RESUMO
Stem cell therapy using islet-like insulin-producing cells derived from human pluripotent stem cells has the potential to allow patients with type 1 diabetes to withdraw from insulin therapy. However, several issues exist regarding the use of stem cell therapy to treat type 1 diabetes. In this review, we will focus on the following topics: (1) autoimmune responses during the autologous transplantation of stem cell-derived islet cells, (2) a comparison of stem cell therapy with insulin injection therapy, (3) the impact of the islet microenvironment on stem cell-derived islet cells, and (4) the cost-effectiveness of stem cell-derived islet cell transplantation. Based on these various viewpoints, we will discuss what is required to perform stem cell therapy for patients with type 1 diabetes.
Assuntos
Diabetes Mellitus Tipo 1/terapia , Transplante de Células-Tronco , Animais , Autoimunidade , Microambiente Celular , Análise Custo-Benefício , Diabetes Mellitus Tipo 1/economia , Diabetes Mellitus Tipo 1/imunologia , Diabetes Mellitus Tipo 1/patologia , Estudos de Viabilidade , Humanos , Transplante de Células-Tronco/economiaRESUMO
OBJECTIVE: Iatrogenic laryngotracheal stenosis (iLTS) is characterized by fibroinflammatory narrowing of the upper airway and is most commonly caused by intubation injury. Evidence suggests a key role for CD4 T cells in its pathogenesis. The objective of this study is to validate emerging multiplex immunofluorescence (mIF) technology for use in the larynx and trachea while quantitatively characterizing the immune cell infiltrate in iLTS. In addition to analyzing previously unstudied immune cell subsets, this study aims to validate previously observed elevations in the immune checkpoint PD-1 and its ligand PD-L1 while exploring their spatial and cellular distributions in the iLTS microenvironment. STUDY DESIGN: Controlled ex vivo cohort study. SETTING: Tertiary care center. METHODS: mIF staining was performed with formalin-fixed, paraffin-embedded slides from 10 patients with iLTS who underwent cricotracheal resection and 10 control specimens derived from rapid autopsy for CD4, CD8, CD20, FoxP3, PD-1, PD-L1, and cytokeratin. RESULTS: There was greater infiltration of CD4+ T cells, CD8+ T cells, CD20+ B cells, FoxP3+CD4+ Tregs, and FoxP3+CD8+ early effector T cells in the submucosa of iLTS specimens as compared with controls (P < .05 for all). PD-1 was primarily expressed on T cells and PD-L1 predominantly on CD4+ cells and "other" cells. CONCLUSION: This study leverages the power of mIF to quantify the iLTS immune infiltrate in greater detail. It confirms the highly inflammatory nature of iLTS, with CD4+ cells dominating the immune cell infiltrate; it further characterizes the cellular and spatial distribution of PD-1 and PD-L1; and it identifies novel immunologic targets in iLTS.
Assuntos
Laringoestenose/imunologia , Laringoestenose/patologia , Estenose Traqueal/imunologia , Estenose Traqueal/patologia , Microambiente Celular , Estudos de Coortes , Estudos de Avaliação como Assunto , Feminino , Imunofluorescência , Humanos , Doença Iatrogênica , Laringoestenose/complicações , Masculino , Pessoa de Meia-Idade , Estenose Traqueal/complicaçõesRESUMO
Acute myeloid leukemia (AML) is a genetically heterogeneous disease that is characterized by abnormal clonal proliferation of myeloid progenitor cells found predominantly within the bone marrow (BM) and blood. Recent studies suggest that genetic and phenotypic alterations in the BM microenvironment support leukemogenesis and allow leukemic cells to survive and evade chemotherapy-induced death. However, despite substantial evidence indicating the role of tumor-host interactions in AML pathogenesis, little is known about the complex microenvironment of the BM. To address this, we performed novel proteomic profiling of the noncellular compartment of the BM microenvironment in patients with AML (n = 10) and age- and sex-matched healthy control subjects (n = 10) using an aptamer-based, highly multiplexed, affinity proteomics platform (SOMAscan). We show that proteomic assessment of blood or RNA-sequencing of BM are suboptimal alternate screening strategies to determine the true proteomic composition of the extracellular soluble compartment of AML patient BM. Proteomic analysis revealed that 168 proteins significantly differed in abundance, with 91 upregulated and 77 downregulated in leukemic BM. A highly connected signaling network of cytokines and chemokines, including IL-8, was found to be the most prominent proteomic signature associated with AML in the BM microenvironment. We report the first description of significantly elevated levels of the myelosuppressive chemokine CCL23 (myeloid progenitor inhibitory factor-1) in both AML and myelodysplastic syndrome patients and perform functional experiments supportive of a role in the suppression of normal hematopoiesis. This unique paired RNA-sequencing and proteomics data set provides innovative mechanistic insights into AML and healthy aging and should serve as a useful public resource.
