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1.

Out with the old, in with the new: Pioneer transcription factors as activators and repressors of lineage specification genes.

Liu, Yang; Wade, Paul A.

Mol Cell ; 84(3): 411-412, 2024 Feb 01.

Artigo em Inglês | MEDLINE | ID: mdl-38307001

2.

Genomic transcription factor binding site selection is edited by the chromatin remodeling factor CHD4.

Saotome, Mika; Poduval, Deepak B; Grimm, Sara A; Nagornyuk, Aerica; Gunarathna, Sakuntha; Shimbo, Takashi; Wade, Paul A; Takaku, Motoki.

Nucleic Acids Res ; 52(7): 3607-3622, 2024 Apr 24.

Artigo em Inglês | MEDLINE | ID: mdl-38281186

3.

Reversing SKI-SMAD4-mediated suppression is essential for T_H17 cell differentiation.

Zhang, Song; Takaku, Motoki; Zou, Liyun; Gu, Ai-di; Chou, Wei-Chun; Zhang, Ge; Wu, Bing; Kong, Qing; Thomas, Seddon Y; Serody, Jonathan S; Chen, Xian; Xu, Xiaojiang; Wade, Paul A; Cook, Donald N; Ting, Jenny P Y; Wan, Yisong Y.

Nature ; 551(7678): 105-109, 2017 11 02.

Artigo em Inglês | MEDLINE | ID: mdl-29072299

4.

Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation.

Ren, Wendan; Fan, Huitao; Grimm, Sara A; Guo, Yiran; Kim, Jae Jin; Yin, Jiekai; Li, Linhui; Petell, Christopher J; Tan, Xiao-Feng; Zhang, Zhi-Min; Coan, John P; Gao, Linfeng; Cai, Ling; Detrick, Brittany; Çetin, Burak; Cui, Qiang; Strahl, Brian D; Gozani, Or; Wang, Yinsheng; Miller, Kyle M; O'Leary, Seán E; Wade, Paul A; Patel, Dinshaw J; Wang, Gang Greg; Song, Jikui.

Proc Natl Acad Sci U S A ; 117(31): 18439-18447, 2020 08 04.

Artigo em Inglês | MEDLINE | ID: mdl-32675241

5.

Cancer-specific mutation of GATA3 disrupts the transcriptional regulatory network governed by Estrogen Receptor alpha, FOXA1 and GATA3.

Takaku, Motoki; Grimm, Sara A; De Kumar, Bony; Bennett, Brian D; Wade, Paul A.

Nucleic Acids Res ; 48(9): 4756-4768, 2020 05 21.

Artigo em Inglês | MEDLINE | ID: mdl-32232341

6.

Proteins That Read DNA Methylation.

Liu, Ke; Shimbo, Takashi; Song, Xiaosheng; Wade, Paul A; Min, Jinrong.

Adv Exp Med Biol ; 1389: 269-293, 2022.

Artigo em Inglês | MEDLINE | ID: mdl-36350514

7.

SnapShot: Chromatin remodeling: CHD.

Sims, Jennifer K; Wade, Paul A.

Cell ; 144(4): 626-626.e1, 2011 Feb 18.

Artigo em Inglês | MEDLINE | ID: mdl-21335242

8.

CHD4 and the NuRD complex directly control cardiac sarcomere formation.

Wilczewski, Caralynn M; Hepperla, Austin J; Shimbo, Takashi; Wasson, Lauren; Robbe, Zachary L; Davis, Ian J; Wade, Paul A; Conlon, Frank L.

Proc Natl Acad Sci U S A ; 115(26): 6727-6732, 2018 06 26.

Artigo em Inglês | MEDLINE | ID: mdl-29891665

9.

DNA methylation and transcriptome aberrations mediated by ERα in mouse seminal vesicles following developmental DES exposure.

Li, Yin; Hamilton, Katherine J; Wang, Tianyuan; Coons, Laurel A; Jefferson, Wendy N; Li, Ruifang; Wang, Yu; Grimm, Sara A; Ramsey, J Tyler; Liu, Liwen; Gerrish, Kevin E; Williams, Carmen J; Wade, Paul A; Korach, Kenneth S.

