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1.
ACS Chem Neurosci ; 14(15): 2727-2742, 2023 08 02.
Artigo em Inglês | MEDLINE | ID: mdl-37474114

RESUMO

Serotonergic psychedelics are described to have activation of the serotonin 2A receptor (5-HT2A) as their main pharmacological action. Despite their relevance, the molecular mechanisms underlying the psychedelic effects induced by certain 5-HT2A agonists remain elusive. One of the proposed hypotheses is the occurrence of biased agonism, defined as the preferential activation of certain signaling pathways over others. This study comparatively monitored the efficiency of a diverse panel of 4-position-substituted (and N-benzyl-derived) phenylalkylamines to induce recruitment of ß-arrestin2 (ßarr2) or miniGαq to the 5-HT2A, allowing us to assess structure-activity relationships and biased agonism. All test compounds exhibited agonist properties with a relatively large range of both EC50 and Emax values. Interestingly, the lipophilicity of the 2C-X phenethylamines was correlated with their efficacy in both assays but yielded a stronger correlation in the miniGαq- than in the ßarr2-assay. Molecular docking suggested that accommodation of the 4-substituent of the 2C-X analogues in a hydrophobic pocket between transmembrane helices 4 and 5 of 5-HT2A may contribute to this differential effect. Aside from previously used standard conditions (lysergic acid diethylamide (LSD) as a reference agonist and a 2 h activation profile to assess a compound's activity), serotonin was included as a second reference agonist, and the compounds' activities were also assessed using the first 30 min of the activation profile. Under all assessed circumstances, the qualitative structure-activity relationships remained unchanged. Furthermore, the use of two reference agonists allowed for the estimation of both "benchmark bias" (relative to LSD) and "physiology bias" (relative to serotonin).


Assuntos
Alucinógenos , Serotonina , Receptor 5-HT2A de Serotonina , Simulação de Acoplamento Molecular , Alucinógenos/farmacologia , Alucinógenos/química , Fenetilaminas/farmacologia , Agonistas do Receptor 5-HT2 de Serotonina/farmacologia
2.
Gen Hosp Psychiatry ; 36(6): 753-6, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-25041634

RESUMO

OBJECTIVE: The studies regarding the role of genes polymorphism in development of postoperative delirium are extremely rare. Therefore, we investigated the potential association of polymorphism in 5HT2a receptor gene and N-methyl-d-aspartate (NMDA) receptor 3A and 2B subunits genes with postoperative delirium. METHOD: We conducted a prospective, nested, case-control study. For analysis, 3723 G/A (rs3739722) polymorphism in the GRIN3A gene, 421 C/A (rs3764028) polymorphism in the GRIN2B gene and T102C (rs6313) polymorphism in the 5HT2A gene were selected. RESULTS: Genetic analysis confirmed that there were significant differences in genotype frequencies for 3723 G/A between delirium patients and controls. No other significant associations were observed. Moreover, according to the multivariate conditional logistic regression analysis the presence of AG haplotype of GRIN3A gene was independently associated with postoperative delirium. CONCLUSIONS: These findings suggest that the genetic variations of NR3A subunit of NMDA receptor may be a predisposing factor to delirium among the Polish population of cardiac surgery patients.


Assuntos
Ponte de Artéria Coronária/efeitos adversos , Delírio/genética , Complicações Pós-Operatórias/genética , Receptor 5-HT2A de Serotonina/genética , Receptores de N-Metil-D-Aspartato/genética , Idoso , Estudos de Casos e Controles , Delírio/etiologia , Feminino , Frequência do Gene , Humanos , Masculino , Pessoa de Meia-Idade , Polônia , Polimorfismo Genético
3.
Transl Psychiatry ; 3: e242, 2013 Mar 19.
Artigo em Inglês | MEDLINE | ID: mdl-23511609

