Detalhe da pesquisa
1.
Massively parallel single-cell sequencing of diverse microbial populations.
Nat Methods
; 21(2): 228-235, 2024 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-38233503
2.
Gut microbiota interspecies interactions shape the response of Clostridioides difficile to clinically relevant antibiotics.
PLoS Biol
; 21(5): e3002100, 2023 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37167201
3.
Efficient plasmid transfer via natural competence in a microbial co-culture.
Mol Syst Biol
; 19(3): e11406, 2023 03 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-36714980
4.
Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions.
PLoS Comput Biol
; 19(9): e1011436, 2023 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37773951
5.
Integrating Systems and Synthetic Biology to Understand and Engineer Microbiomes.
Annu Rev Biomed Eng
; 23: 169-201, 2021 07 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-33781078
6.
Negative interactions determine Clostridioides difficile growth in synthetic human gut communities.
Mol Syst Biol
; 17(10): e10355, 2021 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-34693621
7.
Scalable nonlinear programming framework for parameter estimation in dynamic biological system models.
PLoS Comput Biol
; 15(3): e1006828, 2019 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-30908479
8.
Understanding and Engineering Distributed Biochemical Pathways in Microbial Communities.
Biochemistry
; 58(2): 94-107, 2019 01 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30457843
9.
Deciphering microbial interactions in synthetic human gut microbiome communities.
Mol Syst Biol
; 14(6): e8157, 2018 06 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-29930200
10.
Population diversification in a yeast metabolic program promotes anticipation of environmental shifts.
PLoS Biol
; 13(1): e1002042, 2015 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-25626086
11.
EcoFABs: advancing microbiome science through standardized fabricated ecosystems.
Nat Methods
; 16(7): 567-571, 2019 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-31227812
12.
Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response.
Proc Natl Acad Sci U S A
; 109(48): E3324-33, 2012 Nov 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-23150580
13.
Shaping human gut community assembly and butyrate production by controlling the arginine dihydrolase pathway.
bioRxiv
; 2024 Apr 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-37986770
14.
Dynamic Multiplexed Control and Modeling of Optogenetic Systems Using the High-Throughput Optogenetic Platform, Lustro.
ACS Synth Biol
; 13(5): 1424-1433, 2024 May 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-38684225
15.
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes.
bioRxiv
; 2024 Apr 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-38659900
16.
Single-cell analysis of multiple invertible promoters reveals differential inversion rates as a strong determinant of bacterial population heterogeneity.
Sci Adv
; 9(31): eadg5476, 2023 08 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-37540747
17.
Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbations.
Nat Ecol Evol
; 7(1): 127-142, 2023 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36604549
18.
Control points for design of taxonomic composition in synthetic human gut communities.
Cell Syst
; 14(12): 1044-1058.e13, 2023 12 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-38091992
19.
Programming bacteria for multiplexed DNA detection.
Nat Commun
; 14(1): 2001, 2023 04 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-37037805
20.
Microbial community-scale metabolic modeling predicts personalized short chain fatty acid production profiles in the human gut.
bioRxiv
; 2023 Nov 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-36909644