex-, and body mass index-matched controls, and 99 unrelated patients with IBD. Whole-genome metagenomic shotgun sequencing was performed. Taxonomic and functional (pathways) composition was compared among healthy cotwins, IBD-twins, unrelated patients with IBD, and healthy controls with multivariable (ie, adjusted for potential confounding) generalized linear models. RESULTS: No significant differences were observed in the relative abundance of species and pathways between healthy cotwins and their IBD-twins (false discovery rate <0.10). Compared with healthy controls, 13, 19, and 18 species, and 78, 105, and 153 pathways were found to be differentially abundant in healthy cotwins, IBD-twins, and unrelated patients with IBD, respectively (false discovery rate <0.10). Of these, 8 (42.1%) of 19 and 1 (5.6%) of 18 species, and 37 (35.2%) of 105 and 30 (19.6%) of 153 pathways overlapped between healthy cotwins and IBD-twins, and healthy cotwins and unrelated patients with IBD, respectively. Many of the shared species and pathways have previously been associated with IBD. The shared pathways include potentially inflammation-related pathways, for example, an increase in propionate degradation and L-arginine degradation pathways. CONCLUSIONS: The gut microbiome of healthy cotwins from IBD-discordant twin pairs displays IBD-like signatures. These IBD-like microbiome signatures might precede the onset of IBD. However, longitudinal follow-up studies are needed to infer a causal relationship.


Assuntos
Microbioma Gastrointestinal , Neoplasias Inflamatórias Mamárias/epidemiologia , Neoplasias Inflamatórias Mamárias/microbiologia , Adulto , Antígenos de Bactérias/biossíntese , Estudos de Casos e Controles , Estudos Transversais , Fezes/microbiologia , Feminino , Microbioma Gastrointestinal/fisiologia , Humanos , Masculino , Metagenômica , Pessoa de Meia-Idade , Países Baixos/epidemiologia , Fenótipo , Fatores de Risco , Sideróforos/biossíntese , Gêmeos Dizigóticos , Gêmeos Monozigóticos , Adulto Jovem
5.
J Biol Chem ; 296: 100160, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33273016

RESUMO

Pseudomonas aeruginosa and Staphylococcus aureus are opportunistic bacterial pathogens that cause severe infections in immunocompromised individuals and patients with cystic fibrosis. Both P. aeruginosa and S. aureus require iron to infect the mammalian host. To obtain iron, these pathogens may rely on siderophore-mediated ferric iron uptake, ferrous iron uptake, or heme uptake at different points during infection. The preferred iron source depends on environmental conditions, including the presence of iron-sequestering host-defense proteins. Here, we investigate how the presence of heme, a highly relevant iron source during infection, affects bacterial responses to iron withholding by the innate immune protein calprotectin (CP). Prior work has shown that P. aeruginosa is starved of iron in the presence of CP. We report that P. aeruginosa upregulates expression of heme uptake machinery in response to CP. Furthermore, we show that heme protects P. aeruginosa from CP-mediated inhibition of iron uptake and iron-starvation responses. We extend our study to a second bacterial pathogen, S. aureus, and demonstrate that CP also inhibits iron uptake and induces iron-starvation responses by this pathogen. Similarly to P. aeruginosa, we show that heme protects S. aureus from CP-mediated inhibition of iron uptake and iron-starvation responses. These findings expand our understanding of microbial responses to iron sequestration by CP and highlight the importance of heme utilization for bacterial adaptation to host iron-withholding strategies.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Transporte/genética , Heme/metabolismo , Ferro/metabolismo , Complexo Antígeno L1 Leucocitário/metabolismo , Pseudomonas aeruginosa/metabolismo , Sideróforos/biossíntese , Staphylococcus aureus/metabolismo , Adaptação Fisiológica , Carga Bacteriana , Proteínas de Bactérias/metabolismo , Ligação Competitiva , Proteínas de Transporte/metabolismo , Regulação Bacteriana da Expressão Gênica , Heme/farmacologia , Interações Hospedeiro-Patógeno/genética , Humanos , Ferro/farmacologia , Complexo Antígeno L1 Leucocitário/farmacologia , Ligação Proteica , Pseudomonas aeruginosa/efeitos dos fármacos , Pseudomonas aeruginosa/genética , Sideróforos/genética , Staphylococcus aureus/efeitos dos fármacos , Staphylococcus aureus/genética , Estresse Fisiológico
6.
ACS Chem Biol ; 16(1): 125-135, 2021 01 15.
Artigo em Inglês | MEDLINE | ID: mdl-33373180