Proc Natl Acad Sci U S A ; 115(18): E4189-E4198, 2018 05 01.

Artigo em Inglês | MEDLINE | ID: mdl-29666266

10.

The CHD4-related syndrome: a comprehensive investigation of the clinical spectrum, genotype-phenotype correlations, and molecular basis.

Weiss, Karin; Lazar, Hayley P; Kurolap, Alina; Martinez, Ariel F; Paperna, Tamar; Cohen, Lior; Smeland, Marie F; Whalen, Sandra; Heide, Solveig; Keren, Boris; Terhal, Pauline; Irving, Melita; Takaku, Motoki; Roberts, John D; Petrovich, Robert M; Schrier Vergano, Samantha A; Kenney, Amy; Hove, Hanne; DeChene, Elizabeth; Quinonez, Shane C; Colin, Estelle; Ziegler, Alban; Rumple, Melissa; Jain, Mahim; Monteil, Danielle; Roeder, Elizabeth R; Nugent, Kimberly; van Haeringen, Arie; Gambello, Michael; Santani, Avni; Medne, Livija; Krock, Bryan; Skraban, Cara M; Zackai, Elaine H; Dubbs, Holly A; Smol, Thomas; Ghoumid, Jamal; Parker, Michael J; Wright, Michael; Turnpenny, Peter; Clayton-Smith, Jill; Metcalfe, Kay; Kurumizaka, Hitoshi; Gelb, Bruce D; Baris Feldman, Hagit; Campeau, Philippe M; Muenke, Maximilian; Wade, Paul A; Lachlan, Katherine.

Genet Med ; 22(2): 389-397, 2020 02.

Artigo em Inglês | MEDLINE | ID: mdl-31388190

11.

Correction: The CHD4-related syndrome: a comprehensive investigation of the clinical spectrum, genotype-phenotype correlations, and molecular basis.

Weiss, Karin; Lazar, Hayley P; Kurolap, Alina; Martinez, Ariel F; Paperna, Tamar; Cohen, Lior; Smeland, Marie F; Whalen, Sandra; Heide, Solveig; Keren, Boris; Terhal, Pauline; Irving, Melita; Takaku, Motoki; Roberts, John D; Petrovich, Robert M; Vergano, Samantha A Schrier; Kenney, Amy; Hove, Hanne; DeChene, Elizabeth; Quinonez, Shane C; Colin, Estelle; Ziegler, Alban; Rumple, Melissa; Jain, Mahim; Monteil, Danielle; Roeder, Elizabeth R; Nugent, Kimberly; van Haeringen, Arie; Gambello, Michael; Santani, Avni; Medne, Livija; Krock, Bryan; Skraban, Cara M; Zackai, Elaine H; Dubbs, Holly A; Smol, Thomas; Ghoumid, Jamal; Parker, Michael J; Wright, Michael; Turnpenny, Peter; Clayton-Smith, Jill; Metcalfe, Kay; Kurumizaka, Hitoshi; Gelb, Bruce D; Feldman, Hagit Baris; Campeau, Philippe M; Muenke, Maximilian; Wade, Paul A; Lachlan, Katherine.

Genet Med ; 22(3): 669, 2020 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-31844176

12.

R loops: lassoing DNA methylation at CpGi.

Vertino, Paula M; Wade, Paul A.

Mol Cell ; 45(6): 708-9, 2012 Mar 30.

Artigo em Inglês | MEDLINE | ID: mdl-22464440

13.

Rif1 promotes a repressive chromatin state to safeguard against endogenous retrovirus activation.

Li, Pishun; Wang, Li; Bennett, Brian D; Wang, Jiajia; Li, Jialun; Qin, Yufeng; Takaku, Motoki; Wade, Paul A; Wong, Jiemin; Hu, Guang.

Nucleic Acids Res ; 45(22): 12723-12738, 2017 Dec 15.

Artigo em Inglês | MEDLINE | ID: mdl-29040764

14.

DNA Methylation Changes in Tbx3 in a Mouse Model Exposed to Polybrominated Diphenyl Ethers.

Shimbo, Takashi; Dunnick, June K; Brix, Amy; Mav, Deepak; Shah, Ruchir; Roberts, John D; Wade, Paul A.

