Detalhe da pesquisa
1.
The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets.
Nucleic Acids Res
; 51(8): 3618-3630, 2023 05 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-37026477
2.
Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories.
Proc Natl Acad Sci U S A
; 119(30): e2118262119, 2022 07 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-35858453
3.
Metabolic and genetic basis for auxotrophies in Gram-negative species.
Proc Natl Acad Sci U S A
; 117(11): 6264-6273, 2020 03 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-32132208
4.
Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators, and role in key physiological response.
Proc Natl Acad Sci U S A
; 117(29): 17228-17239, 2020 07 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-32616573
5.
Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration.
Proc Natl Acad Sci U S A
; 116(50): 25287-25292, 2019 12 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-31767748
6.
OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States.
Mol Biol Evol
; 37(3): 660-667, 2020 03 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31651953
7.
A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types.
PLoS Comput Biol
; 15(1): e1006644, 2019 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30625152
8.
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.
PLoS Comput Biol
; 15(4): e1006971, 2019 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-31009451
9.
Strain-Specific Metabolic Requirements Revealed by a Defined Minimal Medium for Systems Analyses of Staphylococcus aureus.
Appl Environ Microbiol
; 85(21)2019 11 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31471305
10.
Elucidating the CodY regulon in Staphylococcus aureus USA300 substrains TCH1516 and LAC.
mSystems
; 8(4): e0027923, 2023 08 31.
Artigo
em Inglês
| MEDLINE | ID: mdl-37310465
11.
Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids.
Front Mol Biosci
; 9: 963548, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-36072429
12.
Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures.
mSystems
; 7(6): e0046722, 2022 12 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-36317888
13.
Path to improving the life cycle and quality of genome-scale models of metabolism.
Cell Syst
; 12(9): 842-859, 2021 09 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-34555324
14.
Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens.
mSystems
; 6(1)2021 Jan 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-33500331
15.
Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus.
Commun Biol
; 4(1): 793, 2021 06 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-34172889
16.
Identifying the effect of vancomycin on health care-associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media.
Gigascience
; 10(1)2021 01 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-33420779
17.
A workflow for generating multi-strain genome-scale metabolic models of prokaryotes.
Nat Protoc
; 15(1): 1-14, 2020 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31863076
18.
Elucidation of Regulatory Modes for Five Two-Component Systems in Escherichia coli Reveals Novel Relationships.
mSystems
; 5(6)2020 Nov 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-33172971
19.
Systems Biology and Pangenome of Salmonella O-Antigens.
mBio
; 10(4)2019 08 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-31455646
20.
Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media.
Sci Data
; 6(1): 43, 2019 04 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-31028276