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1.
Mol Imaging Biol ; 22(6): 1532-1542, 2020 12.
Artigo em Inglês | MEDLINE | ID: mdl-32789648

RESUMO

PURPOSE: Oral squamous cell carcinoma (OSCC) has not seen a substantial improvement in patient survival despite therapeutic advances, making accurate detection and characterization of the disease a clinical priority. Here, we aim to demonstrate the effectiveness of magnetic resonance imaging (MRI) with the targeted MRI contrast agent MT218 specific to extradomain-B fibronectin (EDB-FN) in the tumor microenvironment for detection and characterization of aggressive OSCC tumors. PROCEDURES: EDB-FN expression was evaluated in human normal tongue and OSCC specimens with immunohistochemistry. Invasiveness of human CAL27, HSC3, and SCC4 OSCC cells was analyzed with spheroid formation and transwell assays. EDB-FN expression in the cells was analyzed with semiquantitative real-time PCR, western blotting, and a peptide binding study with confocal microscopy. Contrast-enhanced MRI with MT218 was performed on subcutaneous OSCC mouse models at a dose of 0.04 mmol/kg, using gadoteridol (0.1 mmol/kg) as a control. RESULTS: Strong EDB-FN expression was observed in human untreated primary and metastatic OSCC, reduced expression in treated OSCC, and little expression in normal tongue tissue. SCC4 and HSC3 cell lines demonstrated high invasive potential with high and moderate-EDB-FN expression, respectively, while CAL27 showed little invasive potential and low-EDB-FN expression. In T1-weighted MRI, MT218 produced differential contrast enhancement in the subcutaneous tumor models in correlation with EDB-FN expression in the cancer cells. Enhancement in the high-EDB-FN tumors was greater with MT218 at 0.04 mmol/kg than gadoteridol at 0.1 mmol/kg. CONCLUSIONS: The results suggest EDB-FN has strong potential as an imageable biomarker for aggressive OSCC. MRMI results demonstrate the effectiveness of MT218 and the potential for differential diagnostic imaging of oral cancer for improving the management of the disease.


Assuntos
Fibronectinas/química , Espectroscopia de Ressonância Magnética , Imagem Molecular , Neoplasias Bucais/diagnóstico por imagem , Neoplasias Bucais/diagnóstico , Animais , Carcinoma de Células Escamosas/diagnóstico , Carcinoma de Células Escamosas/diagnóstico por imagem , Carcinoma de Células Escamosas/genética , Carcinoma de Células Escamosas/patologia , Linhagem Celular Tumoral , Proliferação de Células , Meios de Contraste/química , Feminino , Regulação Neoplásica da Expressão Gênica , Humanos , Camundongos Nus , Neoplasias Bucais/genética , Domínios Proteicos , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Fatores de Risco , Ensaios Antitumorais Modelo de Xenoenxerto
2.
Aust N Z J Obstet Gynaecol ; 59(3): 403-407, 2019 06.
Artigo em Inglês | MEDLINE | ID: mdl-30175874

RESUMO

BACKGROUND: Threatened preterm labour is a common reason for medical transfer from remote communities; however, many transferred women do not deliver preterm. A tool for prediction of preterm birth such as fetal fibronectin may reduce transfers and related social and economic costs. AIM: To review the use of fetal fibronectin testing in women transferred for threatened preterm labour from Cape York to Cairns Hospital between 2011 and 2015 and determine the role testing could play in reducing transfers and associated costs. MATERIALS/METHODS: Records from the Royal Flying Doctor Service and Cairns Hospital were accessed. Women transferred solely for threatened preterm labour were included in the study. Fetal fibronectin testing, hospital admission, outpatient stays and birth outcome data were collated and analysed. Costs were assigned using the National Hospital Cost Data Collection, round 19. RESULTS: Forty-seven women were included in the study; however, only 20 underwent fetal fibronectin testing. Transfer of 30 women who had either a negative test or were not tested but delivered at term resulted in 41 inpatient nights and 443 excess outpatient nights, costing an estimated AU$57 408. Aeromedical transfers were estimated to cost a further $151 500. CONCLUSION: Adherence to clinical guidelines and greater availability and use of fetal fibronectin testing in Cape York have the potential to reduce aeromedical transfers for threatened preterm labour. Substantial inpatient and excess outpatient stays could be avoided with associated reduction in health system and social costs. Strategies to improve adherence to guidelines and increase access to testing are required.