RESUMO

Antidepressants are among the most widely prescribed medications, yet only 35-45% of patients achieve remission following an initial antidepressant trial. The financial burden of treatment failures in direct treatment costs, disability claims, decreased productivity, and missed work may, in part, derive from a mismatch between optimal and actual prescribed medications. The present 1 year blinded and retrospective study evaluated eight direct or indirect health care utilization measures for 96 patients with a DSM-IV-TR diagnosis of depressive or anxiety disorder. The eight measures were evaluated in relation to an interpretive pharmacogenomic test and reporting system, designed to predict antidepressant responses based on DNA variations in cytochrome P450 genes (CYP2D6, CYP2C19, CYP2C9 and CYP1A2), the serotonin transporter gene (SLC6A4) and the serotonin 2A receptor gene (5HTR2A). All subjects had been prescribed at least one of 26 commonly prescribed antidepressant or antipsychotic medications. Subjects whose medication regimen included a medication identified by the gene-based interpretive report as most problematic for that patient and are in the 'red bin' (medication status of 'use with caution and frequent monitoring'), had 69% more total health care visits, 67% more general medical visits, greater than three-fold more medical absence days, and greater than four-fold more disability claims than subjects taking drugs categorized by the report as in the green bin ('use as directed') or yellow bin ('use with caution'). There were no correlations between the number of medications taken and any of the eight healthcare utilization measures. These results demonstrate that retrospective psychiatric pharmacogenomic testing can identify past inappropriate medication selection, which led to increased healthcare utilization and cost.


Assuntos
Antidepressivos/economia , Transtornos de Ansiedade/economia , Transtorno Depressivo/economia , Recursos em Saúde/estatística & dados numéricos , Farmacogenética/economia , Adulto , Análise de Variância , Antidepressivos/uso terapêutico , Transtornos de Ansiedade/tratamento farmacológico , Sistema Enzimático do Citocromo P-450/genética , Transtorno Depressivo/tratamento farmacológico , Recursos em Saúde/economia , Humanos , Prescrição Inadequada/economia , Pessoa de Meia-Idade , Receptor 5-HT2A de Serotonina/genética , Estudos Retrospectivos , Proteínas da Membrana Plasmática de Transporte de Serotonina/genética
4.
Proc Natl Acad Sci U S A ; 110(10): 3955-60, 2013 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-23431136

RESUMO

Punishment of free-riding has been implicated in the evolution of cooperation in humans, and yet mechanisms for punishment avoidance remain largely uninvestigated. Individual variation in these mechanisms may stem from variation in the serotonergic system, which modulates processing of aversive stimuli. Functional serotonin gene variants have been associated with variation in the processing of aversive stimuli and widely studied as risk factors for psychiatric disorders. We show that variants at the serotonin transporter gene (SLC6A4) and serotonin 2A receptor gene (HTR2A) predict contributions to the public good in economic games, dependent upon whether contribution behavior can be punished. Participants with a variant at the serotonin transporter gene contribute more, leading to group-level differences in cooperation, but this effect dissipates in the presence of punishment. When contribution behavior can be punished, those with a variant at the serotonin 2A receptor gene contribute more than those without it. This variant also predicts a more stressful experience of the games. The diversity of institutions (including norms) that govern cooperation and punishment may create selective pressures for punishment avoidance that change rapidly across time and space. Variant-specific epigenetic regulation of these genes, as well as population-level variation in the frequencies of these variants, may facilitate adaptation to local norms of cooperation and punishment.


Assuntos
Comportamento Cooperativo , Variação Genética , Punição/psicologia , Receptor 5-HT2A de Serotonina/genética , Proteínas da Membrana Plasmática de Transporte de Serotonina/genética , Evolução Molecular , Feminino , Teoria dos Jogos , Haplótipos , Humanos , Masculino , Modelos Econômicos , Modelos Psicológicos , Adulto Jovem
5.
Mol Imaging Biol ; 15(4): 376-83, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23306971

RESUMO

PURPOSE: [11C]Cimbi-36 was recently developed as an agonist radioligand for brain imaging of serotonin 2A receptors (5-HT2A) with positron emission tomography (PET). This may be used to quantify the high-affinity state of 5-HT2A receptors and may have the potential to quantify changes in cerebral 5-HT levels in vivo. We here investigated safety aspects related to clinical use of [11C]Cimbi-36, including radiation dosimetry and in vivo pharmacology. PROCEDURES: [11C]Cimbi-36 was injected in rats or pigs, and radiation dosimetry was examined by ex vivo dissection or with PET scanning, respectively. Based on animal data, the Organ Level INternal Dose Assessment software was used to estimate extrapolated human dosimetry for [11C]Cimbi-36. The 5-HT2A receptor agonist actions of [11C]Cimbi-36 in vivo pharmacological effects in mice elicited by increasing doses of Cimbi-36 were assessed with the head-twitch response (HTR). RESULTS: The effective dose as extrapolated from both rat and pig data was low, 7.67 and 4.88 µSv/MBq, respectively. In addition, the estimated absorbed radiation dose to human target organs did not exceed safety levels. Administration of 0.5 mg/kg Cimbi-36 leads to significant HTR compared to saline, whereas 0.05 mg/kg Cimbi-36 (doses much larger than those given in conjunction with a PET scan) did not elicit a significant HTR. CONCLUSIONS: Administration of tracer doses of [11C]Cimbi-36 does not seem to be associated with unusual radiation burden or adverse clinical effects.


