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1.
Food Environ Virol ; 11(4): 446-452, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31376023

RESUMO

Five human-specific markers were detected in 59-74% of 27 human fecal-source samples collected in Yamanashi Prefecture, Japan. Similarly, potential human-specific markers, crAssphage, pepper mild mottle virus (PMMoV), and tobacco mosaic virus were detected in 96-100% of samples, with crAssphage showing the maximum concentration of 12.03 log copies/L. However, these markers were detected in 100% (3/3) of pig fecal-source samples, suggesting their applicability as general fecal pollution markers. Microbial source tracking analysis demonstrated that the rivers are contaminated by human and pig fecal sources. CrAssphage showed higher marker concentrations in river water samples than PMMoV, suggesting the preference of crAssphage to PMMoV as a marker of fecal pollution.


Assuntos
Bacteriófagos/isolamento & purificação , Fezes/virologia , Rios/virologia , Vírus do Mosaico do Tabaco/isolamento & purificação , Tobamovirus/isolamento & purificação , Vírus/isolamento & purificação , Animais , Bacteriófagos/classificação , Bacteriófagos/genética , Biomarcadores/análise , Bovinos , Monitoramento Ambiental , Humanos , Japão , Especificidade da Espécie , Suínos , Vírus do Mosaico do Tabaco/classificação , Vírus do Mosaico do Tabaco/genética , Tobamovirus/classificação , Tobamovirus/genética , Vírus/classificação , Vírus/genética , Poluição da Água/análise
2.
Food Environ Virol ; 11(3): 274-287, 2019 09.
Artigo em Inglês | MEDLINE | ID: mdl-31087275

RESUMO

Monitoring of environmental water is crucial to protecting humans and animals from possible health risks. Although numerous human-specific viral markers have been designed to track the presence of human fecal contamination in water, they lack adequate sensitivity and specificity in different geographical regions. We evaluated the performances of six human-specific viral markers [Aichi virus 1 (AiV-1), human adenoviruses (HAdVs), BK and JC polyomaviruses (BKPyVs and JCPyVs), pepper mild mottle virus (PMMoV), and crAssphage] using 122 fecal-source samples collected from humans and five animal hosts in the Kathmandu Valley, Nepal. PMMoV and crAssphage showed high sensitivity (90-100%) with concentrations of 4.5-9.1 and 6.2-7.0 log10 copies/g wet feces (n = 10), respectively, whereas BKPyVs, JCPyVs, HAdVs, and AiV-1 showed poor performances with sensitivities of 30-40%. PMMoV and crAssphage were detected in 40-100% and 8-90%, respectively, of all types of animal fecal sources and showed no significantly different concentrations among most of the fecal sources (Kruskal-Wallis test, P > 0.05), suggesting their applicability as general fecal pollution markers. Furthermore, a total of 115 environmental water samples were tested for PMMoV and crAssphage to identify fecal pollution. PMMoV and crAssphage were successfully detected in 62% (71/115) and 73% (84/115) of water samples, respectively. The greater abundance and higher mean concentration of crAssphage (4.1 ± 0.9 log10 copies/L) compared with PMMoV (3.3 ± 1.4 log10 copies/L) indicated greater chance of detection of crAssphage in water samples, suggesting that crAssphage could be preferred to PMMoV as a marker of fecal pollution.


Assuntos
Fezes/virologia , Água Doce/virologia , Tobamovirus/isolamento & purificação , Vírus/isolamento & purificação , Animais , Biomarcadores/análise , Humanos , Nepal , Tobamovirus/classificação , Tobamovirus/genética , Tobamovirus/crescimento & desenvolvimento , Vírus/classificação , Vírus/genética , Vírus/crescimento & desenvolvimento , Poluição da Água/análise
3.
Arch Virol ; 164(3): 903-906, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-30652207

RESUMO

The complete genome sequence of a wild tomato mosaic virus (WTMV) isolate (named WTMV-Sn) was determined and identified in Solanum nigrum in China. The complete genome of WTMV-Sn is 9,659 nucleotides in length, excluding the poly(A) tail and encodes a polyprotein of 3,074 amino acids. This is the first report of WTMV infecting S. nigrum. Despite the high degree of sequence similarity between the WTMV-Sn and WTMV-XC-1 isolates, the 349 nucleotides at the 5' terminus of WTMV-Sn appear to have originated by recombination with another isolate. The recombination parent remains unknown, but the recombination region shares 74.57% sequence identity with isolate WTMV-Laichau, which is below the species demarcation threshold for the genus Potyvirus. A pathogenicity test showed that WTMV-Sn can infect tobacco. This suggests that variation in the P1 cistron of WTMV-Sn may contribute to its ability to infect S. nigrum.


