Detalhe da pesquisa
1.
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe.
Genome Res
; 33(1): 129-140, 2023 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36669850
2.
Multidrug-resistant E. coli encoding high genetic diversity in carbohydrate metabolism genes displace commensal E. coli from the intestinal tract.
PLoS Biol
; 21(10): e3002329, 2023 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-37847672
3.
The effect of recombination on the evolution of a population of Neisseria meningitidis.
Genome Res
; 31(7): 1258-1268, 2021 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-34108268
4.
Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages.
PLoS Genet
; 17(9): e1009829, 2021 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-34582435
5.
Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment.
Mol Biol Evol
; 39(1)2022 01 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-34662416
6.
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae.
PLoS Biol
; 18(10): e3000878, 2020 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-33091022
7.
Identification of multiplicatively acting modulatory mutational signatures in cancer.
BMC Bioinformatics
; 23(1): 522, 2022 Dec 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-36474143
8.
Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment.
Genome Res
; 29(4): 626-634, 2019 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-30898881
9.
Fast and flexible bacterial genomic epidemiology with PopPUNK.
Genome Res
; 29(2): 304-316, 2019 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-30679308
10.
Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting.
BMC Bioinformatics
; 22(1): 164, 2021 Mar 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-33773584
11.
The binding mechanism of the virulence factor Streptococcus suis adhesin P subtype to globotetraosylceramide is associated with systemic disease.
J Biol Chem
; 295(42): 14305-14324, 2020 10 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-32796033
12.
Fine-Scale Haplotype Structure Reveals Strong Signatures of Positive Selection in a Recombining Bacterial Pathogen.
Mol Biol Evol
; 37(2): 417-428, 2020 02 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31589312
13.
gplas: a comprehensive tool for plasmid analysis using short-read graphs.
Bioinformatics
; 36(12): 3874-3876, 2020 06 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32271863
14.
Fast hierarchical Bayesian analysis of population structure.
Nucleic Acids Res
; 47(11): 5539-5549, 2019 06 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-31076776
15.
Genome-wide epistasis and co-selection study using mutual information.
Nucleic Acids Res
; 47(18): e112, 2019 10 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-31361894
16.
Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies.
BMC Genomics
; 21(1): 606, 2020 Sep 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-32883205
17.
Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131.
Genome Res
; 2017 Jul 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-28720578
18.
Strain Variability of Listeria monocytogenes under NaCl Stress Elucidated by a High-Throughput Microbial Growth Data Assembly and Analysis Protocol.
Appl Environ Microbiol
; 86(6)2020 03 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-31900307
19.
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis.
PLoS Genet
; 13(2): e1006508, 2017 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-28207813
20.
The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease.
Clin Infect Dis
; 68(1): 61-69, 2019 01 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29788414