Assuntos
Benzilaminas/efeitos adversos , Fenetilaminas/efeitos adversos , Tomografia por Emissão de Pósitrons , Receptor 5-HT2A de Serotonina/metabolismo , Agonistas do Receptor 5-HT2 de Serotonina/efeitos adversos , Animais , Benzilaminas/síntese química , Benzilaminas/química , Benzilaminas/farmacocinética , Relação Dose-Resposta à Radiação , Humanos , Ligantes , Camundongos , Fenetilaminas/síntese química , Fenetilaminas/química , Fenetilaminas/farmacocinética , Radiometria , Ratos , Agonistas do Receptor 5-HT2 de Serotonina/síntese química , Agonistas do Receptor 5-HT2 de Serotonina/química , Agonistas do Receptor 5-HT2 de Serotonina/farmacocinética , Sus scrofa , Distribuição Tecidual/efeitos dos fármacos , Imagem Corporal Total
6.
Can J Neurol Sci ; 38(2): 303-8, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21320838

RESUMO

BACKGROUND: 5-hydroxytryptamine receptor 2A (5-HT2A) participates in diverse psychiatric disorders by regulating the activity of serotonin. Some previous studies have also suggested that the receptor is involved in cognitive abilities of disease groups. We hypothesize that some functional genetic variants in 5-HT2A have certain specific influences on cognitive abilities in a normal population. METHOD: To confirm this hypothesis, two polymorphisms (rs6313 and rs4941573) in 5-HT2A were selected, and a population-based study was performed in a young healthy Chinese Han cohort. RESULTS: The results indicated that the rs6313 and rs4941573 were associated with touching blocks and mental rotation-3D error ratio in males, and the rs4941573 was associated with visuo-spatial working memory in the whole cohort. CONCLUSION: All the findings suggest that 5-HT2A participates in human spatial cognitive abilities and spatial working memory.


Assuntos
Memória de Curto Prazo/fisiologia , Polimorfismo de Nucleotídeo Único/genética , Receptor 5-HT2A de Serotonina/genética , Percepção Espacial/fisiologia , Adolescente , Adulto , Povo Asiático , Planejamento em Saúde Comunitária , Feminino , Estudo de Associação Genômica Ampla , Genótipo , Humanos , Masculino , Testes Neuropsicológicos , Fatores Sexuais , Estatísticas não Paramétricas , Adulto Jovem
8.
Eur J Nucl Med Mol Imaging ; 36(2): 287-93, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-18828013

RESUMO

PURPOSE: The serotonin 2A (5-HT(2A)) receptor is of interest in several psychiatric and neurological diseases. In the present study we investigated the longitudinal stability of 5-HT(2A) receptors and the stability of the quantification procedure in the elderly in order to be able to study elderly patients with neuropsychiatric diseases on a longitudinal basis. METHODS: [(18)F]-Altanserin PET was used to quantify 5-HT(2A) receptors in 12 healthy elderly individuals at baseline and at 2 years in six volumes of interest. A bolus/infusion protocol was used to achieve the binding potential, BP(P). The reproducibility as assessed in terms of variability and the reliability as assessed in terms of intraclass correlation coefficient (ICC) were used to compare inter- and intraobserver stability and to evaluate the effects of increasing complexity of partial volume (PV) corrections. We also compared the stability of our measurements over 2 years with the stability of data from an earlier study with 2-week test-retest measurements. RESULTS: BP(P) was unaltered at follow-up without the use of PV correction and when applying two-tissue PV correction, test-retest reproducibility was 12-15% and reliability 0.45-0.67 in the large bilateral regions such as the parietal, temporal, occipital and frontal cortices, while orbitofrontal and anterior cingulate cortical regions were less stable. The use of PV correction decreased the variability but also decreased the between-subject variation, thereby worsening the reliability. CONCLUSION: In healthy elderly individuals, brain 5-HT(2A) receptor binding remains stable over 2 years, and acceptable reproducibility and reliability in larger regions and high intra- and interobserver stability allow the use of [(18)F]-altanserin in longitudinal studies of patients with neuropsychiatric disorders.