Assuntos
Genoma Viral , Doenças das Plantas/virologia , Recombinação Genética , Solanum nigrum/virologia , Tobamovirus/genética , Tobamovirus/isolamento & purificação , Sequência de Bases , China , Fases de Leitura Aberta , Filogenia , Nicotiana/virologia , Tobamovirus/classificação , Sequenciamento Completo do Genoma
4.
Adv Virus Res ; 102: 89-117, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30266177

RESUMO

The study of tobacco mosaic virus and other tobamovirus species has greatly contributed to the development of all areas of virology, including virus evolution. Research with tobamoviruses has been pioneer, or particularly significant, in all major areas of research in this field, including: the characterization of the genetic diversity of virus populations, the mechanisms and rates of generation of genetic diversity, the analysis of the genetic structure of virus populations and of the factors that shape it, the adaptation of viruses to hosts and the evolution of host range, and the evolution of virus taxa and of virus-host interactions. Many of these continue to be hot topics in evolutionary biology, or have been identified recently as such, including (i) host-range evolution, (ii) predicting the overcoming of resistance in crops, (iii) trade-offs between virus life-history traits in virus evolution, and (iv) the codivergence of viruses and hosts at different taxonomical and spatial scales. Tobamoviruses may be particularly appropriate to address these topics with plant viruses, as they provide convenient experimental systems, and as the detailed knowledge on their molecular and structural biology allows the analysis of the mechanisms behind evolutionary processes. Also, the extensive information on parameters related to infection dynamics and population structure may facilitate the development of realistic models to predict virus evolution. Certainly, tobamoviruses will continue to be favorite system for the study of virus evolution.


Assuntos
Evolução Molecular , Genoma Viral , Especificidade de Hospedeiro , Modelos Genéticos , Plantas/virologia , Tobamovirus/genética , Coevolução Biológica , Resistência à Doença/genética , Variação Genética , Mutação , Filogenia , Doenças das Plantas/virologia , Recombinação Genética , Tobamovirus/classificação , Tobamovirus/metabolismo
5.
J Virol ; 92(24)2018 12 15.
Artigo em Inglês | MEDLINE | ID: mdl-30257999

RESUMO

The acquisition of new hosts provides a virus with more opportunities for transmission and survival but may be limited by across-host fitness trade-offs. Major causes of across-host trade-offs are antagonistic pleiotropy, that is, host differential phenotypic effects of mutations, a Genotype x Environment interaction, and epistasis, a Genotype x Genotype interaction. Here, we analyze if there are trade-offs, and what are the causes, associated with the acquisition by tobacco mild green mosaic virus (TMGMV) of a new host. For this, the multiplication of sympatric field isolates of TMGMV from its wild reservoir host Nicotiana glauca and from pepper crops was quantified in the original and the heterologous hosts. TMGMV isolates from N. glauca were adapted to their host, but pepper isolates were not adapted to pepper, and the acquisition of this new host was associated with a fitness penalty in the original host. Analyses of the collection of field isolates and of mutant genotypes derived from biologically active cDNA clones showed a role of mutations in the coat protein and the 3' untranslated region in determining within-host virus fitness. Fitness depended on host-specific effects of these mutations, on the genetic background in which they occurred, and on higher-order interactions of the type Genotype x Genotype x Environment. These types of effects had been reported to generate across-host fitness trade-offs under experimental evolution. Our results show they may also operate in heterogeneous natural environments and could explain why pepper isolates were not adapted to pepper and their lower fitness in N. glaucaIMPORTANCE The acquisition of new hosts conditions virus epidemiology and emergence; hence it is important to understand the mechanisms behind host range expansion. Experimental evolution studies have identified antagonistic pleiotropy and epistasis as genetic mechanisms that limit host range expansion, but studies from virus field populations are few. Here, we compare the performance of isolates of tobacco mild green mosaic virus from its reservoir host, Nicotiana glauca, and its new host, pepper, showing that acquisition of a new host was not followed by adaptation to it but was associated with a fitness loss in the original host. Analysis of mutations determining host-specific virus multiplication identified antagonistic pleiotropy, epistasis, and host-specific epistasis as mechanisms generating across-host fitness trade-offs that may prevent adaptation to pepper and cause a loss of fitness in N. glauca Thus, mechanisms determining trade-offs, identified under experimental evolution, could also operate in the heterogeneous environment in which natural plant virus populations occur.


