Detalhe da pesquisa
1.
Accurate reconstruction of bacterial pan- and core genomes with PEPPAN.
Genome Res
; 30(11): 1667-1679, 2020 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-33055096
2.
Genome Reduction Is Associated with Bacterial Pathogenicity across Different Scales of Temporal and Ecological Divergence.
Mol Biol Evol
; 38(4): 1570-1579, 2021 04 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-33313861
3.
HierCC: a multi-level clustering scheme for population assignments based on core genome MLST.
Bioinformatics
; 37(20): 3645-3646, 2021 Oct 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-33823553
4.
EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations.
Philos Trans R Soc Lond B Biol Sci
; 377(1861): 20210240, 2022 10 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35989609
5.
Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study.
Microb Genom
; 7(11)2021 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-34812717
6.
The McDonald-Kreitman test and slightly deleterious mutations.
Mol Biol Evol
; 25(6): 1007-15, 2008 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-18195052
7.
Severe infections emerge from commensal bacteria by adaptive evolution.
Elife
; 62017 12 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-29256859
8.
Where next for the reproducibility agenda in computational biology?
BMC Syst Biol
; 10(1): 52, 2016 07 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-27422148
9.
Identifying lineage effects when controlling for population structure improves power in bacterial association studies.
Nat Microbiol
; 1: 16041, 2016 Apr 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-27572646
10.
Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.
Nat Commun
; 5: 3956, 2014 May 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-24853639
11.
MicroRNA expression profiles in avian haemopoietic cells.
Front Genet
; 4: 153, 2013.
Artigo
em Inglês
| MEDLINE | ID: mdl-23967013
12.
The other side of the nearly neutral theory, evidence of slightly advantageous back-mutations.
Proc Natl Acad Sci U S A
; 104(43): 16992-7, 2007 Oct 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-17940029
13.
The rate of adaptive evolution in enteric bacteria.
Mol Biol Evol
; 23(7): 1348-56, 2006 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-16621913