RESUMO

Siderophores are iron-chelating molecules produced by microorganisms and plants to acquire exogenous iron. Siderophore biosynthetic enzymology often produces elaborate and unique molecules through unusual reactions to enable specific recognition by the producing organisms. Herein, we report the structure of two siderophore analogs from Agrobacterium fabrum strain C58, which we named fabrubactin (FBN) A and FBN B. Additionally, we characterized the substrate specificities of the NRPS and PKS components. The structures suggest unique Favorskii-like rearrangements of the molecular backbone that we propose are catalyzed by the flavin-dependent monooxygenase, FbnE. FBN A and B contain a 1,1-dimethyl-3-amino-1,2,3,4-tetrahydro-7,8-dihydroxy-quinolin (Dmaq) moiety previously seen only in the anachelin cyanobacterial siderophores. We provide evidence that Dmaq is derived from l-DOPA and propose a mechanism for the formation of the mature Dmaq moiety. Our bioinformatic analyses suggest that FBN A and B and the anachelins belong to a large and diverse siderophore family widespread throughout the Rhizobium/Agrobacterium group, α-proteobacteria, and cyanobacteria.


Assuntos
Agrobacterium/química , Sideróforos/biossíntese , Sideróforos/química , Monofosfato de Adenosina/metabolismo , Estrutura Molecular , Sideróforos/metabolismo , Análise Espectral/métodos , Especificidade por Substrato
7.
Arch Microbiol ; 203(3): 1195-1209, 2021 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-33231747

RESUMO

Late wilt disease, caused by Cephalosporium maydis in maize plant, is one of the main economical diseases in Egypt. Therefore, to cope with this problem, we investigated the potentiality of plant growth promoting rhizobacteria in controlling this disease. Six strains (Bacillus subtilis, B. circulance, B. coagulanse, B. licheniformis, Pseudomonas fluroscence and P. koreensis) were screened for siderophore production, and using dual plate culture method and greenhouse experiment, antagonistic activity against C. maydis was studied. Using two superior strains, single and dual inoculation treatments in maize were applied in field experiment during the 2018 and 2019 seasons. Results indicated that B. subtilis and P. koreensis strains had shown the most qualitative and quantitative assays for siderophore production and antagonistic activities. In greenhouse, the most effective treatments on the pre- and post-emergence damping off as well as growth promotion of maize were T3 treatment (inoculated with B. subtilis), and T8 treatment (inoculated with P. koreensis). In field experiment, T5 treatment (inoculated with a mixture of B. subtilis and P. koreensis) showed significant increases in catalase (CAT), peroxidase (POX) and polyphenol oxidase (PPO) activities, as well as total chlorophyll and carotenoids than control treatments during the two growing seasons. In the same way, the highest effect in reducing infection and increasing the thickness of the sclerenchymatous sheath layer surrounding the vascular bundles in maize stem was observed and these results were a reflection of the increase in yield and yield parameters.


