Pesquisa | Portal de Pesquisa da BVS Enfermagem

1.

Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks.

Rubin, Adam J; Parker, Kevin R; Satpathy, Ansuman T; Qi, Yanyan; Wu, Beijing; Ong, Alvin J; Mumbach, Maxwell R; Ji, Andrew L; Kim, Daniel S; Cho, Seung Woo; Zarnegar, Brian J; Greenleaf, William J; Chang, Howard Y; Khavari, Paul A.

Cell ; 176(1-2): 361-376.e17, 2019 01 10.

Artigo em Inglês | MEDLINE | ID: mdl-30580963

2.

Loci identified by a genome-wide association study of carotid artery stenosis in the eMERGE network.

Palmer, Melody R; Kim, Daniel S; Crosslin, David R; Stanaway, Ian B; Rosenthal, Elisabeth A; Carrell, David S; Cronkite, David J; Gordon, Adam; Du, Xiaomeng; Li, Yatong K; Williams, Marc S; Weng, Chunhua; Feng, Qiping; Li, Rongling; Pendergrass, Sarah A; Hakonarson, Hakon; Fasel, David; Sohn, Sunghwan; Sleiman, Patrick; Handelman, Samuel K; Speliotes, Elizabeth; Kullo, Iftikhar J; Larson, Eric B; Jarvik, Gail P.

Genet Epidemiol ; 45(1): 4-15, 2021 02.

Artigo em Inglês | MEDLINE | ID: mdl-32964493

3.

An Endoscopic and Histologic Study on Healing of Radiofrequency Ablation Wounds in Patients With Barrett's Esophagus.

Konda, Vani; Souza, Rhonda F; Dunbar, Kerry B; Mills, Jason C; Kim, Daniel S; Odze, Robert D; Spechler, Stuart J.

Am J Gastroenterol ; 117(10): 1583-1592, 2022 10 01.

Artigo em Inglês | MEDLINE | ID: mdl-35970814

4.

Timing of Resumption of Anticoagulation After Polypectomy and Frequency of Post-procedural Complications: A Post-hoc Analysis.

Chebaa, Benjamin R; Burgman, Brandon; Smith, Andrew D; Kim, Daniel S; Lunsford, Tisha; Mara, Miriam; Kundrotas, Leon; Dunbar, Kerry B; Spechler, Stuart J; Yi, S Stephen; Feagins, Linda A.

Dig Dis Sci ; 67(7): 3210-3219, 2022 07.

Artigo em Inglês | MEDLINE | ID: mdl-35028791

5.

Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts.

Nair, Surag; Kim, Daniel S; Perricone, Jacob; Kundaje, Anshul.

Bioinformatics ; 35(14): i108-i116, 2019 07 15.

Artigo em Inglês | MEDLINE | ID: mdl-31510655

6.

Morbidity and Mortality of Typhoid Intestinal Perforation Among Children in Sub-Saharan Africa 1995-2019: A Scoping Review.

Birkhold, Megan; Coulibaly, Yacaria; Coulibaly, Oumar; Dembélé, Philadelphie; Kim, Daniel S; Sow, Samba; Neuzil, Kathleen M.

World J Surg ; 44(9): 2892-2902, 2020 09.

Artigo em Inglês | MEDLINE | ID: mdl-32430740

7.

Association of exome sequences with plasma C-reactive protein levels in >9000 participants.

Schick, Ursula M; Auer, Paul L; Bis, Joshua C; Lin, Honghuang; Wei, Peng; Pankratz, Nathan; Lange, Leslie A; Brody, Jennifer; Stitziel, Nathan O; Kim, Daniel S; Carlson, Christopher S; Fornage, Myriam; Haessler, Jeffery; Hsu, Li; Jackson, Rebecca D; Kooperberg, Charles; Leal, Suzanne M; Psaty, Bruce M; Boerwinkle, Eric; Tracy, Russell; Ardissino, Diego; Shah, Svati; Willer, Cristen; Loos, Ruth; Melander, Olle; Mcpherson, Ruth; Hovingh, Kees; Reilly, Muredach; Watkins, Hugh; Girelli, Domenico; Fontanillas, Pierre; Chasman, Daniel I; Gabriel, Stacey B; Gibbs, Richard; Nickerson, Deborah A; Kathiresan, Sekar; Peters, Ulrike; Dupuis, Josée; Wilson, James G; Rich, Stephen S; Morrison, Alanna C; Benjamin, Emelia J; Gross, Myron D; Reiner, Alex P.

Hum Mol Genet ; 24(2): 559-71, 2015 Jan 15.

Artigo em Inglês | MEDLINE | ID: mdl-25187575

8.

Actionable, pathogenic incidental findings in 1,000 participants' exomes.

