Deep annotation of long noncoding RNAs by assembling RNA-seq and small RNA-seq data.

Zhang, Jiaming; Hou, Weibo; Zhao, Qi; Xiao, Songling; Linghu, Hongye; Zhang, Lixin; Du, Jiawei; Cui, Hongdi; Yang, Xu; Ling, Shukuan; Su, Jianzhong; Kong, Qingran

Zhang, Jiaming; Hou, Weibo; Zhao, Qi; Xiao, Songling; Linghu, Hongye; Zhang, Lixin; Du, Jiawei; Cui, Hongdi; Yang, Xu; Ling, Shukuan; Su, Jianzhong; Kong, Qingran.

Afiliação

Zhang J; Oujiang Laboratory, Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang Province, China; Oujiang Laboratory, Zhejiang Lab for Regenerative
Hou W; Oujiang Laboratory, Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Zhao Q; Oujiang Laboratory, Zhejiang Lab for Regenerative Medicine, Vision and Brain Health, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Xiao S; Oujiang Laboratory, Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Linghu H; Oujiang Laboratory, Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Zhang L; Oujiang Laboratory, Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Du J; Oujiang Laboratory, Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Cui H; Oujiang Laboratory, Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Yang X; Oujiang Laboratory, Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Ling S; Oujiang Laboratory, Zhejiang Lab for Regenerative Medicine, Vision and Brain Health, Wenzhou Medical University, Wenzhou, Zhejiang Province, China. Electronic address: sh2ling@126.com.
Su J; Oujiang Laboratory, Zhejiang Lab for Regenerative Medicine, Vision and Brain Health, Wenzhou Medical University, Wenzhou, Zhejiang Province, China. Electronic address: sujz@wmu.edu.cn.
Kong Q; Oujiang Laboratory, Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, Zhejiang Province, China. Electronic address: kqr721726@163.com.

J Biol Chem ; 299(9): 105130, 2023 09.

Article em En | MEDLINE | ID: mdl-37543366

Assuntos

Anotação de Sequência Molecular; RNA Longo não Codificante; RNA-Seq; Animais; Desenvolvimento Embrionário/genética; Mamíferos/embriologia; Mamíferos/genética; Anotação de Sequência Molecular/métodos; Regiões Promotoras Genéticas/genética; Reprodutibilidade dos Testes; Retroviridae/genética; RNA Longo não Codificante/genética; RNA-Seq/métodos; Sítio de Iniciação de Transcrição; Transcriptoma/genética; Proteínas de Sinalização YAP/genética; Proteínas de Sinalização YAP/metabolismo

Palavras-chave

ERV-lncRNA; full-length transcript; iPSC; mouse embryo development; transcriptome annotation

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Texto completo: 1 Coleções: 01-internacional Temas: Geral Base de dados: MEDLINE Assunto principal: Anotação de Sequência Molecular / RNA Longo não Codificante / RNA-Seq Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Revista: J Biol Chem Ano de publicação: 2023 Tipo de documento: Article

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