Assuntos
Medula Óssea/patologia , Leucemia Mieloide Aguda/patologia , Proteômica/métodos , Estudos de Casos e Controles , Microambiente Celular , Quimiocinas/análise , Quimiocinas CC/metabolismo , Citocinas/análise , Regulação Leucêmica da Expressão Gênica , Humanos , Interleucina-8/metabolismo , Proteínas de Neoplasias/análiseRESUMO
There is an increasing interest in studying the crosstalk between tumor-associated adipose tissue and tumor progression. In proximity to the primary site of kidney tumors, perinephric adipose tissue has direct contact with cancer cells when kidney cancer becomes invasive. To mimic the perinephric adipose tissue microenvironment, we applied the liquid overlay-based technique, which cost-effectively generated functional adipocyte spheroids using mesenchymal stem cells isolated from human perinephric adipose tissue. Thereafter, we co-cultured adipocyte spheroids with unpolarized macrophages and discovered an M2 phenotype skew in macrophages. Moreover, we discovered that, in the presence of adipocyte spheroids, M2 macrophages exhibited stronger invasive capacity than M1 macrophages. We further showed that the perinephric adipose tissue sampled from metastatic kidney cancer exhibited high expression of M2 macrophages. In conclusion, the liquid overlay-based technique can generate a novel three-dimensional platform enabling investigation of the interactions of adipocytes and other types of cells in a tumor microenvironment.
Assuntos
Adipócitos/citologia , Adipogenia , Tecido Adiposo/citologia , Técnicas de Cultura de Células/instrumentação , Células-Tronco Mesenquimais/citologia , Adipócitos/patologia , Tecido Adiposo/patologia , Técnicas de Cultura de Células/economia , Células Cultivadas , Microambiente Celular , Técnicas de Cocultura/economia , Técnicas de Cocultura/instrumentação , Humanos , Neoplasias Renais/patologia , Macrófagos/citologia , Macrófagos/patologia , Células-Tronco Mesenquimais/patologia , Esferoides Celulares/citologia , Esferoides Celulares/patologia , Células Tumorais CultivadasRESUMO
BACKGROUND: Fertility preservation (FP) protocols in case of breast cancer (BC) include mature oocyte cryopreservation following letrozole associated controlled ovarian hyperstimulation (Let-COH). To date, the impact of Let-COH on the follicular microenvironment has been poorly investigated, although a high androgen/estrogen ratio was previously associated with low oocyte quality. METHODS: In this prospective study, follicular fluid (FF) steroid levels (estradiol, testosterone, progesterone) and cumulus cell (CC) gene expression related to oocyte quality (HAS2, PTGS2, GREM1) were compared between 23 BC patients undergoing Let-COH for FP and 24 infertile patients undergoing conventional COH without letrozole. All patients underwent an antagonist COH cycle, and ovulation was triggered with hCG or GnRHa in both groups. RESULTS: FF estradiol levels were significantly lower while testosterone levels were significantly higher in the study group compared to controls irrespective of the trigger method. However, estradiol levels increased significantly with GnRHa triggering compared to hCG in the study group (median = 194.5 (95.4-438) vs 64.4 (43.8-152.4) ng/ml, respectively, p < 0.001), but not in the control group (median = 335.5 (177.5-466.7) vs 354 (179-511) ng/ml, respectively). After hCG trigger, Cumulus cell (CC) gene expression was lower in the study group compared to the control group, and difference was significant for PTGS2. Conversely, CC gene expression of PTGS2 and GREM1 was significantly higher in the study group compared to controls when ovulation was triggered with GnRHa. CONCLUSIONS: Let-COH triggered with hCG may negatively impact oocyte quality. However, ovulation triggering with GnRHa may improve the oocyte microenvironment and cumulus cell genes expression in Let-COH, suggesting a positive impact on oocyte quality in breast cancer patients. TRIAL REGISTRATION: Clinicaltrials.gov - NCT02661932 , registered 25 January 2016, retrospectively registered.
