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1.

HybridDBRpred: improved sequence-based prediction of DNA-binding amino acids using annotations from structured complexes and disordered proteins.

Zhang, Jian; Basu, Sushmita; Kurgan, Lukasz.

Nucleic Acids Res ; 52(2): e10, 2024 Jan 25.

Artículo en Inglés | MEDLINE | ID: mdl-38048333

2.

DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options.

Basu, Sushmita; Zhao, Bi; Biró, Bálint; Faraggi, Eshel; Gsponer, Jörg; Hu, Gang; Kloczkowski, Andrzej; Malhis, Nawar; Mirdita, Milot; Söding, Johannes; Steinegger, Martin; Wang, Duolin; Wang, Kui; Xu, Dong; Zhang, Jian; Kurgan, Lukasz.

Nucleic Acids Res ; 52(D1): D426-D433, 2024 Jan 05.

Artículo en Inglés | MEDLINE | ID: mdl-37933852

3.

DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction.

Basu, Sushmita; Gsponer, Jörg; Kurgan, Lukasz.

Nucleic Acids Res ; 51(W1): W141-W147, 2023 07 05.

Artículo en Inglés | MEDLINE | ID: mdl-37140058

4.

Real-time Observation of Macroscopic Helical Morphologies under Optical Microscope: A Curious Case of π-π Stacking Driven Molecular Self-assembly of an Organic Gelator Devoid of Hydrogen Bonding.

Bera, Sourabh; Basu, Sushmita; Jana, Biman; Dastidar, Parthasarathi.

Angew Chem Int Ed Engl ; 62(7): e202216447, 2023 Feb 06.

Artículo en Inglés | MEDLINE | ID: mdl-36479962

5.

Conservation and coevolution determine evolvability of different classes of disordered residues in human intrinsically disordered proteins.

Basu, Sushmita; Bahadur, Ranjit Prasad.

Proteins ; 90(3): 632-644, 2022 03.

Artículo en Inglés | MEDLINE | ID: mdl-34626492

6.

Unusual RNA binding of FUS RRM studied by molecular dynamics simulation and enhanced sampling method.

Basu, Sushmita; Alagar, Suresh; Bahadur, Ranjit Prasad.

Biophys J ; 120(9): 1765-1776, 2021 05 04.

Artículo en Inglés | MEDLINE | ID: mdl-33705755

7.

Do sequence neighbours of intrinsically disordered regions promote structural flexibility in intrinsically disordered proteins?

Basu, Sushmita; Bahadur, Ranjit Prasad.

J Struct Biol ; 209(2): 107428, 2020 02 01.

Artículo en Inglés | MEDLINE | ID: mdl-31756456

8.

A structural perspective of RNA recognition by intrinsically disordered proteins.

Basu, Sushmita; Bahadur, Ranjit Prasad.

Cell Mol Life Sci ; 73(21): 4075-84, 2016 11.

Artículo en Inglés | MEDLINE | ID: mdl-27229125

9.

Taxonomy-specific assessment of intrinsic disorder predictions at residue and region levels in higher eukaryotes, protists, archaea, bacteria and viruses.

Basu, Sushmita; Kurgan, Lukasz.

Comput Struct Biotechnol J ; 23: 1968-1977, 2024 Dec.

Artículo en Inglés | MEDLINE | ID: mdl-38765610

10.

Hyperinsulinemic State and Hypokalemic Quadriparesis in Tropical Fever: Is There a Link?

Saha, Amitabha; Talapatra, Arjun; Basu, Sushmita; Sarkar, Souvik; Sarkar, Sourav.

Cureus ; 16(4): e57739, 2024 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-38716013

11.

An international prospective study of INICC analyzing the incidence and risk factors for catheter-associated urinary tract infections in 235 ICUs across 8 Asian Countries.

