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1.

Tissue adaptation and clonal segregation of human memory T cells in barrier sites.

Poon, Maya M L; Caron, Daniel P; Wang, Zicheng; Wells, Steven B; Chen, David; Meng, Wenzhao; Szabo, Peter A; Lam, Nora; Kubota, Masaru; Matsumoto, Rei; Rahman, Adeeb; Luning Prak, Eline T; Shen, Yufeng; Sims, Peter A; Farber, Donna L.

Nat Immunol ; 24(2): 309-319, 2023 02.

Artículo en Inglés | MEDLINE | ID: mdl-36658238

2.

Induction of bronchus-associated lymphoid tissue is an early life adaptation for promoting human B cell immunity.

Matsumoto, Rei; Gray, Joshua; Rybkina, Ksenia; Oppenheimer, Hanna; Levy, Lior; Friedman, Lilach M; Khamaisi, Muhammad; Meng, Wenzhao; Rosenfeld, Aaron M; Guyer, Rebecca S; Bradley, Marissa C; Chen, David; Atkinson, Mark A; Brusko, Todd M; Brusko, Maigan; Connors, Thomas J; Luning Prak, Eline T; Hershberg, Uri; Sims, Peter A; Hertz, Tomer; Farber, Donna L.

Nat Immunol ; 24(8): 1370-1381, 2023 08.

Artículo en Inglés | MEDLINE | ID: mdl-37460638

3.

Site-specific development and progressive maturation of human tissue-resident memory T cells over infancy and childhood.

Connors, Thomas J; Matsumoto, Rei; Verma, Shivali; Szabo, Peter A; Guyer, Rebecca; Gray, Joshua; Wang, Zicheng; Thapa, Puspa; Dogra, Pranay; Poon, Maya M L; Rybkina, Ksenia; Bradley, Marissa C; Idzikowski, Emma; McNichols, James; Kubota, Masaru; Pethe, Kalpana; Shen, Yufeng; Atkinson, Mark A; Brusko, Maigan; Brusko, Todd M; Yates, Andrew J; Sims, Peter A; Farber, Donna L.

Immunity ; 56(8): 1894-1909.e5, 2023 08 08.

Artículo en Inglés | MEDLINE | ID: mdl-37421943

4.

Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19.

Szabo, Peter A; Dogra, Pranay; Gray, Joshua I; Wells, Steven B; Connors, Thomas J; Weisberg, Stuart P; Krupska, Izabela; Matsumoto, Rei; Poon, Maya M L; Idzikowski, Emma; Morris, Sinead E; Pasin, Chloé; Yates, Andrew J; Ku, Amy; Chait, Michael; Davis-Porada, Julia; Guo, Xinzheng V; Zhou, Jing; Steinle, Matthew; Mackay, Sean; Saqi, Anjali; Baldwin, Matthew R; Sims, Peter A; Farber, Donna L.

Immunity ; 54(4): 797-814.e6, 2021 04 13.

Artículo en Inglés | MEDLINE | ID: mdl-33765436

5.

Human memory T cells with a naive phenotype accumulate with aging and respond to persistent viruses.

Pulko, Vesna; Davies, John S; Martinez, Carmine; Lanteri, Marion C; Busch, Michael P; Diamond, Michael S; Knox, Kenneth; Bush, Erin C; Sims, Peter A; Sinari, Shripad; Billheimer, Dean; Haddad, Elias K; Murray, Kristy O; Wertheimer, Anne M; Nikolich-Zugich, Janko.

Nat Immunol ; 17(8): 966-75, 2016 08.

Artículo en Inglés | MEDLINE | ID: mdl-27270402

6.

The harsh microenvironment in early breast cancer selects for a Warburg phenotype.

Damaghi, Mehdi; West, Jeffrey; Robertson-Tessi, Mark; Xu, Liping; Ferrall-Fairbanks, Meghan C; Stewart, Paul A; Persi, Erez; Fridley, Brooke L; Altrock, Philipp M; Gatenby, Robert A; Sims, Peter A; Anderson, Alexander R A; Gillies, Robert J.

Proc Natl Acad Sci U S A ; 118(3)2021 01 19.