Assuntos
Neoplasias da Mama , Preservação da Fertilidade/métodos , Infertilidade Feminina/terapia , Letrozol/uso terapêutico , Oócitos/efeitos dos fármacos , Indução da Ovulação/métodos , Adolescente , Adulto , Microambiente Celular , Estradiol/metabolismo , Feminino , Líquido Folicular/metabolismo , Marcadores Genéticos , Humanos , Letrozol/efeitos adversos , Oócitos/fisiologia , Progesterona/metabolismo , Testosterona/metabolismoRESUMO
The study of human cardiomyopathies and the development and testing of new therapies has long been limited by the availability of appropriate in vitro model systems. Cardiomyocytes are highly specialized cells whose internal structure and contractile function are sensitive to the local microenvironment and the combination of mechanical and biochemical cues they receive. The complementary technologies of human induced pluripotent stem cell (hiPSC) derived cardiomyocytes (CMs) and microphysiological systems (MPS) allow for precise control of the genetics and microenvironment of human cells in in vitro contexts. These combined systems also enable quantitative measurement of mechanical function and intracellular organization. This review describes relevant factors in the myocardium microenvironment that affect CM structure and mechanical function and demonstrates the application of several engineered microphysiological systems for studying development, disease, and drug discovery.
Assuntos
Engenharia Celular , Células-Tronco Pluripotentes Induzidas/citologia , Miócitos Cardíacos/citologia , Animais , Microambiente Celular , HumanosRESUMO
The vascular wall within adipose tissue is a source of mesenchymal progenitors, referred to as perivascular stem/stromal cells (PSC). PSC are isolated via fluorescence activated cell sorting (FACS), and defined as a bipartite population of pericytes and adventitial progenitor cells (APCs). Those factors that promote the differentiation of PSC into bone or fat cell types are not well understood. Here, we observed high expression of WISP-1 among human PSC in vivo, after purification, and upon transplantation in a bone defect. Next, modulation of WISP-1 expression was performed, using WISP-1 overexpression, WISP-1 protein, or WISP-1 siRNA. Results demonstrated that WISP-1 is expressed in the perivascular niche, and high expression is maintained after purification of PSC, and upon transplantation in a bone microenvironment. In vitro studies demonstrate that WISP-1 has pro-osteogenic/anti-adipocytic effects in human PSC, and that regulation of BMP signaling activity may underlie these effects. In summary, our results demonstrate the importance of the matricellular protein WISP-1 in regulation of the differentiation of human stem cell types within the perivascular niche. WISP-1 signaling upregulation may be of future benefit in cell therapy mediated bone tissue engineering, for the healing of bone defects or other orthopaedic applications.
Assuntos
Osso e Ossos/metabolismo , Osso e Ossos/fisiologia , Proteínas de Sinalização Intercelular CCN/metabolismo , Gorduras/metabolismo , Osteogênese/fisiologia , Proteínas Proto-Oncogênicas/metabolismo , Células-Tronco/metabolismo , Células-Tronco/fisiologia , Tecido Adiposo/metabolismo , Tecido Adiposo/fisiologia , Diferenciação Celular/fisiologia , Separação Celular/métodos , Células Cultivadas , Microambiente Celular/fisiologia , Citometria de Fluxo/métodos , Humanos , Pericitos/metabolismo , Pericitos/fisiologia , Engenharia Tecidual/métodos , Regulação para Cima/fisiologiaRESUMO
The endometrium lines a women's uterus becoming receptive, and allowing embryo implantation to occur, for just a few days during the post-ovulatory mid-secretory phase of each menstrual cycle. We investigated whether concentrations of proposed receptivity biomarkers (VEGF, IL8, FGF2, CSF3 sFlt-1, sGP130 and PlGF) secreted by the endometrium into the uterine cavity and forming the microenvironment for embryo implantation is altered among a population of age-matched women with unexplained (idiopathic) infertility compared to fertile women during the receptive mid-secretory phase (nâ¯=â¯16 fertile, 18 infertile) and the prior pre-receptive early secretory phase (nâ¯=â¯19 fertile, 18 infertile) of their cycle. In the mid-secretory cohort significantly elevated concentrations of five biomarkers; PlGF (pâ¯=â¯0.001), IL8 (pâ¯=â¯0.004), sGP130 (pâ¯=â¯0.009), sFlt-1 (pâ¯=â¯0.021), and CSF3 (pâ¯=â¯0.029) was present in uterine fluid of infertile women during the mid-secretory phase, but only CSF3 was significantly elevated in the pre-receptive early secretory phase (pâ¯=â¯0.006). In vitro studies of glycosylated and non-glycosylated forms of CSF3 at representative fertile (20â¯ng/mL) and infertile (70â¯ng/mL) effects on endometrium and embryo behaviour were performed. Non-glycosylated CSF3 at fertile concentrations significantly (pâ¯<â¯0.001) elevated endometrial epithelial cell proliferation however chronic treatment or elevated (infertile) concentrations of CSF3 in glycosylated form abrogated the positive effects. Both forms of CSF3 increased trophoblast cell invasion (pâ¯<â¯0.001) regardless of concentration. Mouse embryo outgrowth was significantly (pâ¯<â¯0.01) increased at fertile but not at infertile concentrations. The study confirmed potential utility of five biomarkers of endometrial receptivity for future application in the mid-secretory phase while highlighting CSF3 is elevated in the earlier pre-receptive phase. Our data provides evidence that CSF3 acts on both human endometrium and embryo in a manner that is concentration and glycosylation dependent.
