Molecular evolution, diversification, and expression assessment of MADS gene family in Setaria italica, Setaria viridis, and Panicum virgatum.

KEY MESSAGE: This paper sheds light on the evolution and expression patterns of MADS genes in Setaria and Panicum virgatum. SiMADS51 and SiMADS64 maybe involved in the ABA-dependent pathway of drought response. The MADS gene family is a key regulatory factor family that controls growth, reproduction, and response to abiotic stress in plants. However, the molecular evolution of this family is rarely reported. Here, a total of 265 MADS genes were identified in Setaria italica (foxtail millet), Setaria viridis (green millet), and Panicum virgatum (switchgrass) and analyzed by bioinformatics, including physicochemical characteristics, subcellular localization, chromosomal position and duplicate, motif distribution, genetic structure, genetic evolvement, and expression patterns. Phylogenetic analysis was used to categorize these genes into M and MIKC types. The distribution of motifs and gene structure were similar for the corresponding types. According to a collinearity study, the MADS genes have been mostly conserved during evolution. The principal cause of their expansion is segmental duplication. However, the MADS gene family tends to shrink in foxtail millet, green millet, and switchgrass. The MADS genes were subjected to purifying selection, but several positive selection sites were also identified in three species. And most of the promoters of MADS genes contain cis-elements related to stress and hormonal response. RNA-seq and quantitative Real-time PCR (qRT-PCR) analysis also were examined. SiMADS genes expression levels are considerably changed in reaction to various treatments, following qRT-PCR analysis. This sheds fresh light on the evolution and expansion of the MADS family in foxtail millet, green millet, and switchgrass, and lays the foundation for further research on their functions.

The genetic basis of the root economics spectrum in a perennial grass.

Construction economics of plant roots exhibit predictable relationships with root growth, death, and nutrient uptake strategies. Plant taxa with inexpensively constructed roots tend to more precisely explore nutrient hotspots than do those with costly constructed roots but at the price of more frequent tissue turnover. This trade-off underlies an acquisitive to conservative continuum in resource investment, described as the "root economics spectrum (RES)." Yet the adaptive role and genetic basis of RES remain largely unclear. Different ecotypes of switchgrass (Panicum virgatum) display root features exemplifying the RES, with costly constructed roots in southern lowland and inexpensively constructed roots in northern upland ecotypes. We used an outbred genetic mapping population derived from lowland and upland switchgrass ecotypes to examine the genetic architecture of the RES. We found that absorptive roots (distal first and second orders) were often "deciduous" in winter. The percentage of overwintering absorptive roots was decreased by northern upland alleles compared with southern lowland alleles, suggesting a locally-adapted conservative strategy in warmer and acquisitive strategy in colder regions. Relative turnover of absorptive roots was genetically negatively correlated with their biomass investment per unit root length, suggesting that the key trade-off in framing RES is genetically facilitated. We also detected strong genetic correlations among root morphology, root productivity, and shoot size. Overall, our results reveal the genetic architecture of multiple traits that likely impacts the evolution of RES and plant aboveground-belowground organization. In practice, we provide genetic evidence that increasing switchgrass yield for bioenergy does not directly conflict with enhancing its root-derived carbon sequestration.

Assessment of quality of minor millets available in the south Indian market & glycaemic index of cooked unpolished little & foxtail millet.

BACKGROUND & OBJECTIVES: : Millets are widely marketed as healthier alternatives to white rice (WR). This study was conducted with two aims: firstly, to look at the nature and quality of minor millets available in the Chennai market and secondly, to estimate the glycaemic index (GI) of unpolished forms of the two most widely available minor millets, i.e. little (LM) and foxtail millet (FXM). METHODS: : A market survey was conducted of 100 food stores in four zones of Chennai, south India. Morphological features of market millet samples were compared with that of unpolished millets under stereo-zoom microscope, and the claims declared on the pack were evaluated. A consumer perception survey was conducted among 20 minor millet-consuming female homemakers. Finally, the GI of unpolished LM and FXM was evaluated using a validated protocol in 12 healthy volunteers. RESULTS: : Forty eight brands of minor millets were available, with LM and FXM being the most common. Most of the millet samples were identified as highly polished grains using stereo-zoom microscope. The product labels were misleading and showed no scientific backing for claims mentioned on the label. Most participants (12 of 20) were unaware of the fact that millets can also be polished like rice. Both LM and FXM exhibited high GI (88.6±5.7 and 88.6±8.7, respectively). INTERPRETATION & CONCLUSIONS: The availability and knowledge regarding unpolished millets was low. Both LM and FXM exhibited high GI. Hence, substituting millets for WR might be of limited benefit considering the glycaemic property in the prevention and management of chronic non-communicable diseases such as T2DM.