Rosenthal, Victor D; Yin, Ruijie; Abbo, Lilian M; Lee, Brandon H; Rodrigues, Camilla; Myatra, Sheila N; Divatia, Jigeeshu V; Kharbanda, Mohit; Nag, Bikas; Rajhans, Prasad; Shingte, Vasudha; Mehta, Yatin; Sarma, Smita; Todi, Subhash K; Bhattacharyya, Mahuya; Basu, Sushmita; Sahu, Suneeta; Mishra, Shakti B; Samal, Samir; Chawla, Rajesh; Jain, Aakanksha C; Nair, Pravin K; Kalapala, Durga; Arjun, Rajalakshmi; Singla, Deepak; Sandhu, Kavita; Badyal, Binesh; Palaniswamy, Vijayanand; Bhakta, Arpita; Gan, Chin S; Mohd-Basri, Mat N; Lai, Yin H; Tai, Chian-Wern; Lee, Pei-Chuen; Bat-Erdene, Ider; Begzjav, Tsolmon; Acharya, Subhash P; Dongol, Reshma; Ikram, Aamer; Tumu, Nellie; Tao, Lili; Jin, Zhilin.

Am J Infect Control ; 52(1): 54-60, 2024 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-37499758

12.

Incidence and risk factors for catheter-associated urinary tract infection in 623 intensive care units throughout 37 Asian, African, Eastern European, Latin American, and Middle Eastern nations: A multinational prospective research of INICC.

Rosenthal, Victor Daniel; Yin, Ruijie; Brown, Eric Christopher; Lee, Brandon Hochahn; Rodrigues, Camilla; Myatra, Sheila Nainan; Kharbanda, Mohit; Rajhans, Prasad; Mehta, Yatin; Todi, Subhash Kumar; Basu, Sushmita; Sahu, Suneeta; Mishra, Shakti Bedanta; Chawla, Rajesh; Nair, Pravin K; Arjun, Rajalakshmi; Singla, Deepak; Sandhu, Kavita; Palaniswamy, Vijayanand; Bhakta, Arpita; Nor, Mohd-Basri Mat; Chian-Wern, Tai; Bat-Erdene, Ider; Acharya, Subhash P; Ikram, Aamer; Tumu, Nellie; Tao, Lili; Alvarez, Gustavo Andres; Valderrama-Beltran, Sandra Liliana; Jiménez-Alvarez, Luisa Fernanda; Henao-Rodas, Claudia Milena; Gomez, Katherine; Aguilar-Moreno, Lina Alejandra; Cano-Medina, Yuliana Andrea; Zuniga-Chavarria, Maria Adelia; Aguirre-Avalos, Guadalupe; Sassoe-Gonzalez, Alejandro; Aleman-Bocanegra, Mary Cruz; Hernandez-Chena, Blanca Estela; Villegas-Mota, Maria Isabel; Aguilar-de-Moros, Daisy; Castañeda-Sabogal, Alex; Medeiros, Eduardo Alexandrino; Dueñas, Lourdes; Carreazo, Nilton Yhuri; Salgado, Estuardo; Abdulaziz-Alkhawaja, Safaa; Agha, Hala Mounir; El-Kholy, Amani Ali; Daboor, Mohammad Abdellatif.

Infect Control Hosp Epidemiol ; 45(5): 567-575, 2024 May.

Artículo en Inglés | MEDLINE | ID: mdl-38173347

13.

Computational prediction of disordered binding regions.

Basu, Sushmita; Kihara, Daisuke; Kurgan, Lukasz.

Comput Struct Biotechnol J ; 21: 1487-1497, 2023.

Artículo en Inglés | MEDLINE | ID: mdl-36851914

14.

CoMemMoRFPred: Sequence-based Prediction of MemMoRFs by Combining Predictors of Intrinsic Disorder, MoRFs and Disordered Lipid-binding Regions.

Basu, Sushmita; Hegedus, Tamás; Kurgan, Lukasz.

J Mol Biol ; 435(21): 168272, 2023 Nov 01.

Artículo en Inglés | MEDLINE | ID: mdl-37709009

15.

qNABpredict: Quick, accurate, and taxonomy-aware sequence-based prediction of content of nucleic acid binding amino acids.