Assuntos
Ascomicetos/efeitos dos fármacos , Bacillus subtilis/metabolismo , Pseudomonas/metabolismo , Sideróforos/biossíntese , Sideróforos/farmacologia , Zea mays/microbiologia
8.
Curr Drug Targets ; 21(13): 1326-1343, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32564749

RESUMO

Iron, which is described as the most basic component found in nature, is hard to be assimilated by microorganisms. It has become increasingly complicated to obtain iron from nature as iron (II) in the presence of oxygen oxidized to press (III) oxide and hydroxide, becoming unsolvable at neutral pH. Microorganisms appeared to produce organic molecules known as siderophores in order to overcome this condition. Siderophore's essential function is to connect with iron (II) and make it dissolvable and enable cell absorption. These siderophores, apart from iron particles, have the ability to chelate various other metal particles that have collocated away to focus the use of siderophores on wound care items. There is a severe clash between the host and the bacterial pathogens during infection. By producing siderophores, small ferric iron-binding molecules, microorganisms obtain iron. In response, host immune cells produce lipocalin 2 to prevent bacterial reuptake of siderophores loaded with iron. Some bacteria are thought to produce lipocalin 2-resistant siderophores to counter this risk. The aim of this article is to discuss the recently described roles and applications of bacterial siderophore.


Assuntos
Bactérias/metabolismo , Sideróforos/biossíntese , Sideróforos/fisiologia , Animais , Antibacterianos/química , Interações Hospedeiro-Patógeno , Humanos , Ferro/metabolismo , Lipocalina-2/metabolismo , Mitofagia , Sideróforos/química , Sideróforos/uso terapêutico , beta-Lactamas/química
9.
Sci Rep ; 10(1): 3587, 2020 02 27.
Artigo em Inglês | MEDLINE | ID: mdl-32107432

RESUMO

Iron is one of the most abundant elements on earth and essential for life. However, Fe3+ ions are rather insoluble and microorganisms such as fungi may use siderophores as strong chelators for uptake. In addition, free cytoplasmic iron is rather toxic and intracellular siderophores are used to control the toxicity. Siderophores are also important for iron storage. We studied two siderophore systems in the plant necrotrophic fungus Alternaria alternata and show that the non-ribosomal peptide synthase, Nps2, is required for the biosynthesis of intracellular ferricrocin, whereas Nps6 is needed for the formation of extracellular coprogen and coprogen B. Whereas nps2 was dispensable for growth on iron-depleted medium, nps6 was essential under those conditions. nps2 deletion caused an increase in spore formation and reduced pathogenicity on tomato. Our results suggest that A. alternata employs an external and an internal siderophore system to adapt to low iron conditions.


Assuntos
Alternaria/metabolismo , Ferro/metabolismo , Sideróforos/biossíntese , Alternaria/enzimologia , Alternaria/genética , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Regulação Fúngica da Expressão Gênica , Peptídeo Sintases/genética , Peptídeo Sintases/metabolismo
10.
Mol Plant Microbe Interact ; 33(4): 668-679, 2020 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-31928525

RESUMO

The present study demonstrates that a nascent polypeptide-associated complex α subunit (Nac1) functions as a transcriptional regulator and plays both positive and negative roles in a vast array of functions in Alternaria alternata. Gain- and loss-of-function studies reveal that Nac1 is required for the formation and germination of conidia, likely via the regulation of Fus3 and Slt2 mitogen-activated protein kinase (MAPK)-coding genes, both implicated in conidiation. Nac1 negatively regulates hyphal branching and the production of cell wall-degrading enzymes. Importantly, Nac1 is required for the biosynthesis of siderophores, a novel phenotype that has not been reported to be associated with a Nac in fungi. The expression of Nac1 is positively regulated by iron, as well as by the Hog1 MAPK and the NADPH-dependent oxidase (Nox) complex. Nac1 confers cellular susceptibility to reactive oxygen species (ROS) likely via negatively regulating the expression of the genes encoding Yap1, Skn7, Hog1, and Nox, all involved in ROS resistance. The involvement of Nac1 in sensitivity to glucose-, mannitol-, or sorbitol-induced osmotic stress could be due to its ability to suppress the expression of Skn7. The requirement of Nac1 in resistance to salts is unlikely mediated through the transcriptional activation of Hog1. Although Nac1 plays no role in toxin production, Nac1 is required for fungal full virulence. All observed deficiencies can be restored by re-expressing a functional copy of Nac1, confirming that Nac1 contributes to the phenotypes. Thus, a dynamic regulation of gene expression via Nac1 is critical for developmental, physiological, and pathological processes of A. alternata.