Ozone phytotoxicity to Panicum maximum and Cenchrus ciliaris at Indo-Gangetic plains: an assessment of antioxidative defense and growth responses.

Two common tropical grassland species, Panicum maximum Jacq. (Guinea grass) and Cenchrus ciliaris (Buffel grass) of Indo-Gangetic plains were assessed for their responses under future level of O3 (ambient +30 ppb) using open top chambers. Plants were assessed for foliar injuries, pigments, growth, biomass accumulation, histochemical localization of reactive oxygen species (ROS), antioxidant defense system and ROS scavenging activities at two stages. Foliar injuries were noticed at an early stage in P. maximum compared to C. ciliaris. Significant reductions were observed in total chlorophyll, growth and total biomass in both species. Significant increases in contents of melondialdehyde and ascorbic acid in P. maximum while total phenolics and thiols in C. ciliaris were found. Histochemical analysis showed more production of superoxide radicals and hydrogen peroxide in leaf tissues of P. maximum compared to C. ciliaris. It can be concluded that higher level of primary antioxidants (total phenolics and thiols) along with superoxide dismutase and ascorbate peroxidase scavenged O3 effectively in C. ciliaris causing less reduction of biomass which is used as a feed for cattles. In P. maximum, more photosynthates were allocated for defense, leading to higher reduction in total biomass compared to C. ciliaris. The leaf area ratio was higher in P. maximum compared to C. ciliaris under elevated O3. The study further suggests higher susceptibility of P. maximum compared to C. ciliaris under future level of O3 exposure.

Utilization of blue panic (Panicum antidotale) as an alternative feed resource for feeding Barky sheep in arid regions.

This study aimed at elucidating effects of replacing sorghum with blue panic (BP) on total dry matter intake (TDMI), average daily gain (ADG), feed conversion ratio (FCR), apparent nutrient digestibility, blood biochemical constituents, rumen fermentation patterns and economic feasibility of Barky male lambs. Fifteen lambs (av. BW, 22.5 ± 1.6 kg) were randomly allotted into 3 treatments (n = 5/group). Control lambs were given a diet of concentrate mixture (CM) plus sorghum (S), BP50% lambs were given a diet of CM plus (S: PB 1:1) and BP100% lambs were given CM plus PB. The experiment lasted for 54 days. At the last week of the experiment, the apparent nutrient digestibility coefficients were determined using lignin contents of feeds and faeces as an internal marker. Blood samples were collected at weeks 3, 5 and 7 to determine serum biochemical parameters. Results showed that TDMI significantly (P < 0.05) influenced by diet, whereas ADG was not affected. Mean FCR values were 5.67, 5.46 and 5.86 for control, BP50% and BP100%, respectively. Neither nutrients digestibility nor ruminal fermentation parameters were affected (P > 0.05) by total replacement of sorghum with BP. Likewise, none of the serum biochemical constituents were different in BP than in control lambs. This study concluded that BP grass would be considered as one of the promising tropical green forages in the arid regions as an alternative feedstuff in case of shortage of green fodders.

Biological and economic performance of genetic groups under different diets / Desempenho biológico e econômico de grupos genéticos sob diferentes dietas