Int J Toxicol ; 36(3): 229-238, 2017.

Artigo em Inglês | MEDLINE | ID: mdl-28466692

15.

Human tRNA genes function as chromatin insulators.

Raab, Jesse R; Chiu, Jonathan; Zhu, Jingchun; Katzman, Sol; Kurukuti, Sreenivasulu; Wade, Paul A; Haussler, David; Kamakaka, Rohinton T.

EMBO J ; 31(2): 330-50, 2012 Jan 18.

Artigo em Inglês | MEDLINE | ID: mdl-22085927

16.

DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation.

Lai, Anne Y; Mav, Deepak; Shah, Ruchir; Grimm, Sara A; Phadke, Dhiral; Hatzi, Katerina; Melnick, Ari; Geigerman, Cissy; Sobol, Steve E; Jaye, David L; Wade, Paul A.

Genome Res ; 23(12): 2030-41, 2013 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-24013550

17.

Epigenetic control of Ccr7 expression in distinct lineages of lung dendritic cells.

Moran, Timothy P; Nakano, Hideki; Kondilis-Mangum, Hrisavgi D; Wade, Paul A; Cook, Donald N.

J Immunol ; 193(10): 4904-13, 2014 Nov 15.

Artigo em Inglês | MEDLINE | ID: mdl-25297875

18.

BCL-2 family protein, BAD is down-regulated in breast cancer and inhibits cell invasion.

Cekanova, Maria; Fernando, Romaine I; Siriwardhana, Nalin; Sukhthankar, Mugdha; Parra, Columba de la; Woraratphoka, Jirayus; Malone, Christine; Ström, Anders; Baek, Seung J; Wade, Paul A; Saxton, Arnold M; Donnell, Robert M; Pestell, Richard G; Dharmawardhane, Suranganie; Wimalasena, Jay.

Exp Cell Res ; 331(1): 1-10, 2015 Feb 01.

Artigo em Inglês | MEDLINE | ID: mdl-25499972

19.

Proteins That Read DNA Methylation.

Shimbo, Takashi; Wade, Paul A.

Adv Exp Med Biol ; 945: 303-320, 2016.

Artigo em Inglês | MEDLINE | ID: mdl-27826844

20.

MBD3 localizes at promoters, gene bodies and enhancers of active genes.

Shimbo, Takashi; Du, Ying; Grimm, Sara A; Dhasarathy, Archana; Mav, Deepak; Shah, Ruchir R; Shi, Huidong; Wade, Paul A.

PLoS Genet ; 9(12): e1004028, 2013.

Artigo em Inglês | MEDLINE | ID: mdl-24385926

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Out with the old, in with the new: Pioneer transcription factors as activators and repressors of lineage specification genes.

Genomic transcription factor binding site selection is edited by the chromatin remodeling factor CHD4.

Reversing SKI-SMAD4-mediated suppression is essential for T_H17 cell differentiation.

Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation.

Cancer-specific mutation of GATA3 disrupts the transcriptional regulatory network governed by Estrogen Receptor alpha, FOXA1 and GATA3.

Proteins That Read DNA Methylation.

SnapShot: Chromatin remodeling: CHD.

CHD4 and the NuRD complex directly control cardiac sarcomere formation.

DNA methylation and transcriptome aberrations mediated by ERα in mouse seminal vesicles following developmental DES exposure.

The CHD4-related syndrome: a comprehensive investigation of the clinical spectrum, genotype-phenotype correlations, and molecular basis.

Correction: The CHD4-related syndrome: a comprehensive investigation of the clinical spectrum, genotype-phenotype correlations, and molecular basis.

R loops: lassoing DNA methylation at CpGi.

Rif1 promotes a repressive chromatin state to safeguard against endogenous retrovirus activation.

DNA Methylation Changes in Tbx3 in a Mouse Model Exposed to Polybrominated Diphenyl Ethers.

Human tRNA genes function as chromatin insulators.

DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation.

Epigenetic control of Ccr7 expression in distinct lineages of lung dendritic cells.

BCL-2 family protein, BAD is down-regulated in breast cancer and inhibits cell invasion.

Proteins That Read DNA Methylation.

MBD3 localizes at promoters, gene bodies and enhancers of active genes.