Assuntos
Alternaria , Estresse Oxidativo , Sideróforos , Virulência , Alternaria/genética , Proteínas Fúngicas/biossíntese , Proteínas Fúngicas/genética , Regulação Fúngica da Expressão Gênica , Estresse Oxidativo/genética , Sideróforos/biossíntese , Sideróforos/genética , Virulência/genética
11.
Int Microbiol ; 23(2): 277-286, 2020 May.
Artigo em Inglês | MEDLINE | ID: mdl-31655918

RESUMO

Siderophores (Gk iron carriers) are low molecular weight secondary metabolites produced by bacteria, fungi, and plants that have strong binding affinity for iron. Owing to their iron-chelating ability, they are produced mainly when the organism faces iron scarcity. The present study empirically investigated the importance of applying hydroxamate siderophore extracted from Aspergillus nidulans to the cells of Bacillus subtilis for bioremediation of cadmium salt. This investigation deals with siderophore-mediated intracellular Cd accumulation by bacterial cells, growth estimation, biochemical assays like lipid peroxidation, total protein content, carbohydrate content, and iron content estimation. In silico docking and STRING analyses revealed specific interaction between Aspergillus siderophore and receptors present on B. subtilis. Estimation of intracellular Cd by atomic absorption spectroscopy showed more accumulation of Cd ions by B. subtilis in the presence of hydroxamate siderophore. This suggests a possibility of confiscating environmental Cd2+ by utilizing metal chelation property of siderophores and hence can lead to emerging bioremediation mechanisms for heavy metals. In silico studies support experimental investigation and suggest higher affinity of siderophore for Cd ions as compared with ferric ions.


Assuntos
Bacillus subtilis/metabolismo , Cádmio/metabolismo , Metais Pesados/metabolismo , Sideróforos , Aspergillus nidulans/metabolismo , Biodegradação Ambiental , Ferro/metabolismo , Simulação de Acoplamento Molecular , Sideróforos/biossíntese , Sideróforos/metabolismo
12.
Nat Commun ; 10(1): 3702, 2019 08 16.
Artigo em Inglês | MEDLINE | ID: mdl-31420537

RESUMO

In Bacillus subtilis, robust biofilm formation requires large quantities of ferric iron. Here we show that this process requires preferential production of a siderophore precursor, 2,3-dihydroxybenzoate, instead of the siderophore bacillibactin. A large proportion of iron is associated extracellularly with the biofilm matrix. The biofilms are conductive, with extracellular iron potentially acting as electron acceptor. A relatively small proportion of ferric iron is internalized and boosts production of iron-containing enzymes involved in respiratory electron transfer and establishing strong membrane potential, which is key to biofilm matrix production. Our study highlights metabolic diversity and versatile energy generation strategies within B. subtilis biofilms.


Assuntos
Bacillus subtilis/metabolismo , Biofilmes , Transporte de Elétrons , Hidroxibenzoatos/metabolismo , Ferro/metabolismo , Proteínas de Bactérias/metabolismo , Ciclo do Ácido Cítrico , Glicólise , Potenciais da Membrana , Oligopeptídeos/metabolismo , Proteínas Repressoras/metabolismo , Sideróforos/biossíntese
13.
Biometals ; 32(3): 409-424, 2019 06.
Artigo em Inglês | MEDLINE | ID: mdl-30911924

