TCOD: an integrated resource for tropical crops.

Tropical crops are vital for tropical agriculture, with resource scarcity, functional diversity and extensive market demand, providing considerable economic benefits for the world's tropical agriculture-producing countries. The rapid development of sequencing technology has promoted a milestone in tropical crop research, resulting in the generation of massive amount of data, which urgently needs an effective platform for data integration and sharing. However, the existing databases cannot fully satisfy researchers' requirements due to the relatively limited integration level and untimely update. Here, we present the Tropical Crop Omics Database (TCOD, https://ngdc.cncb.ac.cn/tcod), a comprehensive multi-omics data platform for tropical crops. TCOD integrates diverse omics data from 15 species, encompassing 34 chromosome-level de novo assemblies, 1 255 004 genes with functional annotations, 282 436 992 unique variants from 2048 WGS samples, 88 transcriptomic profiles from 1997 RNA-Seq samples and 13 381 germplasm items. Additionally, TCOD not only employs genes as a bridge to interconnect multi-omics data, enabling cross-species comparisons based on homology relationships, but also offers user-friendly online tools for efficient data mining and visualization. In short, TCOD integrates multi-species, multi-omics data and online tools, which will facilitate the research on genomic selective breeding and trait biology of tropical crops.

[Novel method for dynamic monitoring and early-warning on wild resources of traditional Chinese medicines based on price ratio between drug and foodstuff].

OBJECTIVE: To probe into the new idea along with establishment of a novel method for dynamic monitoring and early-warning on the wild resources of traditional Chinese medicines (TCMs). METHOD: The alterations of wild traditional Chinese medicinal resources were assessed through the price ratio between drug and foodstuff (PRDF) indicating the balance between supply and demand of the specific TCMs, referred to the price ration between pork to foodstuff which is used in national monitoring to the balance between pork supply and demand. RESULT: Since the price of rice was tightly controlled by government, it was selected as a relatively stable reference to build the PRDF in order to take away the non-marketing influence to TCMs price such as CPI and inflation rate. The modified relative alteration trend of TCMs price had been researched through comparing different formulae to build PRDF, including absolute average month price of TCMs, month average price ratio of TCMs to foodstuff (rice) , month-on-month change of TCMs to rice, year-on-year change of TCMs to rice, and difference in value of period-on-period change (DVPPC). In the research, Cordyceps, Glycyrrhiza and totally five herbs were selected as model drugs and the price data were collected from 2002 to 2008. The results showed that DVPPC calculated of relative long time window was more sensitive and stable to reflect the relative alteration trend of TCMs price. For instance, the DVPPC of Ligustici showed continuously increase trend in recent years. This suggested appearance of unbalance between supply and demand of Ligustici, and forced policy intervention to maintain reasonable and continuable utilization of Ligustici resource. CONCLUSION: The proposed method and the formula of DVPPC revealed some useful guidance for dynamic monitoring the wild resources of TCMs.

[Investigation on medicinal plant resources of Glycyrrhiza uralensis in China and chemical assessment of its underground part].

OBJECTIVE: In order to find out the current situation of wild and cultivated resources of Glycyrrhiza uralensis, at the same time, the contents of glycyrrhizic acid and liquiritin were detected by HPLC. METHOD: Field investigation was carried out, and chemical composition of collected underground part was analyzed in laboratory. RESULT: The natural distribution range of wild G. uralensis in China has no significant change. We can still find its distribution in the distribution areas recorded ten years ago, but the intensity of species group has greatly changed. Estimated according to the survey data obtained by quadrat reserves and distribution (i.e., reserves per unit area) or cultivation area, that the current wild reserves is less than 500,000 tons and the less than 150,000 tons for cultivated. The analysis results of glycyrrhizic acid and liquiritin contents in 99 wild samples of collected underground part show that the average contents of glycyrrhizic acid and liquiritin were respectively 34.8, 17.3 mg x g(-1), of which 61.6% samples can reach the standard (not less than 20, 10 mg x g(-1)) marked by "Chinese Pharmacopoeia" (2005 edition); The average glycyrrhizic acid and liquiritin contents of cultivated samples were respectively 28.5, 15.3 mg x g(-1), which were much lower than the wild samples. CONCLUSION: We should enhance efforts in protecting the wild resources, strive to improve the quality of cultivated herbs, vigorously develop high-quality G. uralensis cultivation industries and promote farmers income to resolve the resource crisis, which is the reasonable way to achieve continuable use of G. uralensis resources.

[Enhance technique researches on Glycyrrhiza industries, promote three-dimensional rural economic development in three-north areas].

OBJECTIVE: To analyze the current situation about Glycyrrhiza resources, summarize the research achievements on Glycyrrhiza relative industries, and indentify the importance of developing Glycyrrhiza industries to promote the three-dimensional rural economic development in the Three-North areas. METHOD: Literatures and documents were referred to, in combination with overview and analysis of the outcomes and achievements of our group. RESULT AND CONCLUSION: The gap between supply and demand of resources is enlarged continuously. To develop high-quality Glycyrrhiza cultivation is the most powerful and effective measure to protect wild resources and the environment and promote the three-dimensional rural economic development in the Three-North areas.