Detalhe da pesquisa
1.
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity.
Nucleic Acids Res
; 51(D1): D445-D451, 2023 01 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-36350662
2.
A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand.
Nucleic Acids Res
; 50(18): 10264-10277, 2022 10 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-36130228
3.
LEMMI: a continuous benchmarking platform for metagenomics classifiers.
Genome Res
; 30(8): 1208-1216, 2020 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-32616517
4.
Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart.
PLoS Comput Biol
; 18(3): e1009947, 2022 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-35259160
5.
OrthoDB in 2020: evolutionary and functional annotations of orthologs.
Nucleic Acids Res
; 49(D1): D389-D393, 2021 01 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-33196836
6.
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.
Mol Biol Evol
; 38(10): 4647-4654, 2021 09 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-34320186
7.
The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.
BMC Biol
; 19(1): 41, 2021 03 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-33750380
8.
Phigaro: high-throughput prophage sequence annotation.
Bioinformatics
; 36(12): 3882-3884, 2020 06 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32311023
9.
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs.
Nucleic Acids Res
; 47(D1): D807-D811, 2019 01 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-30395283
10.
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
BMC Bioinformatics
; 21(1): 257, 2020 Jun 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-32571209
11.
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics.
Mol Biol Evol
; 35(3): 543-548, 2018 Mar 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29220515
12.
Comparative genomics groups phages of Negativicutes and classical Firmicutes despite different Gram-staining properties.
Environ Microbiol
; 21(11): 3989-4001, 2019 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-31314945
13.
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs.
Nucleic Acids Res
; 45(D1): D744-D749, 2017 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-27899580
14.
ACI-1 beta-lactamase is widespread across human gut microbiomes in Negativicutes due to transposons harboured by tailed prophages.
Environ Microbiol
; 20(6): 2288-2300, 2018 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-30014616
15.
CEGA--a catalog of conserved elements from genomic alignments.
Nucleic Acids Res
; 44(D1): D96-100, 2016 Jan 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-26527719
16.
Gene age predicts the strength of purifying selection acting on gene expression variation in humans.
Am J Hum Genet
; 95(6): 660-74, 2014 Dec 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-25480033
17.
Metagenomics analysis of red blood cell and fresh-frozen plasma units.
Transfusion
; 57(7): 1787-1800, 2017 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-28497550
18.
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.
Nucleic Acids Res
; 43(Database issue): D250-6, 2015 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-25428351
19.
Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.
BMC Biol
; 19(1): 150, 2021 Jul 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-34325695
20.
Integration of microRNA miR-122 in hepatic circadian gene expression.
Genes Dev
; 23(11): 1313-26, 2009 Jun 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-19487572