Artículo en Inglés | MEDLINE | ID: mdl-33452133

7.

Conserved and cell type-specific transcriptional responses to IFN-Î³ in the ventral midbrain.

Hobson, Benjamin D; Stanley, Adrien T; De Los Santos, Mark B; Culbertson, Bruce; Mosharov, Eugene V; Sims, Peter A; Sulzer, David.

Brain Behav Immun ; 111: 277-291, 2023 07.

Artículo en Inglés | MEDLINE | ID: mdl-37100211

8.

Chronic convection-enhanced delivery of topotecan for patients with recurrent glioblastoma: a first-in-patient, single-centre, single-arm, phase 1b trial.

Spinazzi, Eleonora F; Argenziano, Michael G; Upadhyayula, Pavan S; Banu, Matei A; Neira, Justin A; Higgins, Dominique M O; Wu, Peter B; Pereira, Brianna; Mahajan, Aayushi; Humala, Nelson; Al-Dalahmah, Osama; Zhao, Wenting; Save, Akshay V; Gill, Brian J A; Boyett, Deborah M; Marie, Tamara; Furnari, Julia L; Sudhakar, Tejaswi D; Stopka, Sylwia A; Regan, Michael S; Catania, Vanessa; Good, Laura; Zacharoulis, Stergios; Behl, Meenu; Petridis, Petros; Jambawalikar, Sachin; Mintz, Akiva; Lignelli, Angela; Agar, Nathalie Y R; Sims, Peter A; Welch, Mary R; Lassman, Andrew B; Iwamoto, Fabio M; D'Amico, Randy S; Grinband, Jack; Canoll, Peter; Bruce, Jeffrey N.

Lancet Oncol ; 23(11): 1409-1418, 2022 11.

Artículo en Inglés | MEDLINE | ID: mdl-36243020

9.

Adult enteric Dclk1-positive glial and neuronal cells reveal distinct responses to acute intestinal injury.

Middelhoff, Moritz; Valenti, Giovanni; Tomassoni, Lorenzo; Ochiai, Yosuke; Belin, Bryana; Takahashi, Ryota; Malagola, Ermanno; Nienhüser, Henrik; Finlayson, Michael; Hayakawa, Yoku; Zamechek, Leah B; Renz, Bernhard W; Westphalen, C Benedikt; Quante, Michael; Margolis, Kara G; Sims, Peter A; Laise, Pasquale; Califano, Andrea; Rao, Meenakshi; Gershon, Michael D; Wang, Timothy C.

Am J Physiol Gastrointest Liver Physiol ; 322(6): G583-G597, 2022 06 01.

Artículo en Inglés | MEDLINE | ID: mdl-35319286

10.

Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human.

Pan, Huize; Xue, Chenyi; Auerbach, Benjamin J; Fan, Jiaxin; Bashore, Alexander C; Cui, Jian; Yang, Dina Y; Trignano, Sarah B; Liu, Wen; Shi, Jianting; Ihuegbu, Chinyere O; Bush, Erin C; Worley, Jeremy; Vlahos, Lukas; Laise, Pasquale; Solomon, Robert A; Connolly, Edward S; Califano, Andrea; Sims, Peter A; Zhang, Hanrui; Li, Mingyao; Reilly, Muredach P.

Circulation ; 142(21): 2060-2075, 2020 11 24.

Artículo en Inglés | MEDLINE | ID: mdl-32962412

11.

Cellular origins and lineage relationships of the intestinal epithelium.

Capdevila, Claudia; Trifas, Maria; Miller, Jonathan; Anderson, Troy; Sims, Peter A; Yan, Kelley S.

Am J Physiol Gastrointest Liver Physiol ; 321(4): G413-G425, 2021 10 01.

Artículo en Inglés | MEDLINE | ID: mdl-34431400

12.

De novo gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization.

Levitin, Hanna Mendes; Yuan, Jinzhou; Cheng, Yim Ling; Ruiz, Francisco Jr; Bush, Erin C; Bruce, Jeffrey N; Canoll, Peter; Iavarone, Antonio; Lasorella, Anna; Blei, David M; Sims, Peter A.

