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1.

Chromatin context-dependent regulation and epigenetic manipulation of prime editing.

Li, Xiaoyi; Chen, Wei; Martin, Beth K; Calderon, Diego; Lee, Choli; Choi, Junhong; Chardon, Florence M; McDiarmid, Troy A; Daza, Riza M; Kim, Haedong; Lalanne, Jean-Benoît; Nathans, Jenny F; Lee, David S; Shendure, Jay.

Cell ; 187(10): 2411-2427.e25, 2024 May 09.

Artigo em Inglês | MEDLINE | ID: mdl-38608704

2.

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.

Gasperini, Molly; Hill, Andrew J; McFaline-Figueroa, José L; Martin, Beth; Kim, Seungsoo; Zhang, Melissa D; Jackson, Dana; Leith, Anh; Schreiber, Jacob; Noble, William S; Trapnell, Cole; Ahituv, Nadav; Shendure, Jay.

Cell ; 176(1-2): 377-390.e19, 2019 01 10.

Artigo em Inglês | MEDLINE | ID: mdl-30612741

3.

A single-cell time-lapse of mouse prenatal development from gastrula to birth.

Qiu, Chengxiang; Martin, Beth K; Welsh, Ian C; Daza, Riza M; Le, Truc-Mai; Huang, Xingfan; Nichols, Eva K; Taylor, Megan L; Fulton, Olivia; O'Day, Diana R; Gomes, Anne Roshella; Ilcisin, Saskia; Srivatsan, Sanjay; Deng, Xinxian; Disteche, Christine M; Noble, William Stafford; Hamazaki, Nobuhiko; Moens, Cecilia B; Kimelman, David; Cao, Junyue; Schier, Alexander F; Spielmann, Malte; Murray, Stephen A; Trapnell, Cole; Shendure, Jay.

Nature ; 626(8001): 1084-1093, 2024 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-38355799

4.

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.

Gasperini, Molly; Hill, Andrew J; McFaline-Figueroa, José L; Martin, Beth; Kim, Seungsoo; Zhang, Melissa D; Jackson, Dana; Leith, Anh; Schreiber, Jacob; Noble, William S; Trapnell, Cole; Ahituv, Nadav; Shendure, Jay.

Cell ; 176(6): 1516, 2019 Mar 07.

Artigo em Inglês | MEDLINE | ID: mdl-30849375

5.

A time-resolved, multi-symbol molecular recorder via sequential genome editing.

Choi, Junhong; Chen, Wei; Minkina, Anna; Chardon, Florence M; Suiter, Chase C; Regalado, Samuel G; Domcke, Silvia; Hamazaki, Nobuhiko; Lee, Choli; Martin, Beth; Daza, Riza M; Shendure, Jay.

Nature ; 608(7921): 98-107, 2022 08.

Artigo em Inglês | MEDLINE | ID: mdl-35794474

6.

Embryo model completes gastrulation to neurulation and organogenesis.

Amadei, Gianluca; Handford, Charlotte E; Qiu, Chengxiang; De Jonghe, Joachim; Greenfeld, Hannah; Tran, Martin; Martin, Beth K; Chen, Dong-Yuan; Aguilera-Castrejon, Alejandro; Hanna, Jacob H; Elowitz, Michael B; Hollfelder, Florian; Shendure, Jay; Glover, David M; Zernicka-Goetz, Magdalena.

Nature ; 610(7930): 143-153, 2022 10.

Artigo em Inglês | MEDLINE | ID: mdl-36007540

7.

Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters.

Lalanne, Jean-Benoît; Regalado, Samuel G; Domcke, Silvia; Calderon, Diego; Martin, Beth K; Li, Xiaoyi; Li, Tony; Suiter, Chase C; Lee, Choli; Trapnell, Cole; Shendure, Jay.

Nat Methods ; 2024 May 09.

Artigo em Inglês | MEDLINE | ID: mdl-38724692

8.

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands.

Roberts, Brian S; Partridge, E Christopher; Moyers, Bryan A; Agarwal, Vikram; Newberry, Kimberly M; Martin, Beth K; Shendure, Jay; Myers, Richard M; Cooper, Gregory M.

Genome Res ; 31(5): 866-876, 2021 05.

Artigo em Inglês | MEDLINE | ID: mdl-33879525

9.

Predicting cellular responses to complex perturbations in high-throughput screens.

Lotfollahi, Mohammad; Klimovskaia Susmelj, Anna; De Donno, Carlo; Hetzel, Leon; Ji, Yuge; Ibarra, Ignacio L; Srivatsan, Sanjay R; Naghipourfar, Mohsen; Daza, Riza M; Martin, Beth; Shendure, Jay; McFaline-Figueroa, Jose L; Boyeau, Pierre; Wolf, F Alexander; Yakubova, Nafissa; Günnemann, Stephan; Trapnell, Cole; Lopez-Paz, David; Theis, Fabian J.

Mol Syst Biol ; 19(6): e11517, 2023 06 12.

Artigo em Inglês | MEDLINE | ID: mdl-37154091

10.

Accurate classification of BRCA1 variants with saturation genome editing.

Findlay, Gregory M; Daza, Riza M; Martin, Beth; Zhang, Melissa D; Leith, Anh P; Gasperini, Molly; Janizek, Joseph D; Huang, Xingfan; Starita, Lea M; Shendure, Jay.

Nature ; 562(7726): 217-222, 2018 10.

Artigo em Inglês | MEDLINE | ID: mdl-30209399

11.

A systematic evaluation of the design and context dependencies of massively parallel reporter assays.