Assuntos
Resgate Aéreo , Fibronectinas/química , Trabalho de Parto Prematuro/diagnóstico , Diagnóstico Pré-Natal/economia , Adulto , Análise Custo-Benefício , Feminino , Humanos , Gravidez , Queensland , Adulto Jovem
3.
Langmuir ; 34(33): 9847-9855, 2018 08 21.
Artigo em Inglês | MEDLINE | ID: mdl-30044634

RESUMO

The orientation and conformation of adhesive proteins after adsorption play a central role in cell-binding bioactivity. Fibronectin (Fn) holds two peptide sequences that favor cell adhesion: the Arg-Gly-Asp (RGD) loop on the tenth type-III domain (Fn-III10) and the Pro-His-Ser-Arg-Asn (PHSRN) synergy site on the ninth type-III domain (Fn-III9). Herein, adsorption of Fn fragments (Fn-III10 and Fn-III9-10) on self-assembled monolayers (SAMs) carrying various functional groups (-COOH, -NH2, -CH3, and -OH) was investigated by the Monte Carlo method and molecular dynamics simulation in order to understand its mediation effect on cell adhesion. The results demonstrated that Fn-III9 could enhance the stiffness of the Fn molecule and further fix the adsorption orientation. The RGD site of the Fn fragment appeared to be deactivated on hydrophobic surfaces (CH3-SAM) because of the binding of adjacent nonpolar residues on surfaces, whereas charged surfaces (COOH-SAM and NH2-SAM) and hydrophilic surfaces (OH-SAM) were conducive to the formation of cell-binding-favorable orientation for Fn fragments. The cell adhesion capability of Fn fragments was highly improved on positively charged surfaces (NH2-SAM) and hydrophilic surfaces because of the advantageous steric structure and orientation of both RGD and PHSRN sites. This work provides an insight into the interplay at the atomic scale between protein adsorption and surface chemistry for designing biologically responsive substrate surfaces.


Assuntos
Fibronectinas/química , Adsorção , Adesão Celular , Domínio de Fibronectina Tipo III , Simulação de Dinâmica Molecular , Método de Monte Carlo , Eletricidade Estática
4.
Mol Pharm ; 14(11): 3906-3915, 2017 11 06.
Artigo em Inglês | MEDLINE | ID: mdl-28976766

RESUMO

Contrast enhanced MRI is commonly used in imaging and treatment planning of prostate cancer. However, no tumor targeting contrast agent is commercially available for accurate detection and characterization of prostate cancer with MRI. Extradomain B fibronectin (EDB-FN), an oncoprotein present in aggressive tumors, is a promising molecular target for detection and stratification of high-risk prostate cancer. In this work, we have identified four small peptides (GVK, IGK, SGV, and ZD2) specific to EDB-FN for tumor targeting. In silico simulations of the binding patterns and affinities of peptides to the EDB protein fragment revealed different binding site to different peptide in the ligand-receptor interactions. Tumor specificity and organ distribution of the peptides were assessed using fluorescence imaging in male mice bearing PC-3 human prostate cancer xenografts. Targeted contrast agents were synthesized by conjugating tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA) to the peptides in the solid phase, followed by complexation with GdCl3. The contrast agents were characterized by MALDI-TOF mass spectrometry and relaxivity measurements. All four peptide Gd-DOTA conjugates resulted in robust tumor contrast enhancement in MR imaging of the PC3 mouse prostate cancer model. The peptide Gd-DOTA conjugates specific to EDB-FN are promising targeted small molecular macrocyclic contrast agents for MR molecular imaging of prostate cancer.


Assuntos
Meios de Contraste/química , Fibronectinas/química , Imageamento por Ressonância Magnética/métodos , Peptídeos/química , Neoplasias da Próstata/diagnóstico por imagem , Animais , Humanos , Masculino , Camundongos , Camundongos Endogâmicos BALB C , Camundongos Nus
5.
Tissue Eng Part A ; 21(19-20): 2504-14, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26101808