Wu, Zhonghua; Basu, Sushmita; Wu, Xuantai; Kurgan, Lukasz.

Protein Sci ; 32(1): e4544, 2023 01.

Artículo en Inglés | MEDLINE | ID: mdl-36519304

16.

Treatment Outcome with High versus low-to-moderate Dosing of Corticosteroids in Early vis-a-vis Late-onset Hypoxic Cases of COVID-19: A Multicentric Retrospective Cohort Study.

Saha, Arpit Kumar; Das, Suvajit; Biswas, Daliya; Sain, Baijaeek; Mitra, Mrinmoy; Chakraborty, Ritam; Basu, Sushmita; Shamim, Shelley; Mukherjee, Avik; Ghosh, Debajyoti; Biswas, Sujash; Kumar, Simit; Gowsami, D N; Todi, S K.

IJID Reg ; 7: 31-42, 2023 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-36164344

17.

Impaired nuclear transport induced by juvenile ALS causing P525L mutation in NLS domain of FUS: A molecular mechanistic study.

Basu, Sushmita; Rajendra, K C; Alagar, Suresh; Bahadur, Ranjit Prasad.

Biochim Biophys Acta Proteins Proteom ; 1870(4): 140766, 2022 04 01.

Artículo en Inglés | MEDLINE | ID: mdl-35134572

18.

Molecular mechanism of the enhanced viral fitness contributed by secondary mutations in the hemagglutinin protein of oseltamivir resistant H1N1 influenza viruses: modeling studies of antibody and receptor binding.

Behera, Abhisek Kumar; Basu, Sushmita; Cherian, Sarah S.

Gene ; 557(1): 19-27, 2015 Feb 15.

Artículo en Inglés | MEDLINE | ID: mdl-25479009

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HybridDBRpred: improved sequence-based prediction of DNA-binding amino acids using annotations from structured complexes and disordered proteins.

DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options.

DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction.

Real-time Observation of Macroscopic Helical Morphologies under Optical Microscope: A Curious Case of π-π Stacking Driven Molecular Self-assembly of an Organic Gelator Devoid of Hydrogen Bonding.

Conservation and coevolution determine evolvability of different classes of disordered residues in human intrinsically disordered proteins.

Unusual RNA binding of FUS RRM studied by molecular dynamics simulation and enhanced sampling method.

Do sequence neighbours of intrinsically disordered regions promote structural flexibility in intrinsically disordered proteins?

A structural perspective of RNA recognition by intrinsically disordered proteins.

Taxonomy-specific assessment of intrinsic disorder predictions at residue and region levels in higher eukaryotes, protists, archaea, bacteria and viruses.

Hyperinsulinemic State and Hypokalemic Quadriparesis in Tropical Fever: Is There a Link?

An international prospective study of INICC analyzing the incidence and risk factors for catheter-associated urinary tract infections in 235 ICUs across 8 Asian Countries.

Incidence and risk factors for catheter-associated urinary tract infection in 623 intensive care units throughout 37 Asian, African, Eastern European, Latin American, and Middle Eastern nations: A multinational prospective research of INICC.

Computational prediction of disordered binding regions.

CoMemMoRFPred: Sequence-based Prediction of MemMoRFs by Combining Predictors of Intrinsic Disorder, MoRFs and Disordered Lipid-binding Regions.

qNABpredict: Quick, accurate, and taxonomy-aware sequence-based prediction of content of nucleic acid binding amino acids.

Treatment Outcome with High versus low-to-moderate Dosing of Corticosteroids in Early vis-a-vis Late-onset Hypoxic Cases of COVID-19: A Multicentric Retrospective Cohort Study.

Impaired nuclear transport induced by juvenile ALS causing P525L mutation in NLS domain of FUS: A molecular mechanistic study.

Molecular mechanism of the enhanced viral fitness contributed by secondary mutations in the hemagglutinin protein of oseltamivir resistant H1N1 influenza viruses: modeling studies of antibody and receptor binding.