Klein, Jason C; Agarwal, Vikram; Inoue, Fumitaka; Keith, Aidan; Martin, Beth; Kircher, Martin; Ahituv, Nadav; Shendure, Jay.

Nat Methods ; 17(11): 1083-1091, 2020 11.

Artigo em Inglês | MEDLINE | ID: mdl-33046894

12.

All in the (Definition of) Family: Transnational Parent-Child Relationships, Rights to Family Life, and Canadian Immigration Law.

Redmond, Melissa; Martin, Beth.

J Fam Issues ; 44(3): 766-784, 2023 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-36798515

13.

Identifying over-the-counter information to prioritize for the purpose of reducing adverse drug reactions in older adults: A national survey of pharmacists.

Martin, Beth A; Breslow, Robert M; Sims, Amanda; Harben, Alyssa L; Bix, Laura; Becker, Mark W.

J Am Pharm Assoc (2003) ; 62(1): 167-175.e1, 2022.

Artigo em Inglês | MEDLINE | ID: mdl-34503908

14.

SwabExpress: An End-to-End Protocol for Extraction-Free COVID-19 Testing.

Srivatsan, Sanjay; Heidl, Sarah; Pfau, Brian; Martin, Beth K; Han, Peter D; Zhong, Weizhi; van Raay, Katrina; McDermot, Evan; Opsahl, Jordan; Gamboa, Luis; Smith, Nahum; Truong, Melissa; Cho, Shari; Barrow, Kaitlyn A; Rich, Lucille M; Stone, Jeremy; Wolf, Caitlin R; McCulloch, Denise J; Kim, Ashley E; Brandstetter, Elisabeth; Sohlberg, Sarah L; Ilcisin, Misja; Geyer, Rachel E; Chen, Wei; Gehring, Jase; Kosuri, Sriram; Bedford, Trevor; Rieder, Mark J; Nickerson, Deborah A; Chu, Helen Y; Konnick, Eric Q; Debley, Jason S; Shendure, Jay; Lockwood, Christina M; Starita, Lea M.

Clin Chem ; 68(1): 143-152, 2021 12 30.

Artigo em Inglês | MEDLINE | ID: mdl-34286830

15.

Just in time: mal-HLH in Sweden, 1997 to 2018.

Martin, Beth A.

Blood ; 143(3): 187-188, 2024 Jan 18.

Artigo em Inglês | MEDLINE | ID: mdl-38236612

16.

HemoMIPs-Automated analysis and result reporting pipeline for targeted sequencing data.

Kleinert, Philip; Martin, Beth; Kircher, Martin.

PLoS Comput Biol ; 16(6): e1007956, 2020 06.

Artigo em Inglês | MEDLINE | ID: mdl-32497118

17.

A survey of Wisconsin pharmacists about cannabinoid products: Are we ready to recommend?

Emmerling, Stephen; Martin, Beth; Schmitz, Natalie.

J Am Pharm Assoc (2003) ; 61(6): e71-e75, 2021.

Artigo em Inglês | MEDLINE | ID: mdl-34456146

18.

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity.

Inoue, Fumitaka; Kircher, Martin; Martin, Beth; Cooper, Gregory M; Witten, Daniela M; McManus, Michael T; Ahituv, Nadav; Shendure, Jay.

Genome Res ; 27(1): 38-52, 2017 01.

Artigo em Inglês | MEDLINE | ID: mdl-27831498

19.

Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay.

Shigaki, Dustin; Adato, Orit; Adhikari, Aashish N; Dong, Shengcheng; Hawkins-Hooker, Alex; Inoue, Fumitaka; Juven-Gershon, Tamar; Kenlay, Henry; Martin, Beth; Patra, Ayoti; Penzar, Dmitry D; Schubach, Max; Xiong, Chenling; Yan, Zhongxia; Boyle, Alan P; Kreimer, Anat; Kulakovskiy, Ivan V; Reid, John; Unger, Ron; Yosef, Nir; Shendure, Jay; Ahituv, Nadav; Kircher, Martin; Beer, Michael A.

Hum Mutat ; 40(9): 1280-1291, 2019 09.

Artigo em Inglês | MEDLINE | ID: mdl-31106481

20.

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.

Adey, Andrew; Burton, Joshua N; Kitzman, Jacob O; Hiatt, Joseph B; Lewis, Alexandra P; Martin, Beth K; Qiu, Ruolan; Lee, Choli; Shendure, Jay.

Nature ; 500(7461): 207-11, 2013 Aug 08.

Artigo em Inglês | MEDLINE | ID: mdl-23925245

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Chromatin context-dependent regulation and epigenetic manipulation of prime editing.

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.

A single-cell time-lapse of mouse prenatal development from gastrula to birth.

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.

A time-resolved, multi-symbol molecular recorder via sequential genome editing.

Embryo model completes gastrulation to neurulation and organogenesis.

Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters.

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands.

Predicting cellular responses to complex perturbations in high-throughput screens.

Accurate classification of BRCA1 variants with saturation genome editing.

A systematic evaluation of the design and context dependencies of massively parallel reporter assays.

All in the (Definition of) Family: Transnational Parent-Child Relationships, Rights to Family Life, and Canadian Immigration Law.

Identifying over-the-counter information to prioritize for the purpose of reducing adverse drug reactions in older adults: A national survey of pharmacists.

SwabExpress: An End-to-End Protocol for Extraction-Free COVID-19 Testing.

Just in time: mal-HLH in Sweden, 1997 to 2018.

HemoMIPs-Automated analysis and result reporting pipeline for targeted sequencing data.

A survey of Wisconsin pharmacists about cannabinoid products: Are we ready to recommend?

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity.

Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay.

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.