Assuntos
Capsicum/virologia , Mutação , Nicotiana/virologia , Tobamovirus/classificação , Regiões 3' não Traduzidas , Proteínas do Capsídeo/genética , Epistasia Genética , Aptidão Genética , Genótipo , Especificidade de Hospedeiro , Filogenia , Tobamovirus/genética , Tobamovirus/isolamento & purificação
6.
Food Environ Virol ; 9(4): 487-497, 2017 12.
Artigo em Inglês | MEDLINE | ID: mdl-28646449

RESUMO

The Yucatan Peninsula of Mexico hosts a karst aquifer system that is the only source of freshwater for the area; however, it is vulnerable to human-mediated contamination. Pepper mild mottle virus (PMMoV) is one of the most abundant RNA viruses associated with human feces, making it a viable indicator for tracking fecal pollution in aquatic environments, including groundwater. In this study, groundwater samples collected from a karst aquifer from fresh and brackish water locations were analyzed for fecal indicator bacteria, somatic and male F+ specific coliphages, and PMMoV during the rainy and dry seasons. Total coliform bacteria were detected at all sites, whereas Escherichia coli were found at relatively low levels <40 MPN/100 ml. The highest average concentrations of somatic and male F+ specific coliphages were 920 and 330 plaque forming units per 100 ml, respectively, detected in freshwater during the rainy season. PMMoV RNA was detected in 85% of the samples with gene sequences sharing 99-100% of nucleotide identity with PMMoV sequences available in GenBank. Quantification of PMMoV genome copies (GC) by quantitative real-time PCR indicated concentrations ranging from 1.7 × 101 to 1.0 × 104 GC/L, with the highest number of GC detected during the rainy season. No significant correlation was observed between PMMoV occurrence by season or water type (p > 0.05). Physicochemical and indicator bacteria were not correlated with PMMoV concentrations. The abundance and prevalence of PMMoV in the karst aquifer may reflect its environmental persistence and its potential as a fecal indicator in this karst aquifer system.


Assuntos
Água Subterrânea/virologia , Tobamovirus/isolamento & purificação , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Fezes/microbiologia , Fezes/virologia , México , Reação em Cadeia da Polimerase em Tempo Real , Estações do Ano , Tobamovirus/classificação , Tobamovirus/genética
7.
Plant Physiol Biochem ; 109: 355-364, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27810675

RESUMO

Phytohormone levels and the expression of genes encoding key enzymes participating in hormone biosynthetic pathways were investigated in pepper leaves inoculated with two different tobamoviruses. Obuda pepper virus (ObPV) inoculation led to the development of hypersensitive reaction (incompatible interaction), while Pepper mild mottle virus (PMMoV) inoculation resulted in a systemic, compatible interaction. ObPV-inoculation markedly increased not only the levels of salicylic acid (SA) (73-fold) and jasmonic acid (8-fold) but also those of abscisic acid, indole-3-acetic acid, indole-3-butyric acid, cis-zeatin, cis-zeatin-9-riboside and trans-zeatin-9-riboside in the inoculated pepper leaves 3 days post inoculation. PMMoV infection increased only the contents of gibberellic acid and SA. Hormone contents did not change significantly after ObPV or PMMoV infection in non-infected upper leaves 20 days post inoculation. Concentrations of some brassinosteroids (BRs) and progesterone increased both in ObPV- and PMMoV inoculated leaves. ObPV inoculation markedly induced the expression of three phenylalanine ammonia-lyase (PAL) and a 1-aminocyclopropane-1-carboxylate oxidase (ACO) genes, while that of an isochorismate synthase (ICS) gene was not modified. PMMoV inoculation did not alter the expression of PAL and ICS genes but induced the transcript abundance of ACO although later than ObPV. Pre-treatment of pepper leaves with exogenous 24-epi-brassinolide (24-epi-BR) prior to ObPV-inoculation strongly mitigated the visible symptoms caused by ObPV. In addition, 24-epi-BR pre-treatment markedly altered the level of several hormones in pepper leaves following ObPV-inoculation. These data indicate that ObPV- and PMMoV-inoculations lead to intricate but well harmonized hormonal responses that are largely determined by the incompatible or compatible nature of plant-virus interactions.