RESUMO

Staphylococcus aureus is a versatile opportunistic human pathogen. Infection by this bacterium requires uptake of iron from the human host, but iron is highly restricted in this environment. Staphylococcus aureus iron sufficiency is achieved primarily through uptake of heme and high-affinity iron chelators, known as siderophores. Two siderophores (staphyloferrins) are produced and secreted by S. aureus into the extracellular environment to capture iron. Staphylococcus aureus expresses specific uptake systems for staphyloferrins and more general uptake systems for siderophores produced by other microorganisms. The S. aureus heme uptake system uses highly-specific cell surface receptors to extract heme from hemoglobin and hemoglobin-haptoglobin complexes for transport into the cytoplasm where it is degraded to liberate iron. Initially thought to be independent systems, recent findings indicate that these iron uptake pathways intersect. IruO is a reductase that releases iron from heme and some ferric-siderophores. Moreover, multifunctional SbnI produces a precursor for staphyloferrin B biosynthesis, and also binds heme to regulate expression of the staphyloferrin B biosynthesis pathway. Intersection of the S. aureus iron uptake pathways is hypothesized to be important for rapid adaptation to available iron sources. Components of the heme and siderophore uptake systems are currently being targeted in the development of therapeutics against S. aureus.


Assuntos
Heme/metabolismo , Ferro/metabolismo , Sideróforos/metabolismo , Staphylococcus aureus/metabolismo , Sideróforos/biossíntese , Sideróforos/farmacologia , Staphylococcus aureus/efeitos dos fármacos
14.
Biometals ; 32(1): 139-154, 2019 02.
Artigo em Inglês | MEDLINE | ID: mdl-30623317

RESUMO

Phytoplankton blooms can cause acute effects on marine ecosystems due either to their production of endogenous toxins or to their enormous biomass leading to major impacts on local economies and public health. Despite years of effort, the causes of these Harmful Algal Blooms are still not fully understood. Our hypothesis is that bacteria that produce photoactive siderophores may provide a bioavailable source of iron for phytoplankton which could in turn stimulate algal growth and support bloom dynamics. Here we correlate iron concentrations, phytoplankton cell counts, bacterial cell abundance, and copy numbers for a photoactive siderophore vibrioferrin biosynthesis gene in water samples taken from 2017 cruises in the Gulf of California, and the Pacific Ocean off the coast of northern Baja California as well as during a multiyear sampling at Scripps Pier in San Diego, CA. We find that bacteria producing the photoactive siderophore vibrioferrin, make up a surprisingly high percentage of total bacteria in Pacific/Gulf of California coastal waters (up to 9%). Vibroferrin's unique properties and the widespread prevalence of its bacterial producers suggest that it may contribute significantly to generating bioavailability of iron via photoredox reactions.


Assuntos
Citratos/biossíntese , Ferro/metabolismo , Marinobacter/química , Sideróforos/biossíntese , California , Citratos/química , Ferro/química , Marinobacter/metabolismo , México , Pirrolidinonas/química , Sideróforos/química
15.
Methods Mol Biol ; 1921: 3-19, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30694482

RESUMO

This chapter describes the methods for inducing, detecting, and purifying the Legionella pneumophila siderophore. The first protocol details the methods by which L. pneumophila is cultured to facilitate production of the siderophore, rhizoferrin. This chapter then describes how to purify siderophore from culture supernatants through sequential reversed-phase/weak-anion exchange chromatography and high-performance liquid chromatography. The next section describes assays which allow the detection of the iron-binding capability and the biological activity of the purified siderophore. Lastly, this chapter describes the growth of L. pneumophila in chemically defined liquid medium (CDM) containing various iron sources as a method to assess the iron requirements of L. pneumophila.


Assuntos
Ferro/metabolismo , Sideróforos/biossíntese , Bioensaio , Cromatografia Líquida de Alta Pressão , Meios de Cultivo Condicionados/química , Meios de Cultivo Condicionados/metabolismo , Ferro/química , Legionella pneumophila/metabolismo , Redes e Vias Metabólicas , Estrutura Molecular , Sideróforos/química , Sideróforos/isolamento & purificação
16.
Microbiologyopen ; 8(4): e00691, 2019 04.
Artigo em Inglês | MEDLINE | ID: mdl-30062714

RESUMO

Escherichia coli is a well-studied bacterium that can be found in many niches, such as industrial wastewater, where the concentration of nickel can rise to low-millimolar levels. Recent studies show that nickel exposure can repress pyochelin or induce pyoverdine siderophore production in Pseudomonas aueroginosa. Understanding the molecular cross-talk between siderophore production, metal homeostasis, and metal toxicity in microorganisms is critical for designing bioremediation strategies for metal-contaminated sites. Here, we show that high-nickel exposure prolongs lag phase duration as a result of low-intracellular iron levels in E. coli. Although E. coli cells respond to low-intracellular iron during nickel stress by maintaining high expression of iron uptake systems such as fepA, the demand for iron is not met due to a lack of siderophores in the extracellular medium during nickel stress. Taken together, these results indicate that nickel inhibits iron accumulation in E. coli by reducing the presence of enterobactin in the extracellular medium.