A grazing trial to evaluate biological and economic efficiencies for rearing young animals exclusively on pasture from weaning at 7 months of age, with average initial weight of 220 ± 12 kg, to slaughter was conducted from May 2006 to October 2007. Two levels of combined supplementation during the first dry period and four genetic groups (F1 Angus-Nellore; ½Braford-»Angus-»Nellore; ½Brahman-»Angus-»Nellore; and ⅝Charolais-⅜Nellore) were used following a 4 by 2 factorial arrangement and eight replications in a completely randomized design. During both dry periods, eight paddocks of deferredBrachiaria brizantha were utilized. During the first dry period, concentrated mix (CM) and protein-mineral mixture (PMM) were provided in quantities of 0.8% and 0.2% of body weight (BW), respectively, for 142 days. During the subsequent rainy period, the animals were transferred to eight guinea grass paddocks for 197 days. During the second dry period, the animals were allocated to the same eight palisade grass paddocks used during the previous dry season. Steers had received supplementary diet with the same CM used before at 0.8% of BW. Animals supplemented with CM gained more BW than those supplemented with PMM; however, during the rainy season, steers supplemented with PMM performed better than those receiving CM during the preceding dry period. Using concentrate since the first dry season is a risky option in economic terms, as only the Angus-Nellore group showed a positive but small gain.(AU)

O experimento foi conduzido de maio de 2016 a outubro de 2017 com o objetivo de avaliar as eficiências biológica e econômica de animais exclusivamente em pastos, da desmama ao abate. Foram avaliados dois níveis de suplementação alimentar combinados com quatro grupos genéticos durante o período seco: F1 Angus-Nelore; ½Braford-»Angus-»Nelore; ½Brahman-»Angus-»Nelore; e⅝Charolais-⅜Nelore, seguindo-se um arranjo fatorial 4 x 2 com oito repetições em delineamento completamente ao acaso. Durante os dois períodos secos avaliados, oito piquetes de Brachiaria brizantha diferida foram utilizados. No primeiro período seco, mistura concentrada (MC) e mistura mineral múltipla (MMM) foram fornecidas nas quantidades de 0,8 e 0,2% do peso vivo (PV), respectivamente, durante 142 dias. Durante a estação das águas subsequente, todos os animais foram transferidos para oito piquetes de Panicum maximum, por 197 dias. No segundo período seco, os animais foram alocados nos mesmos oito piquetes de braquiária utilizados no período seco anterior e receberam suplementação alimentar MC, no mesmo nível, 0,8% PV utilizado anteriormente. Animais suplementados com MC apresentaram maior ganho de peso que animais recebendo MMM; entretanto, durante o período chuvoso, estes animais apresentaram melhor desempenho que àqueles que receberam MC durante o período seco. Animais Angus-Nelore apresentaram desempenho superior aos demais cruzamentos, destacando-se a precocidade da raça em alcançar o ponto de abate. A utilização de suplemento concentrado desde a primeira seca após desmama é uma opção de risco econômico, uma vez que apenas o grupo genético Angus-Nelore apresentou pequeno incremento positivo de ganho.(AU)

Elucidation and analyses of the regulatory networks of upland and lowland ecotypes of switchgrass in response to drought and salt stresses.

Switchgrass is an important bioenergy crop typically grown in marginal lands, where the plants must often deal with abiotic stresses such as drought and salt. Alamo is known to be more tolerant to both stress types than Dacotah, two ecotypes of switchgrass. Understanding of their stress response and adaptation programs can have important implications to engineering more stress tolerant plants. We present here a computational study by analyzing time-course transcriptomic data of the two ecotypes to elucidate and compare their regulatory systems in response to drought and salt stresses. A total of 1,693 genes (target genes or TGs) are found to be differentially expressed and possibly regulated by 143 transcription factors (TFs) in response to drought stress together in the two ecotypes. Similarly, 1,535 TGs regulated by 110 TFs are identified to be involved in response to salt stress. Two regulatory networks are constructed to predict their regulatory relationships. In addition, a time-dependent hidden Markov model is derived for each ecotype responding to each stress type, to provide a dynamic view of how each regulatory network changes its behavior over time. A few new insights about the response mechanisms are predicted from the regulatory networks and the time-dependent models. Comparative analyses between the network models of the two ecotypes reveal key commonalities and main differences between the two regulatory systems. Overall, our results provide new information about the complex regulatory mechanisms of switchgrass responding to drought and salt stresses.

Impact of Nitrogen Application Rate on Switchgrass Yield, Production Costs, and Nitrous Oxide Emissions.