Assuntos
Capsicum/metabolismo , Capsicum/virologia , Interações Hospedeiro-Patógeno/fisiologia , Doenças das Plantas/virologia , Tobamovirus/patogenicidade , Aminoácido Oxirredutases/genética , Aminoácido Oxirredutases/metabolismo , Capsicum/genética , Regulação Enzimológica da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Genes de Plantas , Interações Hospedeiro-Patógeno/genética , Transferases Intramoleculares/genética , Transferases Intramoleculares/metabolismo , Fenilalanina Amônia-Liase/genética , Fenilalanina Amônia-Liase/metabolismo , Reguladores de Crescimento de Plantas/metabolismo , Folhas de Planta/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Progesterona/metabolismo , Transdução de Sinais , Especificidade da Espécie , Tobamovirus/classificação
8.
Artigo em Inglês | MEDLINE | ID: mdl-27419274

RESUMO

The aims of this study were to examine the removal of bacteria and viruses by household point-of-use (POU) treatments and to apply a previously developed large-volume virus concentration method (∼20 L). First, the removal of microbes by household POU treatment was investigated in the laboratory. Second, the prevalence of viruses in drinking water sources for households and the removal efficiency of microbes by POU treatments in two suburban communities in Hanoi, Vietnam, were investigated. Indigenous pepper mild mottle virus (PMMoV) was used as the main target together with adenovirus, Aichi virus, enterovirus, F-specific bacteriophage genogroup 1, and Escherichia coli to investigate the removal efficiency of household treatments. The results from laboratory and field survey were compared. From the laboratory study, ceramic membranes were not effective for removing viruses and bacteria from water; pathogen reduction was less than 1.5 log10. By contrast, reverse osmosis (RO) devices reduced microbes by 3 to > 5 log10. In a field study, PMMoV was found to be the most prevalent waterborne virus. Household sand filtration was ineffective for removing E. coli, total coliforms and PMMoV; the reduction was less than 1 order of magnitude. Boiling the water and then filtering it with a ceramic membrane reduced E. coli by 3 orders of magnitude, but this was not effective for removing PMMoV. RO filtration was one of the promising methods for removing E. coli, total coliforms and PMMoV to below their detection limits in most of the samples studied. The removal of E. coli, total coliforms and PMMoV was >2.3, >4 and >3 log10, respectively. The laboratory results of virus removal efficiency by POU devices agreed with the field study. Due to the prevalence and characteristics of PMMoV, it is a strong candidate for an indigenous indicator to investigate the viral removal efficiency of household POU treatments.


Assuntos
Água Potável/virologia , Tobamovirus/isolamento & purificação , Microbiologia da Água , Purificação da Água/métodos , Qualidade da Água , Adenoviridae/isolamento & purificação , Enterovirus/isolamento & purificação , Escherichia coli/isolamento & purificação , Características da Família , Filtração , Genoma Viral , Kobuvirus/isolamento & purificação , Limite de Detecção , Análise de Sequência com Séries de Oligonucleotídeos , Osmose , Tobamovirus/classificação , Vietnã
9.
Arch Virol ; 161(2): 503-6, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26586328

RESUMO

In this study, we completed the whole genome sequence of a new tobamovirus isolated from tomato plants grown in greenhouses in Jordan during the spring of 2015. The 6393-nt single-stranded RNA (ssRNA) genome encodes four proteins, as do other tobamoviruses: two replication-related proteins of 126 kDa and 183 kDa, a 30-kDa movement protein (MP) and a 17.5-kDa coat protein (CP). Phylogenetic analysis showed that this virus does not group with either the tomato mosaic virus (ToMV) or the tobacco mosaic virus (TMV) clades. Instead, it stems from a branch leading to the TMV clade. Analysis of possible recombination events between this virus and representative isolates of closely related tomato-infecting tobamoviruses showed that at least one region originated by recombination. We provide evidence that we have identified a new tobamovirus, for which we propose the name "tomato brown rugose fruit virus".