RESUMO

BACKGROUND: Scaffolds are a key component of tissue-engineered heart valves (TEHVs). Several approaches had been adopted in the design of scaffolds using both natural and synthetic resources. We have investigated the suitability of parylene C (PC), a vapor deposited polymeric material, for the use as a scaffold in TEHV. AIMS: To evaluate the adsorption of extracellular matrix components onto plasma-activated PC and study the biocompatibility of PC by measuring cellular adhesion, viability, apoptosis, and phenotypic expression of valve endothelial and interstitial cells. Finally, the mechanical properties of PC were compared with those of native aortic valve cusp tissue. METHODS: PC slides were plasma activated and then coated with gelatin, type I collagen, or fibronectin. Porcine pulmonary valve endothelial and interstitial cells were then grown on plasma oxidized PC with different types of coatings and their adhesion was observed after 20 h of incubation. Cell viability was tested using the MTS assay, and apoptosis was estimated using TUNEL staining. The mechanical properties of PC and valve tissue were measured using a Bose Mechanical Tester. Finally, cell-seeded PC films were exposed to pulsatile pressure and aortic shear stress, respectively, to test their durability in a dynamic environment. RESULTS: Our findings show that collagen and fibronectin could bind to plasma oxidized PC. Both valve endothelial and interstitial cells adhered to protein-coated ECM. PC had a profile of mechanical stiffness and ultimate tensile strength that were comparable with or in excess of those seen in porcine aortic valve cusps. Cells were still attached to PC films after 3 days of exposure to up to 50 mmHg pulsatile pressure or aortic levels of shear stress. CONCLUSION: PC is a promising candidate for use as a scaffold in tissue engineering heart valves. Additional studies are required to determine both the durability and long-term performance of cell-seeded PC when in a similar hemodynamic environment to that of the aortic valve.


Assuntos
Polímeros/química , Engenharia Tecidual/métodos , Xilenos/química , Animais , Adesão Celular/fisiologia , Proliferação de Células/fisiologia , Células Cultivadas , Colágeno/química , Fibronectinas/química , Gelatina/química , Próteses Valvulares Cardíacas , Marcação In Situ das Extremidades Cortadas , Suínos , Alicerces Teciduais/química
6.
Microvasc Res ; 98: 197-217, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24462603

RESUMO

Early detection of malignant tumors plays a crucial role in the survivability chances of the patient. Therefore, new and innovative tumor detection methods are constantly searched for. Tumor-specific magnetic-core nano-particles can be used with an alternating magnetic field to detect and treat tumors by hyperthermia. For the analysis of the method effectiveness, the bio-heat transfer between the nanoparticles and the tissue must be carefully studied. Heat diffusion in biological tissue is usually analyzed using the Pennes Bio-Heat Equation, where blood perfusion plays an important role. Malignant tumors are known to initiate an angiogenesis process, where endothelial cell migration from neighboring vasculature eventually leads to the formation of a thick blood capillary network around them. This process allows the tumor to receive its extensive nutrition demands and evolve into a more progressive and potentially fatal tumor. In order to assess the effect of angiogenesis on the bio-heat transfer problem, we have developed a discrete stochastic 3D model & simulation of tumor-induced angiogenesis. The model elaborates other angiogenesis models by providing high resolution 3D stochastic simulation, capturing of fine angiogenesis morphological features, effects of dynamic sprout thickness functions, and stochastic parent vessel generator. We show that the angiogenesis realizations produced are well suited for numerical bio-heat transfer analysis. Statistical study on the angiogenesis characteristics was derived using Monte Carlo simulations. According to the statistical analysis, we provide analytical expression for the blood perfusion coefficient in the Pennes equation, as a function of several parameters. This updated form of the Pennes equation could be used for numerical and analytical analyses of the proposed detection and treatment method.


Assuntos
Hipertermia Induzida/métodos , Nanopartículas/química , Neoplasias/patologia , Neoplasias/terapia , Neovascularização Patológica , Perfusão , Animais , Quimiotaxia , Simulação por Computador , Matriz Extracelular/química , Fibronectinas/química , Temperatura Alta , Humanos , Imageamento Tridimensional , Campos Magnéticos , Modelos Biológicos , Distribuição Normal , Processos Estocásticos
7.
Nanotechnology ; 25(6): 065101, 2014 Feb 14.
Artigo em Inglês | MEDLINE | ID: mdl-24434703

RESUMO

We address the enhanced bone growth on designed nanocrystalline zirconia implants as reported by in vivo experiments. In vitro experiments demonstrate that the activation of adhesive proteins on nanoengineered zirconia stimulates cell adhesion and growth as shown by confocal microscopy. Fibrillar fibronectin (FN) forms a matrix assembly on the nanostructured surface in the cell adhesion process. We discuss the importance of FN dimer activation due to its immobilization on the designed nanocrystalline ZrO2 implant fabricated by ion beam assisted deposition. The Monte-Carlo analysis indicates that FN activation on the surface can be promoted by selective electrostatic interactions between negatively charged ZrO2 surface patches and oppositely charged FN domains.