Assuntos
Cérebro/diagnóstico por imagem , Cérebro/metabolismo , Radioisótopos de Flúor/química , Ketanserina/análogos & derivados , Receptor 5-HT2A de Serotonina/metabolismo , Idoso , Feminino , Saúde , Humanos , Ketanserina/química , Estudos Longitudinais , Masculino , Pessoa de Meia-Idade , Variações Dependentes do Observador , Tomografia por Emissão de Pósitrons/estatística & dados numéricos , Reprodutibilidade dos Testes
9.
Naunyn Schmiedebergs Arch Pharmacol ; 376(5): 351-61, 2008 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-18060386

RESUMO

Wf-516 is a potential novel antidepressant. It has high affinity for serotonin (5-hydroxytryptamine; 5-HT) transporters, 5-HT(1A) and 5-HT(2A) receptors. In the present study, the pharmacologic properties of Wf-516 were thus assessed using in vivo electrophysiology in the rat dorsal raphe nucleus (DRN), locus coeruleus (LC) and hippocampus. Glass microelectrodes were lowered into the DRN, LC or hippocampus, and neurons were recorded and tested using systemic or microiontophoretic injections of drugs. In the DRN, cumulative doses of 0.5 mg/kg of Wf-516 were injected intravenously and total inhibition of 5-HT neurons firing was obtained with 2.8 +/- 0.3 mg/kg. The administration of 1 mg/kg of Wf-516, which by itself did not induce a change in the firing of 5-HT neurons, markedly attenuated the inhibitory effect of the 5-HT(1A) autoreceptor agonist LSD, indicating that Wf-516 is a 5-HT(1A) autoreceptor antagonist. In the LC, 1 mg/kg of Wf-516 dampened the inhibitory effect of the preferential 5-HT(2A) agonist DOI on norepinephrine (NE) neurons, indicating that Wf-516 is also a 5-HT(2A) receptor antagonist. In the hippocampus, cumulative intravenous doses of Wf-516 significantly increased the recovery time of firing activity of CA(3) pyramidal neurons after 5-HT applications, indicating an inhibitory effect on 5-HT reuptake. Unlike the 5-HT(1A) antagonist WAY100635, Wf-516 did not block the inhibitory effect of microiontophoretic application of 5-HT, indicating that this drug is devoid of 5-HT(1A) receptor antagonistic activity in this postsynaptic structure. These properties of WF-516 define the transporter/receptorial profile of an antidepressant with superior effectiveness.


Assuntos
Antidepressivos/farmacologia , Oxidiazóis/farmacologia , Piperidinas/farmacologia , Antagonistas do Receptor 5-HT1 de Serotonina , Antagonistas do Receptor 5-HT2 de Serotonina , Animais , Antidepressivos/administração & dosagem , Relação Dose-Resposta a Droga , Eletrofisiologia , Hipocampo/efeitos dos fármacos , Hipocampo/metabolismo , Injeções Intravenosas , Locus Cerúleo/efeitos dos fármacos , Locus Cerúleo/metabolismo , Masculino , Microeletrodos , Neurônios/efeitos dos fármacos , Neurônios/metabolismo , Oxidiazóis/administração & dosagem , Piperidinas/administração & dosagem , Núcleos da Rafe/efeitos dos fármacos , Núcleos da Rafe/metabolismo , Ratos , Ratos Sprague-Dawley , Receptor 5-HT1A de Serotonina/metabolismo , Receptor 5-HT2A de Serotonina/metabolismo , Serotonina/metabolismo
10.
Mol Pharmacol ; 72(5): 1200-9, 2007 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-17715398

RESUMO

We assessed the relative importance of two serine residues located near the top of transmembrane helix 5 of the human 5-HT(2A) receptor, comparing the wild type with S5.43(239)A or S5.46(242)A mutations. Using the ergoline lysergic acid diethylamide (LSD), and a series of substituted tryptamine and phenethylamine 5-HT(2A) receptor agonists, we found that Ser5.43(239) is more critical for agonist binding and function than Ser5.46(242). Ser5.43(239) seems to engage oxygen substituents at either the 4- or 5-position of tryptamine ligands and the 5-position of phenylalkylamine ligands. Even when a direct binding interaction cannot occur, our data suggest that Ser5.43(239) is still important for receptor activation. Polar ring-substituted tryptamine ligands also seem to engage Ser5.46(242), but tryptamines lacking such a substituent may adopt an alternate binding orientation that does not engage this residue. Our results are consistent with the role of Ser5.43(239) as a hydrogen bond donor, whereas Ser5.46(242) seems to serve as a hydrogen bond acceptor. These results are consistent with the functional topography and utility of our in silico-activated homology model of the h5-HT(2A) receptor. In addition, being more distal from the absolutely conserved Pro5.50, a strong interaction with Ser5.43(239) may be more effective in straightening the kink in helix 5, a feature that is possibly common to all type A GPCRs that have polar residues at position 5.43.