Assuntos
Genoma Viral , RNA Viral/genética , Análise de Sequência de DNA , Solanum lycopersicum/virologia , Tobamovirus/classificação , Tobamovirus/isolamento & purificação , Análise por Conglomerados , Ordem dos Genes , Jordânia , Dados de Sequência Molecular , Filogenia , Homologia de Sequência , Tobamovirus/genética , Proteínas Virais/genética
10.
Arch Virol ; 160(11): 2867-72, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26323263

RESUMO

The complete 6243-nucleotide sequence of a cucumber green mottle mosaic virus (CGMMV) isolate from bottle gourd in Zhejiang province, China, was determined. A full-length cDNA clone of this isolate was constructed by inserting the cDNA between the 35S promoter and the ribozyme in the binary plasmid pCB301-CH. A suspension of an Agrobacterium tumefaciens EHA105 clone carrying this construct was highly infectious in Nicotiana benthamiana and bottle gourd. Another infectious clone containing the green fluorescence protein (GFP) reporter gene was also successfully constructed. This study is the first report of the efficient use of agroinoculation for generating CGMMV infections.


Assuntos
DNA Viral/genética , Proteínas de Fluorescência Verde/metabolismo , Doenças das Plantas/virologia , Tobamovirus/genética , Agrobacterium tumefaciens/genética , Agrobacterium tumefaciens/metabolismo , Cucumis sativus/virologia , Cucurbita , DNA Complementar/genética , DNA Complementar/metabolismo , DNA Viral/metabolismo , Genoma Viral , Proteínas de Fluorescência Verde/genética , Dados de Sequência Molecular , Filogenia , Nicotiana/virologia , Tobamovirus/classificação , Tobamovirus/isolamento & purificação , Tobamovirus/metabolismo
11.
Braz. j. microbiol ; 45(4): 1247-1253, Oct.-Dec. 2014. ilus, tab
Artigo em Inglês | LILACS | ID: lil-741274

RESUMO

Field survey of the cucurbit crops revealed a high incidence of Cucumber green mottle mosaic virus (CGMMV) in Khyber Pakhtunkhwa Province (KPK), Pakistan. Among the seven districts surveyed, average percent incidence of CGMMV was recorded up to 58.1% in district Nowshera, followed by 51.1% in district Charsada, 40.5% in district Swabi and 37.3% in district Mardan. In Swat and Dir districts average incidence CGMMV was recorded upto 31.2% and 29.4%, respectively. Among the different crops highest incidence in plain areas of KPK was recorded in bottle gourd (59.3%) followed by 56.3% in Squash, 54.5% in Pumpkin, 45.5% in Melon, 41.7% in Cucumber and 29.9% in Sponge gourd. In Northern hilly areas highest incidence of CGMMV (52.9%) was observed in pumpkin, followed by 49.6% in bottle gourd, 47.3% in squash, 45.1% in Melon 42.3% in cucumber and 41.6% in sponge gourd. Little variability was observed in the coat protein amino acid sequence identities of CGMMV Pakistan isolate, when compared with other reported isolates.


Assuntos
Cucurbitaceae/virologia , Doenças das Plantas/virologia , Tobamovirus/isolamento & purificação , Análise por Conglomerados , Proteínas do Capsídeo/genética , Variação Genética , Incidência , Dados de Sequência Molecular , Paquistão , Filogenia , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Tobamovirus/classificação , Tobamovirus/genética
12.
Genome Biol ; 15(5): R67, 2014 Apr 30.
Artigo em Inglês | MEDLINE | ID: mdl-24887356

RESUMO

BACKGROUND: Synthetic biology is a discipline that includes making life forms artificially from chemicals. Here, a DNA molecule was enzymatically synthesized in vitro from DNA templates made from oligonucleotides representing the text of the first Tobacco mosaic virus (TMV) sequence elucidated in 1982. No infectious DNA molecule of that seminal reference sequence exists, so the goal was to synthesize it and then build viral chimeras. RESULTS: RNA was transcribed from synthetic DNA and encapsidated with capsid protein in vitro to make synthetic virions. Plants inoculated with the virions did not develop symptoms. When two nucleotide mutations present in the original sequence, but not present in most other TMV sequences in GenBank, were altered to reflect the consensus, the derivative synthetic virions produced classic TMV symptoms. Chimeras were then made by exchanging TMV capsid protein DNA with Tomato mosaic virus (ToMV) and Barley stripe mosaic virus (BSMV) capsid protein DNA. Virus expressing ToMV capsid protein exhibited altered, ToMV-like symptoms in Nicotiana sylvestris. A hybrid ORF6 protein unknown to nature, created by substituting the capsid protein genes in the virus, was found to be a major symptom determinant in Nicotiana benthamiana. Virus expressing BSMV capsid protein did not have an extended host range to barley, but did produce novel symptoms in N. benthamiana. CONCLUSIONS: This first report of the chemical synthesis and artificial assembly of a plant virus corrects a long-standing error in the TMV reference genome sequence and reveals that unnatural hybrid virus proteins can alter symptoms unexpectedly.