Assuntos
Adesão Celular/efeitos dos fármacos , Proliferação de Células/efeitos dos fármacos , Fibronectinas/química , Nanotecnologia/métodos , Zircônio/química , Adsorção , Animais , Materiais Biocompatíveis , Células da Medula Óssea/efeitos dos fármacos , Membrana Celular/metabolismo , Simulação por Computador , Cristalização , Dimerização , Microscopia Confocal , Método de Monte Carlo , Estrutura Terciária de Proteína , Ratos , Eletricidade Estática , Células Estromais/efeitos dos fármacos , Propriedades de Superfície
8.
Integr Biol (Camb) ; 5(8): 1026-35, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23784144

RESUMO

Collective behavior refers to the emergence of complex migration patterns over scales larger than those of the individual elements constituting a system. It plays a pivotal role in biological systems in regulating various processes such as gastrulation, morphogenesis and tissue organization. Here, by combining experimental approaches and numerical modeling, we explore the role of cell density ('crowding'), strength of intercellular adhesion ('cohesion') and boundary conditions imposed by extracellular matrix (ECM) proteins ('constraints') in regulating the emergence of collective behavior within epithelial cell sheets. Our results show that the geometrical confinement of cells into well-defined circles induces a persistent, coordinated and synchronized rotation of cells that depends on cell density. The speed of such rotating large-scale movements slows down as the density increases. Furthermore, such collective rotation behavior depends on the size of the micropatterned circles: we observe a rotating motion of the overall cell population in the same direction for sizes of up to 200 µm. The rotating cells move as a solid body, with a uniform angular velocity. Interestingly, this upper limit leads to length scales that are similar to the natural correlation length observed for unconfined epithelial cell sheets. This behavior is strongly altered in cells that present a downregulation of adherens junctions and in cancerous cell types. We anticipate that our system provides a simple and easy approach to investigate collective cell behavior in a well-controlled and systematic manner.


Assuntos
Técnicas de Cultura de Células , Movimento Celular/fisiologia , Células Epiteliais/citologia , Animais , Adesão Celular , Linhagem Celular Tumoral , Membrana Celular , Simulação por Computador , Cães , Transição Epitelial-Mesenquimal , Fibronectinas/química , Humanos , Células Madin Darby de Rim Canino , Método de Monte Carlo
9.
Biophys J ; 101(7): 1740-8, 2011 Oct 05.
Artigo em Inglês | MEDLINE | ID: mdl-21961600

RESUMO

The extracellular matrix contains components with remarkable mechanical properties, including fibronectin (Fn) fibers with extensibilities of >700% strain. We utilized what we consider a novel technique to quantify the extent of molecular unfolding that contributes to Fn fiber extension, and we compared this behavior with stochastic models of Fn fibers with different molecular arrangements. In vitro unfolding as a function of strain was measured by fluorescently labeling cysteines in modules FnIII7 and III15 in artificial Fn fibers. A calibration technique we also consider novel made it possible to demonstrate that 44% of cysteines in these modules were exposed in Fn fibers strained to 421% extension, up from 8% exposure without strain. In silico unfolding was measured by applying a constant strain rate to a fiber represented by a network of wormlike chain springs, each representing an individual Fn molecule. Unfolding rates were calculated with a tension-dependent stochastic model applied to FnIII modules in each molecule. A comparison of these approaches revealed that only a molecular arrangement permitting unequal mechanical loading of Fn molecules recapitulates in vitro unfolding. These data have implications for Fn-dependent mechanotransduction and give insight into how the molecular architecture of natural materials permits such remarkable extensibility.