Assuntos
Receptor 5-HT2A de Serotonina/metabolismo , Serina/química , Agonistas do Receptor 5-HT2 de Serotonina , Agonistas do Receptor de Serotonina/metabolismo , Triptaminas/metabolismo , Sequência de Aminoácidos , Humanos , Ligação de Hidrogênio , Ligantes , Dados de Sequência Molecular , Receptor 5-HT2A de Serotonina/genética , Serina/genética , Agonistas do Receptor de Serotonina/farmacologia , Triptaminas/farmacologia
11.
Behav Genet ; 37(4): 567-74, 2007 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-17487576

RESUMO

We examined whether the T102C polymorphism of the serotonin receptor 2A gene (HTR2A) moderated the influence of childhood or adolescence parental socioeconomic status (SES) on adulthood temperament trait harm avoidance (HA) in a population-based sample of 1246 healthy Finnish men and women, who were 24-39 years of age in the last follow-up phase. High parental SES predicted low adulthood HA. In addition, the C allele of the T102C polymorphism was associated with high HA in one of the two test settings, and with the mean of the two measurements. Most importantly, we found that the T102C polymorphism moderated the influence of parental SES, such that high parental SES predicted low adulthood HA in subjects with the T/T or T/C genotypes, while this was not true for those carrying the C/C genotype. The role of the T102C polymorphism was most pronounced among those with high parental SES. We conclude that the T102C polymorphism of the HTR2A gene may be involved in the development of temperament by moderating the influence of environmental conditions.


Assuntos
Aprendizagem da Esquiva , Redução do Dano/fisiologia , Pais , Polimorfismo de Nucleotídeo Único , Receptor 5-HT2A de Serotonina/genética , Fatores Socioeconômicos , Temperamento , Adolescente , Adulto , Criança , Doença das Coronárias/epidemiologia , Feminino , Finlândia/epidemiologia , Genótipo , Humanos , Renda , Masculino , Relações Pais-Filho , Personalidade
12.
Int J Neuropsychopharmacol ; 7(4): 489-93, 2004 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-15383158

RESUMO

We performed an association study between four candidate genes, DRD2, DRD3, DRD4 and 5-HT2A for the presence of tardive dyskinesia (TD) on 84 patients with residual schizophrenia. The sample was evaluated again for the presence of TD after an interval of 3 years. The first group did not exhibit TD in either observation (n=34) while in the second group of patients exhibited TD in at least one of the observations (n=20+18). The clinical and socio-demographic characteristics were not significantly different between the two groups; the genetic analysis revealed a significant correlation between the C/C genotype of 5-HT2A and TD (p=0.017). An association trend was observed between the 'short' variant of DRD4 and TD (p=0.022). We did not observe any significant association for the DRD2 and DRD3 polymorphisms.


Assuntos
Antipsicóticos/efeitos adversos , Discinesia Induzida por Medicamentos/epidemiologia , Receptor 5-HT2A de Serotonina/genética , Receptores de Dopamina D2/genética , Esquizofrenia/complicações , Esquizofrenia/genética , Adulto , Idoso , DNA/genética , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Receptores de Dopamina D3 , Receptores de Dopamina D4 , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Psicologia do Esquizofrênico
13.
Assay Drug Dev Technol ; 1(2): 239-49, 2003 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-15090189