Assuntos
Enterobactina/biossíntese , Escherichia coli/efeitos dos fármacos , Escherichia coli/metabolismo , Níquel/farmacologia , Transporte Biológico , Escherichia coli/genética , Ferro/metabolismo , Sideróforos/biossíntese
17.
Appl Environ Microbiol ; 85(3)2019 02 01.
Artigo em Inglês | MEDLINE | ID: mdl-30446551

RESUMO

Iron (Fe) is the most important metal in biology. Despite its abundance, Fe is mostly present as a ferric form in soils, strongly limiting its bioavailability. To overcome the challenge of Fe acquisition, many microorganisms produce siderophores to retrieve Fe from natural sources. Another ubiquitous feature of bacteria in natural environments is biofilm formation. Previous studies showed that external Fe strongly influenced biofilm formation in several bacteria, suggesting that this microenvironment plays a mechanistic role in micronutrient acquisition for bacteria. Here, we applied a complementary set of analytical methods and deletion mutants to evaluate the role of biofilm formation, siderophore production, and their interaction in Fe homeostasis in Bacillus subtilis We observed that Fe homeostasis, i.e., active growth at a constant intracellular Fe concentration, requires both siderophore production and biofilm formation. Also, we report that in B. subtilis, both biofilm formation and siderophore production are required to achieve active Fe acquisition from the medium and to sustain normal growth. Furthermore, we provide evidence that the formation of biofilm slightly enhances the kinetics of Fe complexation by catechol siderophores and markedly improves siderophore use efficiency. These results provide new perspectives on the mechanism underlying siderophore-based acquisition of Fe in biofilm-forming bacteria.IMPORTANCE Iron acquisition is of fundamental importance for microorganisms, since this metal is generally poorly bioavailable under natural conditions. In the environment, most bacteria are found tightly packed within multicellular communities named biofilms. Here, using the soil Gram-positive bacterium Bacillus subtilis, we show that biofilm formation and the production of siderophores, i.e., small molecules specifically binding metals, are both essential to ensure Fe uptake from the medium and maintain cellular Fe homeostasis. The biofilm matrix appears to play an important role favoring the efficient usage of siderophores. Taken together, our results demonstrate a close link between biofilm formation and iron acquisition in B. subtilis, allowing a better comprehension of how bacteria can cope with metal limitation under environmental conditions.


Assuntos
Bacillus subtilis/fisiologia , Biofilmes , Ferro/metabolismo , Sideróforos/biossíntese , Bacillus subtilis/genética , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Transporte Biológico , Homeostase
18.
J Basic Microbiol ; 58(11): 957-967, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30168857

RESUMO

The physiological background of the unusually high cadmium tolerance (MIC50 > 2 mM) of Aspergillus fumigatus Af293 was investigated. The cadmium tolerance of the tested environmental and clinical A. fumigatus strains varied over a wide range (0.25 mM < MIC50 < 1 mM). Only the Af293 strain showed a MIC50 value of >2 mM, and this phenotype was accompanied by increased in vivo virulence in mice. A strong correlation was found between the cadmium tolerance and the transcription of the pcaA gene, which encodes a putative cadmium efflux pump. The cadmium tolerance also correlated with the iron tolerance and the extracellular siderophore production of the strains. In addition to these findings, Af293 did not show the synergism between iron toxicity and cadmium toxicity that was detected in the other strains. Based on these results, we suggest that the primary function of PcaA should be acting as a ferrous iron pump and protecting cells from iron overload. Nevertheless, the heterologous expression of pcaA may represent an attractive strain improvement strategy to construct fungal strains for use in biosorption or biomining processes or to prevent accumulation of this toxic metal in crops.