Assuntos
Biomarcadores/metabolismo , Endométrio/metabolismo , Útero/metabolismo , Animais , Linhagem Celular , Microambiente Celular/fisiologia , Estudos de Coortes , Implantação do Embrião/fisiologia , Feminino , Fertilidade/fisiologia , Humanos , Infertilidade Feminina/metabolismo , Ciclo Menstrual/metabolismo , Camundongos , Camundongos Endogâmicos C57BLRESUMO
Sex differences in adipose tissue distribution and the metabolic, endocrine, and immune functions of different anatomical fat depots have been described, but they are incompletely documented in the literature. It is becoming increasingly clear that adipose depots serve distinct functions in males and females and have specific physiological roles. However, the mechanisms that regulate the size and function of specific adipose tissues in men and women remain poorly understood. New insights from mouse models have advanced our understanding of depot differences in adipose growth and remodeling via the proliferation and differentiation of adipose progenitors that can expand adipocyte number in the tissue or simply replace dysfunctional older and larger adipocytes. A limited ability of a depot to expand or remodel can lead to excessive adipocyte hypertrophy, which is often correlated with metabolic dysfunction. However, the relationship of adipocyte size and function varies by depot and sex. For example, femoral adipose tissues of premenopausal women appear to have a greater capacity for adipose expansion via hyperplasia and hypertrophy; although larger, these gluteal-femoral adipocytes remain insulin sensitive. The microenvironment of specific depots, including the composition of the extracellular matrix and cellular composition, as well as cell-autonomous genetic differences, influences sex- and depot-dependent metabolic and growth properties. Although there are some species differences, studies of the molecular and physiological determinants of sex differences in adipocyte growth and function in humans and rodents are both needed for understanding sex differences in health and disease.
Assuntos
Adipócitos/metabolismo , Tecido Adiposo/metabolismo , Adiposidade , Adipócitos/patologia , Adipogenia , Tecido Adiposo/fisiopatologia , Adiposidade/genética , Animais , Proliferação de Células , Microambiente Celular , Feminino , Disparidades nos Níveis de Saúde , Humanos , Masculino , Doenças Metabólicas/genética , Doenças Metabólicas/metabolismo , Doenças Metabólicas/patologia , Doenças Metabólicas/fisiopatologia , Modelos Animais , Obesidade/genética , Obesidade/metabolismo , Obesidade/patologia , Obesidade/fisiopatologia , Fatores de Risco , Caracteres Sexuais , Fatores Sexuais , Transdução de SinaisRESUMO
The presence of genital inflammatory responses and a compromised vaginal epithelial barrier have been linked to an increased risk of HIV acquisition. It is important to assure that application of candidate microbicides designed to limit HIV transmission will not cause these adverse events. We previously developed high resolution in vivo imaging methodologies in sheep to assess epithelial integrity following vaginal application of a model microbicide, however characterization of genital inflammation in sheep has not been previously possible. In this study, we significantly advanced the sheep model by developing approaches to detect and quantify inflammatory responses resulting from application of a nonoxynol-9-containing gel known to elicit vaginal irritation. Vaginal application of this model microbicide resulted in foci of disrupted epithelium detectable by confocal endomicroscopy. Leukocytes also infiltrated the treated mucosa and the number and composition of leukocytes obtained by cervicovaginal lavage (CVL) were determined by differential staining and flow cytometry. By 18h post-treatment, a population comprised predominantly of granulocytes and monocytes infiltrated the vagina and persisted through 44h post-treatment. The concentration of proinflammatory cytokines and chemokines in CVL was determined by quantitative ELISA. Concentrations of IL-8 and IL-1ß were consistently significantly increased after microbicide application suggesting these cytokines are useful biomarkers for epithelial injury in the sheep model. Together, the results of these immunological assessments mirror those obtained in previous animal models and human trials with the same compound and greatly extend the utility of the sheep vaginal model in assessing the vaginal barrier and immune microenvironment.