Assuntos
Proteínas do Capsídeo/metabolismo , DNA Viral/síntese química , Nicotiana/virologia , RNA Viral/metabolismo , Vírus do Mosaico do Tabaco/genética , Clonagem Molecular , DNA Viral/normas , Doenças das Plantas/virologia , Biologia Sintética/métodos , Nicotiana/genética , Tobamovirus/classificação , Tobamovirus/genética , Vírion/patogenicidade , Vírion/fisiologia , Montagem de Vírus
13.
Arch Virol ; 159(4): 791-5, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24142274

RESUMO

The complete genome sequence of a tobamovirus was determined from a wild plant of yellow tailflower (Anthocercis littorea, family Solanaceae) that exhibited mild mottling and chlorosis on the leaves. The virus induced severe symptoms including systemic necrosis when inoculated to plants of three other solanaceous species. The viral genome was resequenced after passage in Nicotiana benthamiana. The two genomes were 6379 nucleotides in length, and they differed by three nucleotides. Phylogenetic analysis and the deduced architecture of the genome place the virus, provisionally named yellow tailflower mild mottle virus, with other tobamoviruses that infect solanaceous hosts.


Assuntos
Genoma Viral , Doenças das Plantas/virologia , RNA Viral/genética , Análise de Sequência de DNA , Solanaceae/virologia , Tobamovirus/classificação , Tobamovirus/isolamento & purificação , Análise por Conglomerados , Dados de Sequência Molecular , Filogenia , Nicotiana/virologia , Tobamovirus/genética , Austrália Ocidental
14.
Virus Res ; 163(1): 374-9, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21925550

RESUMO

Tobacco mosaic virus (TMV) is a positive-sense plant RNA virus which has a wide host range and a worldwide distribution. Other than a troublesome pathogen, TMV is regarded as a model system pioneering biologic research for a century. The tomato strain of TMV has been recognized to be a distinct tobamovirus as the tomato mosaic virus (ToMV). Recombination has been increasingly recognized as an important factor generating genetic diversity in many RNA viruses. However, it is still unclear whether recombination can function in driving the evolution of tobamoviruses. Herein, based on sequence comparison, we found three recombinants involving each viral gene, all of which might be derived from homologous or aberrant homologous recombination between TMV and ToMV. The study provided evidence that recombination did contribute to the genetic diversity of tobamoviruses.


Assuntos
RNA Viral/genética , Recombinação Genética , Tobamovirus/genética , Biologia Computacional/métodos , Variação Genética , Solanum lycopersicum/virologia , Nicotiana/virologia , Tobamovirus/classificação , Tobamovirus/isolamento & purificação
15.
Biochem Genet ; 47(7-8): 451-61, 2009 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-19449162

RESUMO

In China, the tobamovirus that infects oilseed rape has been misdiagnosed as Tobacco mosaic virus (TMV) based on its morphological similarity and serological relatedness. Recently, a tobamovirus has been isolated from oilseed rape in China, which we named Youcai mosaic virus Br (YoMV-Br), according to its biological and molecular characteristics. It had strong infectivity to Cruciferae but less to Solanaceae, Leguminosae, and Cucurbitaceae, and its virion morphology was consistent with that of the tobamoviruses. At high concentrations, it serologically cross reacted with TMV antiserum. The 3' terminal sequence (2,283 nucleotides) of YoMV-Br was determined, including the 3' noncoding region, the CP and MP genes, and the C-terminal part of the replicase gene. Between the MP and CP genes, 77 nucleotides overlapped. Compared with homologous regions of 21 recognized species of Tobamovirus, YoMV-Br had a much higher identity to crucifer species than to other tobamoviruses. Phylogenetic analysis demonstrated that YoMV-Br was closely related to the YoMV cluster of tobamoviruses and distantly to TMV, so that they likely belong to different strains of the same species.