Assuntos
Fibronectinas/química , Desdobramento de Proteína , Biologia Computacional , Cisteína , Humanos , Método de Monte Carlo , Espectrometria de Fluorescência
10.
Biophys J ; 101(8): 1978-86, 2011 Oct 19.
Artigo em Inglês | MEDLINE | ID: mdl-22004752

RESUMO

As more and more recent investigations point out, force plays an important role in cellular regulation mechanisms. Biological responses to mechanical stress are often based on force-induced conformational changes of single molecules. The force sensor, titin kinase, is involved in a signaling complex that regulates protein turnover and transcriptional adaptation in striated muscle. The structural architecture of such a force sensor determines its response to force and must assure both activity and mechanical integrity, which are prerequisites for its function. Here, we use single-molecule force-clamp spectroscopy to show that titin kinase is organized in such a way that the regulatory domains have to unfold before secondary structure elements that determine the overall fold and catalytic function. The stepwise unfolding over many barriers with a topologically determined sequence assures that the protein can react to force by conformational changes while maintaining its structural integrity.


Assuntos
Fenômenos Mecânicos , Proteínas Musculares/química , Proteínas Musculares/metabolismo , Proteínas Quinases/química , Proteínas Quinases/metabolismo , Biocatálise , Fenômenos Biomecânicos , Conectina , Citoesqueleto/metabolismo , Fibronectinas/química , Humanos , Cadeias de Markov , Microscopia de Força Atômica , Modelos Moleculares , Estrutura Terciária de Proteína , Desdobramento de Proteína
11.
J Biol Chem ; 286(44): 38311-38320, 2011 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-21840989

RESUMO

Bacterial fibronectin-binding proteins (FnBPs) contain a large intrinsically disordered region (IDR) that mediates adhesion of bacteria to host tissues, and invasion of host cells, through binding to fibronectin (Fn). These FnBP IDRs consist of Fn-binding repeats (FnBRs) that form a highly extended tandem ß-zipper interaction on binding to the N-terminal domain of Fn. Several FnBR residues are highly conserved across bacterial species, and here we investigate their contribution to the interaction. Mutation of these residues to alanine in SfbI-5 (a disordered FnBR from the human pathogen Streptococcus pyogenes) reduced binding, but for each residue the change in free energy of binding was <2 kcal/mol. The structure of an SfbI-5 peptide in complex with the second and third F1 modules from Fn confirms that the conserved FnBR residues play equivalent functional roles across bacterial species. Thus, in SfbI-5, the binding energy for the tandem ß-zipper interaction with Fn is distributed across the interface rather than concentrated in a small number of "hot spot" residues that are frequently observed in the interactions of folded proteins. We propose that this might be a common feature of the interactions of IDRs and is likely to pose a challenge for the development of small molecule inhibitors of FnBP-mediated adhesion to and invasion of host cells.


Assuntos
Adesinas Bacterianas/química , Fibronectinas/química , Streptococcus pyogenes/metabolismo , Adesinas Bacterianas/metabolismo , Calorimetria , Cristalografia por Raios X/métodos , Humanos , Cinética , Espectroscopia de Ressonância Magnética/métodos , Cadeias de Markov , Conformação Molecular , Mutagênese Sítio-Dirigida , Mutação , Ligação Proteica , Conformação Proteica , Ressonância de Plasmônio de Superfície , Termodinâmica
12.
Phys Chem Chem Phys ; 13(14): 6597-609, 2011 Apr 14.
Artigo em Inglês | MEDLINE | ID: mdl-21380432

RESUMO

Motivated by experimentally-observed biocompatibility enhancement of nanoengineered cubic zirconia (ZrO(2)) coatings to mesenchymal stromal cells, we have carried out computational analysis of the initial immobilization of one known structural fragment of the adhesive protein (fibronectin) on the corresponding surface. We constructed an atomistic model of the ZrO(2) nano-hillock of 3-fold symmetry based on Atom Force Microscopy and Transmission Electron Microscopy images. First principle quantum mechanical calculations show a substantial variation of electrostatic potential at the hillock due to the presence of surface features such as edges and vertexes. Using an implemented Monte Carlo simulated annealing method, we found the orientation of the immobilized protein on the ZrO(2) surface and the contribution of the amino acid residues from the protein sequence to the adsorption energy. Accounting for the variation of the dielectric permittivity at the protein-implant interface, we used a model distance-dependent dielectric function to describe the inter-atom electrostatic interactions in the adsorption potential. We found that the initial immobilization of the rigid protein fragment on the nanostructured pyramidal ZrO(2) surface is achieved with a magnitude of adsorption energy larger than that of the protein on the smooth (atomically flat) surface. The strong attractive electrostatic interactions are a major contributing factor in the enhanced adsorption at the nanostructured surface. In the case of adsorption on the flat, uncharged surface this factor is negligible. We show that the best electrostatic and steric fit of the protein to the inorganic surface corresponds to a minimum of the adsorption energy determined by the non-covalent interactions.