Assuntos
Anti-Infecciosos/uso terapêutico , Epitélio/patologia , Infecções por HIV/prevenção & controle , HIV-1/imunologia , Leucócitos/imunologia , Vagina/patologia , Vaginite/imunologia , Animais , Biomarcadores/metabolismo , Bovinos , Microambiente Celular , Modelos Animais de Doenças , Avaliação Pré-Clínica de Medicamentos , Epitélio/diagnóstico por imagem , Feminino , Humanos , Imunofenotipagem , Mediadores da Inflamação/metabolismo , Interleucina-1beta/metabolismo , Interleucina-8/metabolismo , Nonoxinol , Vagina/diagnóstico por imagem , Vaginite/induzido quimicamente , Vaginite/tratamento farmacológicoRESUMO
Millions of platelets, specialized cells that participate in haemostatic and inflammatory functions, are transfused each year worldwide, but their supply is limited. Platelets are produced by megakaryocytes by extending proplatelets, directly into the bloodstream. Bone marrow structure and extracellular matrix composition together with soluble factors (e.g. Thrombopoietin) are key regulators of megakaryopoiesis by supporting cell differentiation and platelet release. Despite this knowledge, the scarcity of clinical cures for life threatening platelet diseases is in a large part due to limited insight into the mechanisms that control the developmental process of megakaryocytes and the mechanisms that govern the production of platelets within the bone marrow. To overcome these limitations, functional human tissue models have been developed and studied to extrapolate ex vivo outcomes for new insight on bone marrow functions in vivo. There are many challenges that these models must overcome, from faithfully mimicking the physiological composition and functions of bone marrow, to the collection of the platelets generated and validation of their viability and function for human use. The overall goal is to identify innovative instruments to study mechanisms of platelet release, diseases related to platelet production and new therapeutic targets starting from human progenitor cells.
Assuntos
Plaquetas/citologia , Animais , Benzoatos/uso terapêutico , Reatores Biológicos , Medula Óssea , Técnicas de Cultura de Células , Células Cultivadas , Microambiente Celular , Necessidades e Demandas de Serviços de Saúde , Humanos , Hidrazinas/uso terapêutico , Megacariócitos/citologia , Modelos Animais , Transfusão de Plaquetas , Pirazóis/uso terapêutico , Trombocitopenia/terapia , TrombopoeseRESUMO
Since osteoblastic activities are believed to be coupled with osteoclasts, we have attempted to histologically verify which of the distinct cellular circumstances, the presence of osteoclasts themselves or bone resorption by osteoclasts, is essential for coupled osteoblastic activity, by examining c-fos-/- or c-src-/- mice. Osteopetrotic c-fos deficient (c-fos-/-) mice have no osteoclasts, while c-src deficient (c-src-/-) mice, another osteopetrotic model, develop dysfunctional osteoclasts due to a lack of ruffled borders. c-fos-/- mice possessed no tartrate-resistant acid phosphatase (TRAPase)-reactive osteoclasts, and showed very weak tissue nonspecific alkaline phosphatase (TNALPase)-reactive mature osteoblasts. In contrast, c-src-/- mice had many TNALPase-positive osteoblasts and TRAPase-reactive osteoclasts. Interestingly, the parallel layers of TRAPase-reactive/osteopontin-positive cement lines were observed in the superficial region of c-src-/- bone matrix. This indicates the possibility that in c-src-/- mice, osteoblasts were activated to deposit new bone matrices on the surfaces that osteoclasts previously passed along, even without bone resorption. Transmission electron microscopy demonstrated cell-to-cell contacts between mature osteoblasts and neighboring ruffled border-less osteoclasts, and osteoid including many mineralized nodules in c-src-/- mice. Thus, it seems likely that osteoblastic activities would be maintained in the presence of osteoclasts, even if they are dysfunctional.