Assuntos
Brassica rapa/virologia , Doenças das Plantas/virologia , Tobamovirus/classificação , Tobamovirus/fisiologia , Sequência de Bases , Brassica napus , Genoma Viral/genética , Filogenia , Tobamovirus/genética , Tobamovirus/isolamento & purificação
16.
Arch Virol ; 152(7): 1401-7, 2007.
Artigo em Inglês | MEDLINE | ID: mdl-17334946

RESUMO

Biological properties and the complete genome sequence of bell pepper mottle virus (BPeMV) were determined. The full genome of BPeMV consists of 6375 nucleotides. The BPeMV genomic RNA has four open reading frames (ORFs) encoding proteins of M(r) 126, 181, 30 and 18 kDa from the 5' to the 3' end, respectively. The lengths of the 5' nontranslated region (NTR) and the 3' NTR are 71 and 198 nucleotides, respectively. Overall identities for the four ORFs of BpeMV, at the nucleotide and amino acid levels, respectively, ranged from 36.0 to 80.6% and from 32.1 to 90.9%, compared to those of 22 other tobamoviruses. The CP gene of BPeMV displayed 43.5-73.5% and 32.1-82.4% identity to those of 22 other tobamoviruses at the nucleotide and amino acid levels, respectively. Phylogenetic analyses of four viral proteins clearly supported the conclusion that BPeMV-encoded proteins were related to those of members of the Solanaceae-infecting tobamoviruses. BPeMV was closely related to tomato mosaic virus, and tobacco mosaic virus and different from other tobamoviruses. Western blot analysis showed that BPeMV cross-reacted strongly with antibodies against members of Solanaceae-infecting tobamoviruses. These data represent the first molecular evidence supporting BPeMV as a separate species of the genus Tobamovirus.


Assuntos
Capsicum/virologia , Tobamovirus/classificação , Tobamovirus/genética , Sequência de Bases , Primers do DNA/genética , DNA Viral/genética , Genoma Viral , Dados de Sequência Molecular , Filogenia , Especificidade da Espécie
17.
Arch Virol ; 151(4): 787-91, 2006 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-16292595

RESUMO

The complete nucleotide sequence of a tobamovirus isolated from Impatiens New Guinea was determined. The genome was 6302 nt long, and its genomic organisation was similar to those of other crucufer tobamoviruses. Sequence comparisons with the corresponding sequences of other crucifer tobamoviruses revealed highest levels of identity with the ribgrass mosaic virus (Shanghai isolate). A small open reading frame putatively encoding a 4.5-kDa protein with a low degree of similarity to the ORF6 of tobacco mosaic virus was found nested in the movement protein gene.


Assuntos
Genoma Viral , Impatiens/virologia , Doenças das Plantas/virologia , Tobamovirus/genética , Sequência de Aminoácidos , Alemanha , Dados de Sequência Molecular , Fases de Leitura Aberta , Folhas de Planta/virologia , Alinhamento de Sequência , Especificidade da Espécie , Tobamovirus/classificação
18.
Arch Virol ; 148(11): 2115-35, 2003 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-14579173

RESUMO

A tobamovirus isolated from pepper crops in Bulgaria has been characterized, and is referred to below as P101. It was closely related to Paprika mild mottle virus (PaMMV) (Dutch isolate), based upon the serological relationship of its coat protein, and the nucleotide sequence analysis of the gene encoding the coat protein and the 3' non-coding region of the viral RNA. The coat proteins of the two isolates differ by two amino acids, and these substitutions may be responsible for the different reactivity of the isolates towards a polyclonal antiserum raised against the virion of the Dutch isolate. The biological behaviour of both isolates was similar in the hosts tested, except in pepper plants where P101 induced delayed and milder symptoms compared with PaMMV, although their accumulation levels were similar. In addition, we investigated the infection pattern of the two isolates in tomato plants. Both isolates accumulated in protoplasts as well as in inoculated leaves, although systemic invasion was limited. This limited spread was not due to activation of defense mechanism(s) in the plant, since the upper uninoculated leaves from P101-infected tomato plants were fully susceptible to challenge inoculation with the virus. Instead, it appears due to a restriction of long-distance movement, that could be overcome in tomato plants co-infected with Tobacco mosaic virus (TMV), but not with either Cucumber mosaic virus or Pepino mosaic virus. The ability of P101 to move systemically in the presence of TMV was not linked to enhanced accumulation of P101 at the cellular level. Thus, a tobamovirus but not the viruses tested from other genera could complement, in trans, the function(s) required for PaMMV to invade the upper uninoculated leaves. Paprika mild mottle virus strain B is proposed as the name for this new isolate.