Switchgrass ( L.) has been promoted as a potential feedstock for cellulosic biofuel in the United States. Switchgrass is known to respond to N fertilizer, but optimal rates remain unclear. Given the potential nonlinear response of nitrous oxide (NO) emissions to N inputs, N additions to switchgrass above optimal levels could have large impacts on the greenhouse gas balance of switchgrass-based biofuel. Additionally, N additions are likely to have large impacts on switchgrass production costs. Yield, N removal, and net returns were measured in switchgrass receiving 0 to 200 kg N ha in Manhattan, KS, from 2012 to 2014. Emissions of NO were measured in the 0- to 150-kg N ha treatments. Total emissions of NO increased from 0.2 to 3.0 kg NO-N ha as N inputs increased from 0 to 150 kg N ha. The 3-yr averages of fertilizer-induced emission factors were 0.7, 2.1, and 2.6% at 50, 100, and 150 kg N ha, respectively. Removal of N at harvest increased linearly with increasing N rate. Switchgrass yields increased with N inputs up to 100 to 150 kg N ha, but the critical N level for maximum yields decreased each year, suggesting that N was being applied in excess at higher N rates. Net returns were maximized at 100 kg N ha at both a high and low urea cost (US$394.71 and $945.91 ha, respectively). These results demonstrate that N inputs were necessary to increase switchgrass productivity, but rates exceeding optimal levels resulted in excessive NO emissions and increased costs for producers.

Agricultural Worker Injury Comparative Risk Assessment Methodology: Assessing Corn and Biofuel Switchgrass Production Systems.

Keeping workers safe is a continuing challenge in agricultural production. Risk assessment methodologies have been used widely in other industries to better understand systems and enhance decision making, yet their use in production agriculture has been limited. This article describes the considerations and the approach taken to measure the difference in worker injury risks between two agricultural production systems. A model was developed specifically for the comparison of worker injury risk between corn and biofuel switchgrass production systems. The model is composed of injury and exposure values that were used in a Monte Carlo simulation. The output of this risk assessment shows that approximately 99% of the values from the Monte Carlo simulation rank corn production as a greater worker injury risk than biofuel switchgrass production. Furthermore, the greatest contributing factors for each production system were identified as harvest, and that finding aligns with current literature.

Hydrologic cost-effectiveness ratio favors switchgrass production on marginal croplands over existing grasslands.

Switchgrass (Panicum virgatum L.) has attracted attention as a promising second generation biofuel feedstock. Both existing grasslands and marginal croplands have been suggested as targets for conversion to switchgrass, but the resulting production potentials and hydrologic impacts are not clear. The objectives of this study were to model switchgrass production on existing grasslands (scenario-I) and on marginal croplands that have severe to very severe limitations for crop production (scenario-II) and to evaluate the effects on evapotranspiration (ET) and streamflow. The Soil and Water Assessment Tool (SWAT) was applied to the 1063 km2 Skeleton Creek watershed in north-central Oklahoma, a watershed dominated by grasslands (35%) and winter wheat cropland (47%). The simulated average annual yield (2002-2011) for rainfed Alamo switchgrass for both scenarios was 12 Mg ha-1. Yield varied spatially under scenario-I from 6.1 to 15.3 Mg ha-1, while under scenario-II the range was from 8.2 to 13.8 Mg ha-1. Comparison of average annual ET and streamflow between the baseline simulation (existing land use) and scenario-I showed that scenario-I had 5.6% (37 mm) higher average annual ET and 27.7% lower streamflow, representing a 40.7 million m3 yr-1 streamflow reduction. Compared to the baseline, scenario-II had only 0.5% higher ET and 3.2% lower streamflow, but some monthly impacts were larger. In this watershed, the water yield reduction per ton of biomass production (i.e. hydrologic cost-effectiveness ratio) was more than 5X greater under scenario-I than under scenario-II. These results suggest that, from a hydrologic perspective, it may be preferable to convert marginal cropland to switchgrass production rather than converting existing grasslands.

Assessment of fluoride retention in jowar consuming population: A cross-sectional study.

