Pesquisa | Portal de Pesquisa da BVS Enfermagem

1.

Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.

Hladish, Thomas J; Pillai, Alexander N; Pearson, Carl A B; Toh, Kok Ben; Tamayo, Andrea C; Stoltzfus, Arlin; Longini, Ira M.

PLoS Comput Biol ; 20(5): e1012128, 2024 May 31.

Artigo em Inglês | MEDLINE | ID: mdl-38820570

2.

Mutation bias shapes the spectrum of adaptive substitutions.

Cano, Alejandro V; Rozhonová, Hana; Stoltzfus, Arlin; McCandlish, David M; Payne, Joshua L.

Proc Natl Acad Sci U S A ; 119(7)2022 02 15.

Artigo em Inglês | MEDLINE | ID: mdl-35145034

3.

Mutation and Selection Induce Correlations between Selection Coefficients and Mutation Rates.

Gitschlag, Bryan L; Cano, Alejandro V; Payne, Joshua L; McCandlish, David M; Stoltzfus, Arlin.

Am Nat ; 202(4): 534-557, 2023 10.

Artigo em Inglês | MEDLINE | ID: mdl-37792926

4.

Mutational Biases Influence Parallel Adaptation.

Stoltzfus, Arlin; McCandlish, David M.

Mol Biol Evol ; 34(9): 2163-2172, 2017 09 01.

Artigo em Inglês | MEDLINE | ID: mdl-28645195

5.

On the Causes of Evolutionary Transition:Transversion Bias.

Stoltzfus, Arlin; Norris, Ryan W.

Mol Biol Evol ; 33(3): 595-602, 2016 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-26609078

6.

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Stoltzfus, Arlin; Lapp, Hilmar; Matasci, Naim; Deus, Helena; Sidlauskas, Brian; Zmasek, Christian M; Vaidya, Gaurav; Pontelli, Enrico; Cranston, Karen; Vos, Rutger; Webb, Campbell O; Harmon, Luke J; Pirrung, Megan; O'Meara, Brian; Pennell, Matthew W; Mirarab, Siavash; Rosenberg, Michael S; Balhoff, James P; Bik, Holly M; Heath, Tracy A; Midford, Peter E; Brown, Joseph W; McTavish, Emily Jane; Sukumaran, Jeet; Westneat, Mark; Alfaro, Michael E; Steele, Aaron; Jordan, Greg.

BMC Bioinformatics ; 14: 158, 2013 May 13.

Artigo em Inglês | MEDLINE | ID: mdl-23668630

7.

NeXML: rich, extensible, and verifiable representation of comparative data and metadata.

Vos, Rutger A; Balhoff, James P; Caravas, Jason A; Holder, Mark T; Lapp, Hilmar; Maddison, Wayne P; Midford, Peter E; Priyam, Anurag; Sukumaran, Jeet; Xia, Xuhua; Stoltzfus, Arlin.

Syst Biol ; 61(4): 675-89, 2012 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-22357728

8.

Mutation-biased adaptation in Andean house wrens.

Stoltzfus, Arlin; McCandlish, David M.

Proc Natl Acad Sci U S A ; 112(45): 13753-4, 2015 Nov 10.

Artigo em Inglês | MEDLINE | ID: mdl-26489650

9.

Mutation bias and the predictability of evolution.

Cano, Alejandro V; Gitschlag, Bryan L; Rozhonová, Hana; Stoltzfus, Arlin; McCandlish, David M; Payne, Joshua L.

Philos Trans R Soc Lond B Biol Sci ; 378(1877): 20220055, 2023 05 22.

Artigo em Inglês | MEDLINE | ID: mdl-37004719

10.

Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.

Hladish, Thomas J; Pillai, Alexander N; Pearson, Carl A B; Toh, Kok Ben; Tamayo, Andrea; Stoltzfus, Arlin; Longini, Ira M.

medRxiv ; 2023 Mar 10.

Artigo em Inglês | MEDLINE | ID: mdl-36945423

11.

Gene identification in black cohosh (Actaea racemosa L.): expressed sequence tag profiling and genetic screening yields candidate genes for production of bioactive secondary metabolites.