Assuntos
Capsicum/virologia , Tobamovirus/isolamento & purificação , Regiões 3' não Traduzidas/química , Sequência de Aminoácidos , Sequência de Bases , Proteínas do Capsídeo/genética , Teste de Complementação Genética , Solanum lycopersicum/virologia , Dados de Sequência Molecular , Folhas de Planta/virologia , Caules de Planta/virologia , Protoplastos/virologia , Tobamovirus/classificação , Tobamovirus/genética
19.
J Virol Methods ; 106(1): 1-10, 2002 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-12367724

RESUMO

A procedure involving reverse transcription followed by the polymerase chain reaction (RT-PCR) using a single primer pair was developed for the detection of five tobamovirus species which are related serologically. Either with a subsequent restriction enzyme analysis (RT-PCR-RFLP) or with a RT-PCR using species specific primers the five species can be differentiated. To differentiate those species by serological means is time consuming and might give ambiguous results. With the example of the isolate OHIO V, which is known to break the resistance in a selection of Lycopersicon peruvianum, the suitability of the RT-PCR-RFLP technique to detect variability at the species level was shown. In sequence analysis 47 codons of the coat protein gene of this isolate were found to be mutated compared to a tobacco mosaic virus (TMV) coat protein gene sequence. Forty of these mutations were silent and did not change the amino acid sequence. Both procedures are suitable to detect mixed infections. In addition, the RT-PCR-RFLP give information on the relative amounts of the viruses that are present in a doubly infected plant. The RT-PCR-RFLP using general primers as well as the RT-PCR using species specific primers were proven to be useful for the diagnosis and control of the disease and will be helpful for resistance breeding, epidemiological investigations and plant virus collections.


Assuntos
Doenças das Plantas/virologia , Polimorfismo de Fragmento de Restrição , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Tobamovirus/classificação , Tobamovirus/isolamento & purificação , Sequência de Aminoácidos , Sequência de Bases , Proteínas do Capsídeo/genética , Reações Cruzadas , Primers do DNA , Dados de Sequência Molecular , Doenças das Plantas/economia , Análise de Sequência de DNA , Sorotipagem , Especificidade da Espécie , Tobamovirus/genética , Tobamovirus/imunologia
20.
Philos Trans R Soc Lond B Biol Sci ; 354(1383): 559-68, 1999 Mar 29.
Artigo em Inglês | MEDLINE | ID: mdl-10212935

RESUMO

The antigenic properties of the tobacco mosaic virus (TMV) have been studied extensively for more than 50 years. Distinct antigenic determinants called neotopes and cryptotopes have been identified at the surface of intact virions and dissociated coat protein subunits, respectively, indicating that the quaternary structure of the virus influences the antigenic properties. A correlation has been found to exist between the location of seven to ten residue-long continuous epitopes in the TMV coat protein and the degree of segmental mobility along the polypeptide chain. Immunoelectron microscopy, using antibodies specific for the bottom surface of the protein subunit, showed that these antibodies reacted with both ends of the stacked-disk aggregates of viral protein. This finding indicates that the stacked disks are bipolar and cannot be converted directly into helical viral rods as has been previously assumed. TMV epitopes have been mapped at the surface of coat protein subunits using biosensor technology. The ability of certain monoclonal antibodies to block the cotranslational disassembly of virions during the infection process was found to be linked to the precise location of their complementary epitopes and not to their binding affinity. Such blocking antibodies, which act by sterically preventing the interaction between virions and ribosomes may, when expressed in plants, be useful for controlling virus infection.


Assuntos
Epitopos/imunologia , Vírus do Mosaico do Tabaco/imunologia , Anticorpos Antivirais/imunologia , Especificidade de Anticorpos , Capsídeo/ultraestrutura , Cristalografia por Raios X , Epitopos/ultraestrutura , Microscopia Eletrônica , Plantas Tóxicas , Conformação Proteica , Nicotiana/virologia , Vírus do Mosaico do Tabaco/ultraestrutura , Tobamovirus/classificação
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