INTRODUCTION: Dental fluorosis is considered as a serious public health problem in India. Water is usually the major source of fluoride exposure, but this is not the case always as exposure to local factors like diet can be important in some situations. Earlier studies have shown that jowar (a millet) consumption interacts with fluoride in the body and elevate fluorosis. AIM AND OBJECTIVE: To determine the association between jowar consumption and severity of dental fluorosis. MATERIALS AND METHODS: Hundred schoolgoing children of 10-14 years old was selected by random sampling from Wadloor village. Dental fluorosis was measured in children by Thylstrup-Fejerskov index (1988). Twenty-four hours diet recall method was used to know the exposure to jowar of the children. A pretested questionnaire was given to mother or caretaker to record the jowar consumption. Spot urine samples of children were collected in plastic containers (20 ml) and brought to the laboratory in icebox. Ion selective electrode method was used to measure the fluoride level in urine samples of children. RESULTS: On comparison of the quantity of jowar and fluorosis using Pearson Chi-square test, difference among variable was found out to be statistically significant (P = 0.013, P < 0.05). On comparison of quantity jowar consumption and urinary fluoride level using Pearson Chi-square test, the difference among variable was found statistically significant (P < 0.001). CONCLUSION: Jowar consuming population was positively associated with severity of dental fluorosis.

Uncertainty in the Life Cycle Greenhouse Gas Emissions from U.S. Production of Three Biobased Polymer Families.

Interest in biobased products has been motivated, in part, by the claim that these products have lower life cycle greenhouse gas (GHG) emissions than their fossil counterparts. This study investigates GHG emissions from U.S. production of three important biobased polymer families: polylactic acid (PLA), polyhydroxybutyrate (PHB) and bioethylene-based plastics. The model incorporates uncertainty into the life cycle emission estimates using Monte Carlo simulation. Results present a range of scenarios for feedstock choice (corn or switchgrass), treatment of coproducts, data sources, end of life assumptions, and displaced fossil polymer. Switchgrass pathways generally have lower emissions than corn pathways, and can even generate negative cradle-to-gate emissions if unfermented residues are used to coproduce energy. PHB (from either feedstock) is unlikely to have lower emissions than fossil polymers once end of life emissions are included. PLA generally has the lowest emissions when compared to high emission fossil polymers, such as polystyrene (mean GHG savings up to 1.4 kg CO2e/kg corn PLA and 2.9 kg CO2e/kg switchgrass PLA). In contrast, bioethylene is likely to achieve the greater emission reduction for ethylene intensive polymers, like polyethylene (mean GHG savings up to 0.60 kg CO2e/kg corn polyethylene and 3.4 kg CO2e/kg switchgrass polyethylene).

The cost of feeding bred dairy heifers on native warm-season grasses and harvested feedstuffs.

Heifer rearing is one of the largest production expenses for dairy cattle operations, which is one reason milking operations outsource heifer rearing to custom developers. The cost of harvested feedstuffs is a major expense in heifer rearing. A possible way to lower feed costs is to graze dairy heifers, but little research exists on this topic in the mid-south United States. The objectives of this research were to determine the cost of feeding bred dairy heifers grazing native warm-season grasses (NWSG), with and without legumes, and compare the cost of grazing with the cost of rearing heifers using 3 traditional rations. The 3 rations were corn silage with soybean meal, corn silage with dry distillers grain, and a wet distillers grain-based ration. Bred Holstein heifers between 15- and 20-mo-old continuously grazed switchgrass (SG), SG with red clover (SG+RC), a big bluestem and Indiangrass mixture (BBIG), and BBIG with red clover (BBIG+RC) in Tennessee during the summer months. Total grazing days were calculated for each NWSG to determine the average cost/animal per grazing day. The average daily gain (ADG) was calculated for each NWSG to develop 3 harvested feed rations that would result in the same ADG over the same number of grazing day as each NWSG treatment. The average cost/animal per grazing day was lowest for SG ($0.48/animal/grazing d) and highest for BBIG+RC ($1.10/animal/grazing d). For both BBIG and SG, legumes increased the average cost/animal per grazing day because grazing days did not increase enough to account for the additional cost of the legumes. No difference was observed in ADG for heifers grazing BBIG (0.85 kg/d) and BBIG+RC (0.94 kg/d), and no difference was observed in ADG for heifers grazing SG (0.71 kg/d) and SG+RC (0.70 kg/d). However, the ADG for heifers grazing SG and SG+RC was lower than the ADG for heifers grazing either BBIG or BBIG+RC. The average cost/animal per grazing day was lower for all NWSG treatments than the average cost/animal per day for all comparable feed rations at a low, average, and high yardage fee. Results of this study suggest that SG was the most cost-effective NWSG alternative to harvested feeds for bred dairy heifer rearing.