Dorschner, Michael O; Amendola, Laura M; Turner, Emily H; Robertson, Peggy D; Shirts, Brian H; Gallego, Carlos J; Bennett, Robin L; Jones, Kelly L; Tokita, Mari J; Bennett, James T; Kim, Jerry H; Rosenthal, Elisabeth A; Kim, Daniel S; Tabor, Holly K; Bamshad, Michael J; Motulsky, Arno G; Scott, C Ronald; Pritchard, Colin C; Walsh, Tom; Burke, Wylie; Raskind, Wendy H; Byers, Peter; Hisama, Fuki M; Nickerson, Deborah A; Jarvik, Gail P.

Am J Hum Genet ; 93(4): 631-40, 2013 Oct 03.

Artigo em Inglês | MEDLINE | ID: mdl-24055113

9.

A Hospital and Postdischarge Quality Improvement Intervention and Outcomes and Care for Patients With Heart Failure With Reduced Ejection Fraction.

Kim, Daniel S; Dau, Nhu Quyen; Peled, Harry.

JAMA ; 326(19): 1977, 2021 11 16.

Artigo em Inglês | MEDLINE | ID: mdl-34783843

10.

The relationship between diastolic blood pressure and coronary artery calcification is dependent on single nucleotide polymorphisms on chromosome 9p21.3.

Kim, Daniel S; Smith, Jennifer A; Bielak, Lawrence F; Wu, Chun-Yi; Sun, Yan V; Sheedy, Patrick F; Turner, Stephen T; Peyser, Patricia A; Kardia, Sharon L R.

BMC Med Genet ; 15: 89, 2014 Sep 04.

Artigo em Inglês | MEDLINE | ID: mdl-25185447

11.

Novel gene-by-environment interactions: APOB and NPC1L1 variants affect the relationship between dietary and total plasma cholesterol.

Kim, Daniel S; Burt, Amber A; Ranchalis, Jane E; Jarvik, Ella R; Rosenthal, Elisabeth A; Hatsukami, Thomas S; Furlong, Clement E; Jarvik, Gail P.

J Lipid Res ; 54(5): 1512-20, 2013 May.

Artigo em Inglês | MEDLINE | ID: mdl-23482652

12.

Novel common and rare genetic determinants of paraoxonase activity: FTO, SERPINA12, and ITGAL.

Kim, Daniel S; Burt, Amber A; Crosslin, David R; Robertson, Peggy D; Ranchalis, Jane E; Boyko, Edward J; Nickerson, Deborah A; Furlong, Clement E; Jarvik, Gail P.

J Lipid Res ; 54(2): 552-60, 2013 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-23160181

13.

An evaluation and adjustment method for natural proximal contacts of crowns using diamond dental strips: a case report.

Kim, Daniel S; Rothchild, John A; Suh, Kyu-Won.

Gen Dent ; 61(5): 60-3, 2013 Aug.

Artigo em Inglês | MEDLINE | ID: mdl-23928442

14.

ATAC-seq Data Processing.

Kim, Daniel S.

Methods Mol Biol ; 2611: 305-323, 2023.

Artigo em Inglês | MEDLINE | ID: mdl-36807076

15.

Deep Learning on Chromatin Accessibility.

Kim, Daniel S.

Methods Mol Biol ; 2611: 325-333, 2023.

Artigo em Inglês | MEDLINE | ID: mdl-36807077

16.

Measurement of proximal contact of single crowns to assess interproximal relief: A pilot study.

Kim, Daniel S; Lau, Le Na; Kim, Jong-Woong; Yeo, In-Sung Luke.

Heliyon ; 9(10): e20403, 2023 Oct.

Artigo em Inglês | MEDLINE | ID: mdl-37767497

17.

Single-Cell and Spatial Transcriptomic Analysis of Human Skin Delineates Intercellular Communication and Pathogenic Cells.

Thrane, Kim; Winge, Mårten C G; Wang, Hongyu; Chen, Larry; Guo, Margaret G; Andersson, Alma; Abalo, Xesús M; Yang, Xue; Kim, Daniel S; Longo, Sophia K; Soong, Brian Y; Meyers, Jordan M; Reynolds, David L; McGeever, Aaron; Demircioglu, Deniz; Hasson, Dan; Mirzazadeh, Reza; Rubin, Adam J; Bae, Gordon H; Karkanias, Jim; Rieger, Kerri; Lundeberg, Joakim; Ji, Andrew L.

J Invest Dermatol ; 143(11): 2177-2192.e13, 2023 11.

Artigo em Inglês | MEDLINE | ID: mdl-37142187

18.

The ENCODE Uniform Analysis Pipelines.