Assuntos
Osteoblastos/fisiologia , Osteoclastos/metabolismo , Quinases da Família src/genética , Animais , Biomarcadores , Reabsorção Óssea/genética , Reabsorção Óssea/metabolismo , Proteína Tirosina Quinase CSK , Calcificação Fisiológica , Comunicação Celular , Microambiente Celular , Imuno-Histoquímica , Camundongos , Camundongos Knockout , Osteoblastos/ultraestrutura , Osteoclastos/ultraestrutura , Proteínas Proto-Oncogênicas c-fos/genética , Proteínas Proto-Oncogênicas c-fos/metabolismo , Quinases da Família src/deficiênciaRESUMO
A Leucemia Mieloide Aguda (LMA) é uma neoplasia hematológica heterogênea caracterizada pela proliferação e acúmulo dos precursores mielóides na medula óssea (MO), podendo ser classificada em 8 subtipos a partir das características de leucócitos e da fase interrompida na diferenciação celular. Apesar dos diversos estudos na área, os eventos relacionados com o início da doença assim como sua progressão ainda não foram elucidados. O nicho hematopoético apresenta um papel importante na manutenção e diferenciação das Células Tronco Hematopoéticas normais (CTH) e acredita-se que alterações nesse meio podem estar influenciando no surgimento da uma Célula Tronco Leucêmica (CTL). O microambiente medular é formado por um grupo heterogênio de células não hematopoéticas, dentre elas as células estromais da medula (MSC). Por isso, o objetivo deste trabalho é avaliar se o processo de transformação leucêmica da CTH pode ser influenciado pela sinalização realizada pela MSC em pacientes com LMA. Para isso, amostras de MO de pacientes com LMA ao diagnóstico e de doadores saudáveis (DS) foram colocadas em cultura para isolamento e cultivo das MSC. Realizamos uma caracterização das culturas de acordo com a SITC e todas apresentaram características de MSC tanto na morfologia como na expressão de marcadores de superfície celular. Nos ensaios de diferenciação adipogênica e osteogênica in vitro todas as MSCs apresentavam capacidade de se diferenciar, entretanto, o potencial de diferenciação osteogênica foi menor em pacientes com LMA. Comparamos também o perfil de proliferação e ciclo celular e não foi observada diferenças estatísticas entre as culturas de MSCs. Para verificarmos então se havia diferença de expressão gênica entre as culturas, realizamos ensaios de Chiparray. Para a realização desse ensaio foram utilizadas 7 amostras de pacientes e comparadas com dois pools de DS. Cinquenta e cino genes foram encontrados diferencialmente expressos e escolhemos 6 genes para serem confirmados por RT-qPCR em 19 amostras de pacientes e 13 amostras de doadores (Ccl2 e Spond2 aumentados e Mmp16, Bmp4, Cldn1 e Opn diminuídos em MSCs de pacientes com LMA). Com esses resultados podemos sugerir que existe uma assinatura molecular comum a todas as MSCs de LMA independente do subtipo quando comparado com DS. Realizamos também análises in silico para avaliar as vias de sinalização e as interações que os genes diferencialmente expressos encontrados apresentavam. Nessas análises os genes encontrados estão envolvidos principalmente com as vias de diferenciação de osteoclastos e sinalização de Wnt. Também avaliamos os níveis das proteínas CCL2, BMP4 e OPN no plasma de pacientes com LMA e DS Nossos resultados confirmam o aumento de CCL2 no plasma de pacientes com LMA assim como a redução de BMP4. No entanto, os níveis de OPN não foram alterados. Esses genes têm sido descritos como importantes componentes produzidos pelo microambiente medular xvi queregulam tanto o número de CTH quanto a função. Com esses resultados, podemos sugerir que a MSC de pacientes com LMA apresentam alterações na sinalização no contexto da doença, e alterações na expressão dos genes Ccl2 e Bmp4 podem estar relacionados com o processo de transformação leucêmica.
Assuntos
Leucemia Mieloide Aguda/genética , Células-Tronco Mesenquimais , Expressão Gênica , Microambiente CelularRESUMO
Structure comparison is widely used to quantify protein relationships. Although there are several approaches to calculate structural similarity, specifying significance thresholds for similarity metrics is difficult due to the inherent likeness of common secondary structure elements. In this study, metal co-factor location is used to assess the biological relevance of structural alignments. The distance between the centroids of bound co-factors adds a chemical and function-relevant constraint to the structural superimposition of two proteins. This additional dimension can be used to define cut-off values for discriminating valid and spurious alignments in large alignment sets. The hypothesis underlying our approach is that metal coordination sites constrain structural evolution, thus revealing functional relationships between distantly related proteins. A comparison of three related nitrogenases shows the sequence and fold constraints imposed on the protein structures up to 18 Å away from the centers of their bound metal clusters.