RESUMO

The superfamily of GPCRs have diverse biological roles, transducing signals from a range of stimuli, from photon recognition by opsins to neurotransmitter regulation of neuronal function. Of the many identified genes encoding GPCRs, >130 are orphan receptors ( i.e., their endogenous ligands are unknown), and this subset represents putative novel therapeutic targets for pharmaceutical intervention in a variety of diseases. As an initial step toward drug discovery, determining a biological function for these newly identified receptors is of vital importance, and thus identification of a natural ligand(s) is a primary aim. There are several established methods for doing this, but many have drawbacks and usually require some in-depth knowledge about how the receptor functions. The technique described here utilizes a transcription-based reporter assay in live cells. This allows the determination of the signal transduction pathway any given oGPCR uses, without any prior knowledge of the endogenous ligand. This can therefore reduce the redundancy of effort involved in screening ligands at a given receptor in multiple formats (i.e., Galpha(s), Galpha(i/0), and Galpha(q) assays), as well as ensuring that the receptor targeted is capable of signaling if appropriately activated. Such knowledge is often laboriously obtained, and for almost all oGPCRs, this kind of information is not yet available. This technology can also be used to develop inverse agonist as well as agonist sensitive high throughput assays for oGPCRs. The veracity of this approach is demonstrated, using a number of known GPCRs. The likely signaling pathways of the GPR3, GPR12, GPR19, GPR21, and HG55 oGPCRs are shown, and a high throughput assay for GPR26 receptors developed. The methods outlined here for elucidation of the signal transduction pathways for oGPCRs and development of functional assays should speed up the process of identification of ligands for this potentially therapeutically useful group of receptors.


Assuntos
Receptores Acoplados a Proteínas G/fisiologia , Transdução de Sinais/fisiologia , Animais , Protocolos de Quimioterapia Combinada Antineoplásica , Sinalização do Cálcio/fisiologia , Linhagem Celular , Cricetinae , Ciclofosfamida , Doxorrubicina , Indústria Farmacêutica/métodos , Fluorescência , Genes Reporter , Proteínas de Fluorescência Verde , Rim/citologia , Proteínas Luminescentes , Proteínas de Membrana/metabolismo , Proteínas do Tecido Nervoso , Receptor 5-HT2A de Serotonina/fisiologia , Receptores de Dopamina D2 , Receptores Acoplados a Proteínas G/química , Receptores Acoplados a Proteínas G/efeitos dos fármacos , Receptores Acoplados a Proteínas G/metabolismo , Receptores de Leucotrienos/metabolismo , Receptores de Neurotransmissores/metabolismo , Receptores de Serotonina/fisiologia , Transcrição Gênica/fisiologia , Transfecção/métodos , Vincristina
14.
J Comput Aided Mol Des ; 16(11): 841-53, 2002 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-12825797

RESUMO

Some key concerns raised by molecular modeling and computational simulation of functional mechanisms for membrane proteins are discussed and illustrated for members of the family of G protein coupled receptors (GPCRs). Of particular importance are issues related to the modeling and computational treatment of loop regions. These are demonstrated here with results from different levels of computational simulations applied to the structures of rhodopsin and a model of the 5-HT2A serotonin receptor, 5-HT2AR. First, comparative Molecular Dynamics (MD) simulations are reported for rhodopsin in vacuum and embedded in an explicit representation of the membrane and water environment. It is shown that in spite of a partial accounting of solvent screening effects by neutralization of charged side chains, vacuum MD simulations can lead to severe distortions of the loop structures. The primary source of the distortion appears to be formation of artifactual H-bonds, as has been repeatedly observed in vacuum simulations. To address such shortcomings, a recently proposed approach that has been developed for calculating the structure of segments that connect elements of secondary structure with known coordinates, is applied to 5-HT2AR to obtain an initial representation of the loops connecting the transmembrane (TM) helices. The approach consists of a simulated annealing combined with biased scaled collective variables Monte Carlo technique, and is applied to loops connecting the TM segments on both the extra-cellular and the cytoplasmic sides of the receptor. Although this initial calculation treats the loops as independent structural entities, the final structure exhibits a number of interloop interactions that may have functional significance. Finally, it is shown here that in the case where a given loop from two different GPCRs (here rhodopsin and 5-HT2AR) has approximately the same length and some degree of sequence identity, the fold adopted by the loops can be similar. Thus, in such special cases homology modeling might be used to obtain initial structures of these loops. Notably, however, all other loops in these two receptors appear to be very different in sequence and structure, so that their conformations can be found reliably only by ab initio, energy based methods and not by homology modeling.


Assuntos
Receptores Acoplados a Proteínas G/química , Algoritmos , Sequência de Aminoácidos , Simulação por Computador , Membranas Artificiais , Modelos Moleculares , Método de Monte Carlo , Conformação Proteica , Estrutura Terciária de Proteína , Receptor 5-HT2A de Serotonina/química , Receptor 5-HT2A de Serotonina/genética , Rodopsina/química , Rodopsina/genética , Homologia de Sequência de Aminoácidos , Termodinâmica , Vácuo , Água
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