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1.
Pre-analytical effects on whole transcriptome and targeted RNA sequencing analysis in cytology: The effects of prolonged time in storage of effusion specimens prior to preservation.
Cytopathology
; 34(6): 551-561, 2023 Nov.
Artículo
en Inglés
| MEDLINE | ID: mdl-37712171
2.
Targeted RNAseq assay incorporating unique molecular identifiers for improved quantification of gene expression signatures and transcribed mutation fraction in fixed tumor samples.
BMC Cancer
; 21(1): 114, 2021 Feb 04.
Artículo
en Inglés
| MEDLINE | ID: mdl-33541297
3.
Analysis of the Applicability of microRNAs in Peripheral Blood Leukocytes as Biomarkers of Sensitivity and Exposure to Fractionated Radiotherapy towards Breast Cancer.
Int J Mol Sci
; 22(16)2021 Aug 13.
Artículo
en Inglés
| MEDLINE | ID: mdl-34445424
4.
BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm.
Bioinformatics
; 35(11): 1885-1892, 2019 06 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-30357412
5.
Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms.
Bioinformatics
; 35(24): 5146-5154, 2019 12 15.
Artículo
en Inglés
| MEDLINE | ID: mdl-31165139
6.
Technical Validity of a Customized Assay of Sensitivity to Endocrine Therapy Using Sections from Fixed Breast Cancer Tissue.
Clin Chem
; 66(7): 934-945, 2020 07 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-32613237
7.
The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues.
BMC Cancer
; 19(1): 1189, 2019 Dec 05.
Artículo
en Inglés
| MEDLINE | ID: mdl-31805884
8.
Lung cancer survival and comorbidities in lung cancer screening participants of the Gdansk screening cohort.
Eur J Public Health
; 29(6): 1114-1117, 2019 12 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-31004154
9.
Ranking metrics in gene set enrichment analysis: do they matter?
BMC Bioinformatics
; 18(1): 256, 2017 May 12.
Artículo
en Inglés
| MEDLINE | ID: mdl-28499413
10.
Radiation-induced changes in serum lipidome of head and neck cancer patients.
Int J Mol Sci
; 15(4): 6609-24, 2014 Apr 17.
Artículo
en Inglés
| MEDLINE | ID: mdl-24747595
11.
miR-122 and miR-21 are Stable Components of miRNA Signatures of Early Lung Cancer after Validation in Three Independent Cohorts.
J Mol Diagn
; 26(1): 37-48, 2024 Jan.
Artículo
en Inglés
| MEDLINE | ID: mdl-37865291
12.
Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition.
BMC Bioinformatics
; 14: 101, 2013 Mar 20.
Artículo
en Inglés
| MEDLINE | ID: mdl-23510016
13.
Sources of high variance between probe signals in Affymetrix short oligonucleotide microarrays.
Sensors (Basel)
; 14(1): 532-48, 2013 Dec 31.
Artículo
en Inglés
| MEDLINE | ID: mdl-24385030
14.
Molecular testing opportunities on cytology effusion specimens: the pre-analytic effects of various body fluid cytology preparation methods on RNA extraction quality and targeted sequencing.
J Am Soc Cytopathol
; 12(1): 10-19, 2023.
Artículo
en Inglés
| MEDLINE | ID: mdl-36270909
15.
Assessment of stained direct cytology smears of breast cancer for whole transcriptome and targeted messenger RNA sequencing.
Cancer Cytopathol
; 131(5): 289-299, 2023 05.
Artículo
en Inglés
| MEDLINE | ID: mdl-36650408
16.
Evaluation of zero counts to better understand the discrepancies between bulk and single-cell RNA-Seq platforms.
Comput Struct Biotechnol J
; 21: 4663-4674, 2023.
Artículo
en Inglés
| MEDLINE | ID: mdl-37841335
17.
Short- and long-term effects of radiation exposure at low dose and low dose rate in normal human VH10 fibroblasts.
Front Public Health
; 11: 1297942, 2023.
Artículo
en Inglés
| MEDLINE | ID: mdl-38162630
18.
Combining Low-Dose Computer-Tomography-Based Radiomics and Serum Metabolomics for Diagnosis of Malignant Nodules in Participants of Lung Cancer Screening Studies.
Biomolecules
; 14(1)2023 Dec 28.
Artículo
en Inglés
| MEDLINE | ID: mdl-38254644
19.
POLCOVID: a multicenter multiclass chest X-ray database (Poland, 2020-2021).
Sci Data
; 10(1): 348, 2023 06 02.
Artículo
en Inglés
| MEDLINE | ID: mdl-37268643
20.
Pathological changes or technical artefacts? The problem of the heterogenous databases in COVID-19 CXR image analysis.
Comput Methods Programs Biomed
; 240: 107684, 2023 Oct.
Artículo
en Inglés
| MEDLINE | ID: mdl-37356354