Assuntos
Aspergillus fumigatus/fisiologia , Cádmio/metabolismo , Adenosina Trifosfatases/genética , Animais , Aspergillus fumigatus/efeitos dos fármacos , Aspergillus fumigatus/patogenicidade , Cádmio/toxicidade , Proteínas de Transporte de Cátions/genética , Feminino , Proteínas Fúngicas/biossíntese , Proteínas Fúngicas/genética , Ferro/metabolismo , Ferro/toxicidade , Masculino , Camundongos , Camundongos Endogâmicos BALB C , Estresse Oxidativo/efeitos dos fármacos , Sideróforos/biossíntese , Transcrição Gênica , Virulência
19.
Molecules ; 23(8)2018 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-30115820

RESUMO

Iron has been shown to regulate biofilm formation, oxidative stress response and several pathogenic mechanisms in Stenotrophomonas maltophilia. Thus, the present study is aimed at identifying various iron acquisition systems and iron sources utilized during iron starvation in S. maltophilia. The annotations of the complete genome of strains K279a, R551-3, D457 and JV3 through Rapid Annotations using Subsystems Technology (RAST) revealed two putative subsystems to be involved in iron acquisition: the iron siderophore sensor and receptor system and the heme, hemin uptake and utilization systems/hemin transport system. Screening for these acquisition systems in S. maltophilia showed the presence of all tested functional genes in clinical isolates, but only a few in environmental isolates. NanoString nCounter Elements technology, applied to determine the expression pattern of the genes under iron-depleted condition, showed significant expression for FeSR (6.15-fold), HmuT (12.21-fold), Hup (5.46-fold), ETFb (2.28-fold), TonB (2.03-fold) and Fur (3.30-fold). The isolates, when further screened for the production and chemical nature of siderophores using CAS agar diffusion (CASAD) and Arnows's colorimetric assay, revealed S. maltophilia to produce catechol-type siderophore. Siderophore production was also tested through liquid CAS assay and was found to be greater in the clinical isolate (30.8%) compared to environmental isolates (4%). Both clinical and environmental isolates utilized hemoglobin, hemin, transferrin and lactoferrin as iron sources. All data put together indicates that S. maltophilia utilizes siderophore-mediated and heme-mediated systems for iron acquisition during iron starvation. These data need to be further confirmed through several knockout studies.


Assuntos
Ferro/metabolismo , Sideróforos/biossíntese , Stenotrophomonas maltophilia/metabolismo , Proteínas de Transporte/metabolismo , Catecóis/metabolismo , Regulação Bacteriana da Expressão Gênica , Heme/metabolismo , Hemina/metabolismo , Hemoglobinas/metabolismo , Lactoferrina/metabolismo , Stenotrophomonas maltophilia/genética , Transferrina/metabolismo
20.
Chem Commun (Camb) ; 54(70): 9813-9816, 2018 Aug 28.
Artigo em Inglês | MEDLINE | ID: mdl-30106398

RESUMO

An analogue of the bacterial siderophore desferrioxamine B (DFOB) containing a disulfide motif in the backbone was produced from Streptomyces pilosus cultures supplemented with cystamine. Cystamine competed against native 1,5-diaminopentane during assembly. DFOB-(SS)1[001] and its complexes with Fe(iii) or Ga(iii) were cleaved upon incubation with dithiothreitol. Compounds such as DFOB-(SS)1[001] and its thiol-containing cleavage products could expand antibiotic strategies and Au-S-based nanotechnologies.


Assuntos
Complexos de Coordenação/metabolismo , Desferroxamina/análogos & derivados , Desferroxamina/metabolismo , Dissulfetos/metabolismo , Compostos Férricos/metabolismo , Sideróforos/biossíntese , Cadaverina/metabolismo , Cistamina/metabolismo , Gálio/química , Ferro/química , Streptomyces/química
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