Development of a rapid, low-cost protoplast transfection system for switchgrass (Panicum virgatum L.).

KEY MESSAGE: A switchgrass protoplast system was developed, achieving a cost reduction of ~1000-fold, a threefold increase in transformation efficiency, and a fourfold reduction in required DNA quantity compared to previous methods. In recent years, there has been a resurgence in the use of protoplast systems for rapid screening of gene silencing and genome-editing targets for siRNA, miRNA, and CRISPR technologies. In the case of switchgrass (Panicum virgatum L.), to achieve economic feasibility for biofuel production, it is necessary to develop plants with decreased cell wall recalcitrance to reduce processing costs. To achieve this goal, transgenic plants have been generated with altered cell wall chemistry; however, with limited success owing to the complexity of cell walls. Because of the considerable cost, time, and effort required to screen transgenic plants, a protoplast system that can provide data at an early stage has potential to eliminate low performing candidate genes/targets prior to the creation of transgenic plants. Despite the advantages of protoplast systems, protoplast isolation in switchgrass has proven costly, requiring expensive lab-grade enzymes and high DNA quantities. In this paper, we describe a low-cost protoplast isolation system using a mesophyll culture approach and a cell suspension culture. Results from this work show a cost reduction of ~1000-fold compared to previous methods of protoplast isolation in switchgrass, with a cost of $0.003 (USD) per reaction for mesophyll protoplasts and $0.018 for axenic cell culture-derived protoplasts. Further, the efficiency of protoplast transformation was optimized threefold over previous methods, despite a fourfold reduction in DNA quantity. The methods developed in this work remove the cost barrier previously limiting high-throughput screening of genome-editing and gene silencing targets in switchgrass, paving the way for more efficient development of transgenic plants.

Ethanol and High-Value Terpene Co-Production from Lignocellulosic Biomass of Cymbopogon flexuosus and Cymbopogon martinii.

Cymbopogon flexuosus, lemongrass, and C. martinii, palmarosa, are perennial grasses grown to produce essential oils for the fragrance industry. The objectives of this study were (1) to evaluate biomass and oil yields as a function of nitrogen and sulfur fertilization, and (2) to characterize their utility for lignocellulosic ethanol compared to Panicum virgatum (switchgrass). Mean biomass yields were 12.83 Mg lemongrass ha-1 and 15.11 Mg palmarosa ha-1 during the second harvest year resulting in theoretical biofuel yields of 2541 and 2569 L ethanol ha-1 respectively compared to reported 1749-3691 L ethanol ha-1 for switchgrass. Pretreated lemongrass yielded 198 mL ethanol (g biomass)-1 and pretreated palmarosa yielded 170 mL ethanol (g biomass)-1. Additionally, lemongrass yielded 85.7 kg essential oil ha-1 and palmarosa yielded 67.0 kg ha-1 with an estimated value of USD $857 and $1005 ha-1. These data suggest that dual-use crops such as lemongrass and palmarosa may increase the economic viability of lignocellulosic biofuels.

Biomass logistics analysis for large scale biofuel production: case study of loblolly pine and switchgrass.

The objective of this study was to assess the costs, energy consumption and greenhouse gas (GHG) emissions throughout the biomass supply chain for large scale biofuel production. Two types of energy crop were considered, switchgrass and loblolly pine, as representative of herbaceous and woody biomass. A biomass logistics model has been developed to estimate the feedstock supply system from biomass production through transportation. Biomass in the form of woodchip, bale and pellet was investigated with road, railway and waterway transportation options. Our analysis indicated that the farm or forest gate cost is lowest for loblolly pine whole tree woodchip at $39.7/dry tonne and highest for switchgrass round bale at $72.3/dry tonne. Switchgrass farm gate GHG emissions is approximately 146kgCO2e/dry tonne, about 4 times higher than loblolly pine. The optimum biomass transportation mode and delivered form are determined by the tradeoff between fixed and variable costs for feedstock shipment.

Changing the renewable fuel standard to a renewable material standard: bioethylene case study.