Hitz, Benjamin C; Jin-Wook, Lee; Jolanki, Otto; Kagda, Meenakshi S; Graham, Keenan; Sud, Paul; Gabdank, Idan; Strattan, J Seth; Sloan, Cricket A; Dreszer, Timothy; Rowe, Laurence D; Podduturi, Nikhil R; Malladi, Venkat S; Chan, Esther T; Davidson, Jean M; Ho, Marcus; Miyasato, Stuart; Simison, Matt; Tanaka, Forrest; Luo, Yunhai; Whaling, Ian; Hong, Eurie L; Lee, Brian T; Sandstrom, Richard; Rynes, Eric; Nelson, Jemma; Nishida, Andrew; Ingersoll, Alyssa; Buckley, Michael; Frerker, Mark; Kim, Daniel S; Boley, Nathan; Trout, Diane; Dobin, Alex; Rahmanian, Sorena; Wyman, Dana; Balderrama-Gutierrez, Gabriela; Reese, Fairlie; Durand, Neva C; Dudchenko, Olga; Weisz, David; Rao, Suhas S P; Blackburn, Alyssa; Gkountaroulis, Dimos; Sadr, Mahdi; Olshansky, Moshe; Eliaz, Yossi; Nguyen, Dat; Bochkov, Ivan; Shamim, Muhammad Saad.

bioRxiv ; 2023 Apr 06.

Artigo em Inglês | MEDLINE | ID: mdl-37066421

19.

The ENCODE Uniform Analysis Pipelines.

Hitz, Benjamin C; Lee, Jin-Wook; Jolanki, Otto; Kagda, Meenakshi S; Graham, Keenan; Sud, Paul; Gabdank, Idan; Strattan, J Seth; Sloan, Cricket A; Dreszer, Timothy; Rowe, Laurence D; Podduturi, Nikhil R; Malladi, Venkat S; Chan, Esther T; Davidson, Jean M; Ho, Marcus; Miyasato, Stuart; Simison, Matt; Tanaka, Forrest; Luo, Yunhai; Whaling, Ian; Hong, Eurie L; Lee, Brian T; Sandstrom, Richard; Rynes, Eric; Nelson, Jemma; Nishida, Andrew; Ingersoll, Alyssa; Buckley, Michael; Frerker, Mark; Kim, Daniel S; Boley, Nathan; Trout, Diane; Dobin, Alex; Rahmanian, Sorena; Wyman, Dana; Balderrama-Gutierrez, Gabriela; Reese, Fairlie; Durand, Neva C; Dudchenko, Olga; Weisz, David; Rao, Suhas S P; Blackburn, Alyssa; Gkountaroulis, Dimos; Sadr, Mahdi; Olshansky, Moshe; Eliaz, Yossi; Nguyen, Dat; Bochkov, Ivan; Shamim, Muhammad Saad.

Res Sq ; 2023 Jul 19.

Artigo em Inglês | MEDLINE | ID: mdl-37503119

20.

Dietary cholesterol increases paraoxonase 1 enzyme activity.

Kim, Daniel S; Burt, Amber A; Ranchalis, Jane E; Richter, Rebecca J; Marshall, Julieann K; Nakayama, Karen S; Jarvik, Ella R; Eintracht, Jason F; Rosenthal, Elisabeth A; Furlong, Clement E; Jarvik, Gail P.

J Lipid Res ; 53(11): 2450-8, 2012 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-22896672

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Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks.

Loci identified by a genome-wide association study of carotid artery stenosis in the eMERGE network.

An Endoscopic and Histologic Study on Healing of Radiofrequency Ablation Wounds in Patients With Barrett's Esophagus.

Timing of Resumption of Anticoagulation After Polypectomy and Frequency of Post-procedural Complications: A Post-hoc Analysis.

Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts.

Morbidity and Mortality of Typhoid Intestinal Perforation Among Children in Sub-Saharan Africa 1995-2019: A Scoping Review.

Association of exome sequences with plasma C-reactive protein levels in >9000 participants.

Actionable, pathogenic incidental findings in 1,000 participants' exomes.

A Hospital and Postdischarge Quality Improvement Intervention and Outcomes and Care for Patients With Heart Failure With Reduced Ejection Fraction.

The relationship between diastolic blood pressure and coronary artery calcification is dependent on single nucleotide polymorphisms on chromosome 9p21.3.

Novel gene-by-environment interactions: APOB and NPC1L1 variants affect the relationship between dietary and total plasma cholesterol.

Novel common and rare genetic determinants of paraoxonase activity: FTO, SERPINA12, and ITGAL.

An evaluation and adjustment method for natural proximal contacts of crowns using diamond dental strips: a case report.

ATAC-seq Data Processing.

Deep Learning on Chromatin Accessibility.

Measurement of proximal contact of single crowns to assess interproximal relief: A pilot study.

Single-Cell and Spatial Transcriptomic Analysis of Human Skin Delineates Intercellular Communication and Pathogenic Cells.

The ENCODE Uniform Analysis Pipelines.

The ENCODE Uniform Analysis Pipelines.

Dietary cholesterol increases paraoxonase 1 enzyme activity.