Spiering, Martin J; Urban, Lori A; Nuss, Donald L; Gopalan, Vivek; Stoltzfus, Arlin; Eisenstein, Edward.

Plant Cell Rep ; 30(4): 613-29, 2011 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-21188383

12.

Avoidance of Self during CRISPR Immunization.

Weissman, J L; Stoltzfus, Arlin; Westra, Edze R; Johnson, Philip L F.

Trends Microbiol ; 28(7): 543-553, 2020 07.

Artigo em Inglês | MEDLINE | ID: mdl-32544441

13.

Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees.

Nguyen, Van D; Nguyen, Thanh H; Tayeen, Abu Saleh Md; Laughinghouse, H Dail; Sánchez-Reyes, Luna L; Wiggins, Jodie; Pontelli, Enrico; Mozzherin, Dmitry; O'Meara, Brian; Stoltzfus, Arlin.

Evol Bioinform Online ; 16: 1176934319899384, 2020.

Artigo em Inglês | MEDLINE | ID: mdl-32372858

14.

Climbing mount probable: mutation as a cause of nonrandomness in evolution.

Stoltzfus, Arlin; Yampolsky, Lev Y.

J Hered ; 100(5): 637-47, 2009.

Artigo em Inglês | MEDLINE | ID: mdl-19625453

15.

The role of mutation bias in adaptive molecular evolution: insights from convergent changes in protein function.

Storz, Jay F; Natarajan, Chandrasekhar; Signore, Anthony V; Witt, Christopher C; McCandlish, David M; Stoltzfus, Arlin.

Philos Trans R Soc Lond B Biol Sci ; 374(1777): 20180238, 2019 07 22.

Artigo em Inglês | MEDLINE | ID: mdl-31154983

16.

Evidence for a predominant role of oxidative damage in germline mutation in mammals.

Stoltzfus, Arlin.

Mutat Res ; 644(1-2): 71-3, 2008 Sep 26.

Artigo em Inglês | MEDLINE | ID: mdl-18597793

17.

Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data.

Hladish, Thomas; Gopalan, Vivek; Liang, Chengzhi; Qiu, Weigang; Yang, Peter; Stoltzfus, Arlin.

BMC Bioinformatics ; 8: 191, 2007 Jun 08.

Artigo em Inglês | MEDLINE | ID: mdl-17559666

18.

Molecular evolution: introns fall into place.

Stoltzfus, Arlin.

Curr Biol ; 14(9): R351-2, 2004 May 04.

Artigo em Inglês | MEDLINE | ID: mdl-15120089

19.

Why we don't want another "Synthesis".

Stoltzfus, Arlin.

Biol Direct ; 12(1): 23, 2017 10 02.

Artigo em Inglês | MEDLINE | ID: mdl-28969666

20.

The exchangeability of amino acids in proteins.

Yampolsky, Lev Y; Stoltzfus, Arlin.

Genetics ; 170(4): 1459-72, 2005 Aug.

Artigo em Inglês | MEDLINE | ID: mdl-15944362

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Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.

Mutation bias shapes the spectrum of adaptive substitutions.

Mutation and Selection Induce Correlations between Selection Coefficients and Mutation Rates.

Mutational Biases Influence Parallel Adaptation.

On the Causes of Evolutionary Transition:Transversion Bias.

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

NeXML: rich, extensible, and verifiable representation of comparative data and metadata.

Mutation-biased adaptation in Andean house wrens.

Mutation bias and the predictability of evolution.

Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.

Gene identification in black cohosh (Actaea racemosa L.): expressed sequence tag profiling and genetic screening yields candidate genes for production of bioactive secondary metabolites.

Avoidance of Self during CRISPR Immunization.

Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees.

Climbing mount probable: mutation as a cause of nonrandomness in evolution.

The role of mutation bias in adaptive molecular evolution: insights from convergent changes in protein function.

Evidence for a predominant role of oxidative damage in germline mutation in mammals.

Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data.

Molecular evolution: introns fall into place.

Why we don't want another "Synthesis".

The exchangeability of amino acids in proteins.