Assuntos
Engenharia , Proteínas Imobilizadas/química , Nanoestruturas/química , Zircônio/química , Adsorção , Elétrons , Fibronectinas/química , Humanos , Modelos Moleculares , Método de Monte Carlo , Fragmentos de Peptídeos/química , Estrutura Terciária de Proteína , Eletricidade Estática , Propriedades de Superfície
13.
J Biotechnol ; 151(2): 186-93, 2011 Jan 20.
Artigo em Inglês | MEDLINE | ID: mdl-21115074

RESUMO

We have designed, built and tested a three-dimensional (3-D) cell culture system on modified microplates for high-throughput, real-time, proliferation and cytotoxicity assays. In this 3-D culture system, cells expressing the enhanced green fluorescent protein (EGFP) were cultured in nonwoven polyethylene terephthalate (PET) fibrous scaffolds. Compared to 2-D cultures in conventional microplates, 3-D cultures gave more than 10-fold higher fluorescence signals with significantly increased signal-to-noise ratio (SNR), thus extending the application of conventional fluorescence microplate readers for online monitoring of culture fluorescence. The 3-D system was successfully used to demonstrate the effects of fetal bovine serum, fibronectin coating of PET fibers, and cytotoxicity of dexamethasone on recombinant murine embryonic stem D3 cells. The dosage effects of 5-fluorouracil and gemcitabine on high-density colon cancer HT-29 cells were also tested. These studies demonstrated that the 3-D culture microplate system with EGFP expressing cells can be used as a high-throughput system in drug discovery and bioprocess development.


Assuntos
Avaliação Pré-Clínica de Medicamentos/métodos , Imageamento Tridimensional/métodos , Animais , Biotecnologia/métodos , Linhagem Celular Tumoral , Proliferação de Células , Desenho de Fármacos , Indústria Farmacêutica , Células-Tronco Embrionárias/citologia , Fibronectinas/química , Proteínas de Fluorescência Verde/química , Humanos , Processamento de Imagem Assistida por Computador , Cinética , Camundongos
14.
J Periodontal Res ; 45(2): 292-5, 2010 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19909400

RESUMO

BACKGROUND AND OBJECTIVE: Fibronectin (FN) is an important cell adhesion molecule that is used widely to characterize cell behavior. Preparations of FN purified from human plasma by gelatin-Sepharose affinity chromatography typically also contain gelatin-binding gelatinases that may cleave FN, reduce its stability and alter its biological activities. Available methods for separating gelatinases from FN are resource demanding. Therefore, our objective was to devise a time- and cost-efficient protocol for purification of gelatinase-free FN. MATERIAL AND METHODS: Experiments tested the elution profiles for FN and gelatinases from gelatin-Sepharose using a concentration range (1-7%) of dimethyl sulfoxide (DMSO) and 4 m urea as eluants. Subsequently, we explored the sequential application of those eluants for differential elution of gelatinases and FN using a single affinity column. Finally, experiments characterized the stability of purified FN with or without contaminating gelatinases, as well as the effects of FN degradation on cell attachment and migration. RESULTS: Assay optimization demonstrated that pre-elution with 3% DMSO efficiently eliminated gelatinases but not FN from gelatin-Sepharose, whereas subsequent elution with 4 m urea released FN. Sequential elutions with DMSO and urea produced gelatinase-free FN, which was more stable than FN eluted by urea only. Fibronectin degradation did not affect human gingival fibroblast attachment, but increased cell migration significantly. CONCLUSION: The present experiments devised a time- and cost-efficient protocol for eliminating gelatinases during purification of human plasma FN. Gelatinase-free FN preparations had greater stability, which may be essential for experiments because FN fragments have altered biological activities compared with intact FN.