The narrow scope of the U.S. renewable fuel standard (RFS2) is a missed opportunity to spur a wider range of biomass use. This is especially relevant as RFS2 targets are being missed due to demand-side limitations for ethanol consumption. This paper examines the greenhouse gas (GHG) implications of a more flexible policy based on RFS2, which includes credits for chemical use of bioethanol (to produce bioethylene). A Monte Carlo simulation is employed to estimate the life-cycle GHG emissions of conventional low-density polyethylene (LDPE), made from natural gas derived ethane (mean: 1.8 kg CO2e/kg LDPE). The life-cycle GHG emissions from bioethanol and bio-LDPE are examined for three biomass feedstocks: U.S. corn (mean: 97g CO2e/MJ and 2.6 kg CO2e/kg LDPE), U.S. switchgrass (mean: -18g CO2e/MJ and -2.9 kg CO2e/kg LDPE), and Brazilian sugar cane (mean: 33g CO2e/MJ and -1.3 kg CO2e/kg LDPE); bioproduct and fossil-product emissions are compared. Results suggest that neither corn product (bioethanol or bio-LDPE) can meet regulatory GHG targets, while switchgrass and sugar cane ethanol and bio-LDPE likely do. For U.S. production, bioethanol achieves slightly greater GHG reductions than bio-LDPE. For imported Brazilian products, bio-LDPE achieves greater GHG reductions than bioethanol. An expanded policy that includes bio-LDPE provides added flexibility without compromising GHG targets.

Quantitation of sugar content in pyrolysis liquids after acid hydrolysis using high-performance liquid chromatography without neutralization.

A rapid method for the quantitation of total sugars in pyrolysis liquids using high-performance liquid chromatography (HPLC) was developed. The method avoids the tedious and time-consuming sample preparation required by current analytical methods. It is possible to directly analyze hydrolyzed pyrolysis liquids, bypassing the neutralization step usually required in determination of total sugars. A comparison with traditional methods was used to determine the validity of the results. The calibration curve coefficient of determination on all standard compounds was >0.999 using a refractive index detector. The relative standard deviation for the new method was 1.13%. The spiked sugar recoveries on the pyrolysis liquid samples were between 104 and 105%. The research demonstrates that it is possible to obtain excellent accuracy and efficiency using HPLC to quantitate glucose after acid hydrolysis of polymeric and oligomeric sugars found in fast pyrolysis bio-oils without neutralization.

A statistical model for QTL mapping in polysomic autotetraploids underlying double reduction.

As a group of economically important species, linkage mapping of polysomic autotetraploids, including potato, sugarcane and rose, is difficult to conduct due to their unique meiotic property of double reduction that allows sister chromatids to enter into the same gamete. We describe and assess a statistical model for mapping quantitative trait loci (QTLs) in polysomic autotetraploids. The model incorporates double reduction, built in the mixture model-based framework and implemented with the expectation-maximization algorithm. It allows the simultaneous estimation of QTL positions, QTL effects and the degree of double reduction as well as the assessment of the estimation precision of these parameters. We performed computer simulation to examine the statistical properties of the method and validate its use through analyzing real data in tetraploid switchgrass.

Gluten contamination of naturally gluten-free flours and starches used by Canadians with celiac disease.

A large national investigation into the extent of gluten cross-contamination of naturally gluten-free ingredients (flours and starches) sold in Canada was performed. Samples (n = 640) were purchased from eight Canadian cities and via the internet during the period 2010-2012 and analysed for gluten contamination. The results showed that 61 of the 640 (9.5%) samples were contaminated above the Codex-recommended maximum level for gluten-free products (20 mg kg⁻¹) with a range of 5-7995 mg kg⁻¹. For the ingredients that were labelled gluten-free the contamination range (5-141 mg kg⁻¹) and number of samples were lower (3 of 268). This picture was consistent over time, with approximately the same percentage of samples above 20 mg kg⁻¹ in both the initial set and the subsequent lot. Looking at the total mean (composite) contamination for specific ingredients the largest and most consistent contaminations come from higher fibre ingredients such as soy (902 mg kg⁻¹), millet (272 mg kg⁻¹) and buckwheat (153 mg kg⁻¹). Of the naturally gluten-free flours and starches tested that do not contain a gluten-free label, the higher fibre ingredients would constitute the greatest probability of being contaminated with gluten above 20 mg kg⁻¹.