Mol Syst Biol ; 15(2): e8557, 2019 02 22.

Artículo en Inglés | MEDLINE | ID: mdl-30796088

13.

Contextualizing the pathology in the essential tremor cerebellar cortex: a patholog-omics approach.

Louis, Elan D; Kerridge, Chloë A; Chatterjee, Debotri; Martuscello, Regina T; Diaz, Daniel Trujillo; Koeppen, Arnulf H; Kuo, Sheng-Han; Vonsattel, Jean-Paul G; Sims, Peter A; Faust, Phyllis L.

Acta Neuropathol ; 138(5): 859-876, 2019 11.

Artículo en Inglés | MEDLINE | ID: mdl-31317229

14.

Diversity and divergence of the glioma-infiltrating T-cell receptor repertoire.

Sims, Jennifer S; Grinshpun, Boris; Feng, Yaping; Ung, Timothy H; Neira, Justin A; Samanamud, Jorge L; Canoll, Peter; Shen, Yufeng; Sims, Peter A; Bruce, Jeffrey N.

Proc Natl Acad Sci U S A ; 113(25): E3529-37, 2016 06 21.

Artículo en Inglés | MEDLINE | ID: mdl-27261081

15.

Loss of Activin Receptor Type 1B Accelerates Development of Intraductal Papillary Mucinous Neoplasms in Mice With Activated KRAS.

Qiu, Wanglong; Tang, Sophia M; Lee, Sohyae; Turk, Andrew T; Sireci, Anthony N; Qiu, Anne; Rose, Christian; Xie, Chuangao; Kitajewski, Jan; Wen, Hui-Ju; Crawford, Howard C; Sims, Peter A; Hruban, Ralph H; Remotti, Helen E; Su, Gloria H.

Gastroenterology ; 150(1): 218-228.e12, 2016 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-26408346

16.

Climbing fiber-Purkinje cell synaptic pathology in tremor and cerebellar degenerative diseases.

Kuo, Sheng-Han; Lin, Chi-Ying; Wang, Jie; Sims, Peter A; Pan, Ming-Kai; Liou, Jyun-You; Lee, Danielle; Tate, William J; Kelly, Geoffrey C; Louis, Elan D; Faust, Phyllis L.

Acta Neuropathol ; 133(1): 121-138, 2017 01.

Artículo en Inglés | MEDLINE | ID: mdl-27704282

17.

MRI-localized biopsies reveal subtype-specific differences in molecular and cellular composition at the margins of glioblastoma.

Gill, Brian J; Pisapia, David J; Malone, Hani R; Goldstein, Hannah; Lei, Liang; Sonabend, Adam; Yun, Jonathan; Samanamud, Jorge; Sims, Jennifer S; Banu, Matei; Dovas, Athanassios; Teich, Andrew F; Sheth, Sameer A; McKhann, Guy M; Sisti, Michael B; Bruce, Jeffrey N; Sims, Peter A; Canoll, Peter.

Proc Natl Acad Sci U S A ; 111(34): 12550-5, 2014 Aug 26.

Artículo en Inglés | MEDLINE | ID: mdl-25114226

18.

Ribosome profiling reveals a cell-type-specific translational landscape in brain tumors.

Gonzalez, Christian; Sims, Jennifer S; Hornstein, Nicholas; Mela, Angeliki; Garcia, Franklin; Lei, Liang; Gass, David A; Amendolara, Benjamin; Bruce, Jeffrey N; Canoll, Peter; Sims, Peter A.

J Neurosci ; 34(33): 10924-36, 2014 Aug 13.

Artículo en Inglés | MEDLINE | ID: mdl-25122893

19.

SPOTs fill a major gap in RNA quantification.

Yuan, Jinzhou; Sims, Peter A.

Nat Methods ; 14(12): 1137-1138, 2017 11 30.

Artículo en Inglés | MEDLINE | ID: mdl-29190269

20.

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.

Shiroguchi, Katsuyuki; Jia, Tony Z; Sims, Peter A; Xie, X Sunney.

Proc Natl Acad Sci U S A ; 109(4): 1347-52, 2012 Jan 24.

Artículo en Inglés | MEDLINE | ID: mdl-22232676

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