Assuntos
Fibronectinas/isolamento & purificação , Gelatinases/isolamento & purificação , Fenômenos Bioquímicos , Adesão Celular/efeitos dos fármacos , Movimento Celular/efeitos dos fármacos , Cromatografia em Agarose , Cromatografia em Gel , Análise Custo-Benefício , Dimetil Sulfóxido/química , Contaminação de Medicamentos/prevenção & controle , Estabilidade de Medicamentos , Eletroforese em Gel de Poliacrilamida , Fibroblastos/efeitos dos fármacos , Fibronectinas/sangue , Fibronectinas/química , Fibronectinas/farmacologia , Gelatinases/sangue , Gelatinases/química , Gengiva/citologia , Gengiva/efeitos dos fármacos , Humanos , Metaloproteinase 2 da Matriz/química , Metaloproteinase 9 da Matriz/química , Fatores de Tempo , Ureia/química
15.
Biophys J ; 96(2): 429-41, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19167294

RESUMO

We investigate the mechanical unfolding of the tenth type III domain from fibronectin (FnIII(10)) both at constant force and at constant pulling velocity, by all-atom Monte Carlo simulations. We observe both apparent two-state unfolding and several unfolding pathways involving one of three major, mutually exclusive intermediate states. All three major intermediates lack two of seven native beta-strands, and share a quite similar extension. The unfolding behavior is found to depend strongly on the pulling conditions. In particular, we observe large variations in the relative frequencies of occurrence for the intermediates. At low constant force or low constant velocity, all three major intermediates occur with a significant frequency. At high constant force or high constant velocity, one of them, with the N- and C-terminal beta-strands detached, dominates over the other two. Using the extended Jarzynski equality, we also estimate the equilibrium free-energy landscape, calculated as a function of chain extension. The application of a constant pulling force leads to a free-energy profile with three major local minima. Two of these correspond to the native and fully unfolded states, respectively, whereas the third one can be associated with the major unfolding intermediates.


Assuntos
Fibronectinas/química , Modelos Moleculares , Simulação por Computador , Método de Monte Carlo , Conformação Proteica , Dobramento de Proteína , Estrutura Terciária de Proteína , Termodinâmica
16.
Langmuir ; 24(4): 1262-70, 2008 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-18179265

RESUMO

With a long-term objective toward a quantitative understanding of cell adhesion, we consider an idealized theoretical model of a cluster of molecular bonds between two dissimilar elastic media subjected to an applied tensile load. In this model, the distribution of interfacial traction is assumed to obey classical elastic equations whereas the rupture and rebinding of individual molecular bonds are governed by stochastic equations. Monte Carlo simulations that combine the elastic and stochastic equations are conducted to investigate the lifetime of the bond cluster as a function of the applied load. We show that the interfacial traction is generally nonuniform and for a given adhesion size the average cluster lifetime asymptotically approaches infinity as the applied load is reduced to below a critical value, defined as the strength of the cluster. The effects of elastic moduli, adhesion size, and rebinding rate on the cluster lifetime and strength are studied under strongly nonuniform distributions of interfacial traction. Although overly simplified in a number of aspects, our model seems to give predictions that are consistent with relevant experimental observations on focal adhesion dynamics.


Assuntos
Modelos Biológicos , Método de Monte Carlo , Adesão Celular/fisiologia , Elasticidade , Fibronectinas/química , Integrinas/química , Ligantes , Propriedades de Superfície
17.
Biophys J ; 88(5): L37-9, 2005 May.
Artigo em Inglês | MEDLINE | ID: mdl-15792967

RESUMO

In the last decade atomic force microscopy has been used to measure the mechanical stability of single proteins. These force spectroscopy experiments have shown that many water-soluble and membrane proteins unfold via one or more intermediates. Recently, Li and co-workers found a linear correlation between the unfolding force of the native state and the intermediate in fibronectin, which they suggested indicated the presence of a molecular memory or multiple unfolding pathways (1). Here, we apply two independent methods in combination with Monte Carlo simulations to analyze the unfolding of alpha-helices E and D of bacteriorhodopsin (BR). We show that correlation analysis of unfolding forces is very sensitive to errors in force calibration of the instrument. In contrast, a comparison of relative forces provides a robust measure for the stability of unfolding intermediates. The proposed approach detects three energetically different states of alpha-helices E and D in trimeric BR. These states are not observed for monomeric BR and indicate that substantial information is hidden in forced unfolding experiments of single proteins.


Assuntos
Biofísica/métodos , Microscopia de Força Atômica/métodos , Bacteriorodopsinas/química , Calibragem , Fibronectinas/química , Substâncias Macromoleculares/química , Modelos Moleculares , Método de Monte Carlo , Distribuição Normal , Conformação Proteica , Desnaturação Proteica , Dobramento de Proteína , Estrutura Secundária de Proteína , Proteínas/química , Água/química
18.
J Biomater Sci Polym Ed ; 14(9): 973-88, 2003.
Artigo em Inglês | MEDLINE | ID: mdl-14661874

RESUMO

Surfaces of polytetrafluoroethylene (PTFE) were exposed to buffered aqueous solutions containing radio-labeled human fibronectin ([125I]Fn), Fn/bovine serum albumin (BSA) binary mixtures of various ratios or whole human plasma dilutions for 1 h. Total adsorbed Fn and albumin adsorption following rinsing was quantified on this surface. 125I-labeled monoclonal antibodies against either the tenth type-III Fn repeat unit (containing the cell-binding RGDS integrin recognition motif) or the Fn amino-terminal domain were used to probe the accessibility of each of these respective Fn regions post-adsorption. Human umbilical vein endothelial cells (HUVECs) were cultured on PTFE surfaces pre-exposed to each of these protein adsorption conditions and compared to identical conditions on tissue culture polystyrene (TCPS). Fn adsorption to PTFE is dependent upon the concentration of albumin co-adsorbing from solution: albumin out-competes Fn for PTFE surface sites even at non-physiological Fn/HSA ratios 10-100-fold biased in Fn. Antibodies against Fn do not readily recognize Fn adsorbed on PTFE as the HSA co-adsorption concentration in either binary mixtures or in plasma increases, indicating albumin masking of adsorbed Fn. At Fn/HSA ratios rich in Fn (1:1, 1:100), albumin co-adsorption actually improves anti-Fn antibody recognition of adsorbed Fn. HUVEC attachment efficiency to PTFE after protein adsorption correlates with amounts of Fn adsorbed and levels of anti-Fn antibody recognition of Fn on PTFE, linking cell attachment to integrin recognition of both adsorbed Fn density and Fn adsorbed conformation on PTFE surfaces.


Assuntos
Proteínas Sanguíneas , Fibronectinas/sangue , Fibronectinas/química , Politetrafluoretileno/química , Adsorção , Animais , Bovinos , Adesão Celular , Células Cultivadas , Células Endoteliais/citologia , Fibronectinas/imunologia , Humanos , Conformação Proteica
20.
J Mol Biol ; 286(2): 579-92, 1999 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-9973572

RESUMO

The energy landscape for the denatured state of a protein provides a key to understanding early folding events. We have attempted to map this landscape for the third fibronectin type III domain from human tenascin (TNfn3), a compact 9.5 kDa beta-sandwich protein, through measurement of 15N backbone dynamics on the milli- to picosecond timescale and a number of structural parameters. TNfn3 was fully denatured with 5 M urea and buffered at pH 4.9 with 50 mM acetate. Under these conditions, multinuclear NMR experiments were used to complete a full spectral assignment. Secondary chemical shifts, 3JHNHalpha coupling constants, amide proton temperature coefficients, interresidue nuclear Overhauser enhancement (NOE) intensities, R1 and R2 15N relaxation rates, and {1H-15N} steady-state NOE enhancements were analyzed at 11.74 T (500 MHz) and 303 K. Several parameters were also measured at 278 K. Off-resonance T1rho experiments at 14.1 T (600 MHz) and 278 K reveal a lack of motion on the milli- to microsecond timescale, indicating that no element of residual structure in the denatured domain is persistant. Although increased sample viscosity dampens overall mobility at the lower temperature, the dynamic propensities of individual residues are temperature independent. Reduced mobility correlates to regions of extreme hydrophobicity or polarity. In these same regions, several other measures for random coil behavior are perturbed. Evidence for two nascent turn-like structures is reported. Otherwise, residual structure correlates more strongly to characteristics of individual residues than to structural elements of the native state.


Assuntos
Fibronectinas/química , Espectroscopia de Ressonância Magnética , Estrutura Secundária de Proteína , Sequência de Aminoácidos , Fibronectinas/efeitos dos fármacos , Cinética , Modelos Moleculares , Dados de Sequência Molecular , Método de Monte Carlo , Movimento (Física) , Desnaturação Proteica , Dobramento de Proteína , Estrutura Terciária de Proteína , Ureia/farmacologia
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