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1.
Genet Med ; 25(3): 100348, 2023 03.
Article in English | MEDLINE | ID: mdl-36571464

ABSTRACT

PURPOSE: RAS genes (HRAS, KRAS, and NRAS) are commonly found to be mutated in cancers, and activating RAS variants are also found in disorders of somatic mosaicism (DoSM). A survey of the mutational spectrum of RAS variants in DoSM has not been performed. METHODS: A total of 938 individuals with suspected DoSM underwent high-sensitivity clinical next-generation sequencing-based testing. We investigated the mutational spectrum and genotype-phenotype associations of mosaic RAS variants. RESULTS: In this article, we present a series of individuals with DoSM with RAS variants. Classic hotspots, including Gly12, Gly13, and Gln61 constituted the majority of RAS variants observed in DoSM. Furthermore, we present 12 individuals with HRAS and KRAS in-frame duplication/insertion (dup/ins) variants in the switch II domain. Among the 18.3% individuals with RAS in-frame dup/ins variants, clinical findings were mainly associated with vascular malformations. Hotspots were associated with a broad phenotypic spectrum, including vascular tumors, vascular malformations, nevoid proliferations, segmental overgrowth, digital anomalies, and combinations of these. The median age at testing was higher and the variant allelic fraction was lower in individuals with in-frame dup/ins variants than those in individuals with mosaic RAS hotspots. CONCLUSION: Our work provides insight into the allelic and clinical heterogeneity of mosaic RAS variants in nonmalignant conditions.


Subject(s)
Mosaicism , Vascular Malformations , Humans , Proto-Oncogene Proteins p21(ras)/genetics , Mutation , Alleles , Vascular Malformations/genetics
2.
Sensors (Basel) ; 22(3)2022 Jan 28.
Article in English | MEDLINE | ID: mdl-35161773

ABSTRACT

The initial quantification of data quality is an important step in seismic data acquisition design, including the choice of sensing strategy. The signal-to-noise ratio (SNR) often drives the choice of distributed acoustic sensing (DAS) parameters in vertical seismic profiling (VSP). We compare this established approach for data quality assessment with metrics comparing DAS data products to available well logs. First, we create kinematic and dynamic data products derived from original seismic data, such as the interval velocity and amplitude of P-wave arrivals. Next, we quantify the quality of derived data products using well log data by calculating various statistical metrics. Using a large dataset of 220 different VSP experiments with a fixed source location and various DAS acquisition parameters, such as gauge length (GL), conveyance type, and lead-in length, we analyzed the statistical distribution of various metrics. The results indicate the decoupling between seismic-based and log-based metrics as well as between the quality of dynamic and kinematic data-products for the same record. Therefore, we propose using fit-for-purpose metrics to optimize the acquisition cost. In particular, for ray-based tomographic processing, it is sufficient to use traveltime-based metrics. On the other hand, for advanced dynamic analysis, amplitude-based metrics define the quality of final processing products. Hence, it is crucial to use fit-for-purpose metrics to optimize DAS VSP acquisition.


Subject(s)
Benchmarking , Tomography, X-Ray Computed , Signal-To-Noise Ratio , Sound
3.
J Cell Physiol ; 229(10): 1484-93, 2014 Oct.
Article in English | MEDLINE | ID: mdl-24648251

ABSTRACT

Vimentin is a major intermediate filament protein in vascular endothelial cells which might be involved in their function as a barrier tissue. It is proposed to dynamically maintain integrity of the endothelium as a tightly regulated permeability barrier that is subjected to a variety of shear and contractile forces. The results described in this report demonstrate that vimentin plays that role through mechanisms that are dependent on its phosphorylation state. Withaferin A (WFA), a vimentin targeting drug is shown to disrupt endothelial barrier function through its effects on vimentin filament distribution and physical properties. These effects are related to WFA's ability to increase vimentin phosphorylation. Through overexpressing a non-phosphorylatable vimentin mutant we can block the effects of WFA on vimentin distribution and barrier permeability. The barrier augmentation effect appears to extend to endothelial cells that do not express detectable mutant vimentin which might suggest transmissible effects across cells. Blocking vimentin phosphorylation also protects the endothelial barrier against LPS endotoxin, implicating it as a target for drug development against pulmonary edema and acute respiratory distress syndrome (ARDS).


Subject(s)
Capillary Permeability , Endothelial Cells/metabolism , Vimentin/metabolism , Animals , Capillary Permeability/drug effects , Cells, Cultured , Drug Resistance , Endothelial Cells/drug effects , Lipopolysaccharides/pharmacology , Mutation , Phosphorylation , Rats , Serine , Solubility , Time Factors , Transfection , Vimentin/chemistry , Vimentin/genetics , Withanolides/pharmacology , p21-Activated Kinases/metabolism
4.
Australas J Ultrasound Med ; 27(3): 149-158, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39328253

ABSTRACT

Introduction: Central venous access plays a crucial role in various clinical settings, and ultrasound guidance has become increasingly popular for improving its safety and success rates. The aim of this meta-analysis was to compare the short-axis (SAX) and long-axis (LAX) ultrasound-guided techniques for internal jugular vein (IJV) cannulation in terms of first needle pass success rate, number of cannulation attempts, access time, guidewire insertion time, posterior IJV wall puncture, arterial puncture, haematoma and catheter-related bloodstream infection. Methods: A comprehensive literature search was conducted, and randomised controlled trials (RCTs) comparing SAX and LAX techniques for IJV cannulation on adults were included. Results: A total of 11 RCTs involving 1183 patients were included in the meta-analysis. The SAX technique demonstrated a significantly greater first needle pass success rate and faster IJV access time compared to the LAX technique. However, more posterior IJV wall puncture was significantly associated with the SAX technique. There was no significant difference between the two techniques in terms of number of cannulation attempts, guidewire insertion time, arterial puncture, haematoma and catheter-related bloodstream infection. Conclusion: This meta-analysis suggests that the SAX technique may have advantages over the LAX technique in terms of first needle pass success rate and potentially reducing cannulation attempts and access time. However, the occurrence of posterior IJV wall puncture raises concerns. The decision on the choice of technique should be based on individual patient factors and operator proficiency.

5.
Autops Case Rep ; 9(1): e2018053, 2019.
Article in English | MEDLINE | ID: mdl-30863728

ABSTRACT

Metastatic spread of cancer via the thoracic duct may lead to an enlargement of the left supraclavicular node, known as the Virchow node (VN), leading to an appreciable mass that can be recognized clinically - a Troisier sign. The VN is of profound clinical importance; however, there have been few studies of its regional anatomical relationships. Our report presents a case of a Troisier sign/VN discovered during cadaveric dissection in an individual whose cause of death was, reportedly, chronic obstructive pulmonary disease. The VN was found to arise from an antecedent pulmonary adenocarcinoma. Our report includes a regional study of the anatomy as well as relevant gross pathology and histopathology. Our anatomical findings suggest that the VN may contribute to vascular thoracic outlet syndrome as well as the brachial plexopathy of neurogenic thoracic outlet syndrome. Further, the VN has the potential to cause compression of the phrenic nerve, contributing to unilateral phrenic neuropathy and subsequent dyspnea. Recognition of the Troisier sign/VN is of great clinical importance. Similarly, an appreciation of the anatomy surrounding the VN, and the potential for the enlarged node to encroach on neurovascular structures, is also important in the study of a patient. The presence of a Troisier sign/VN should be assessed when thoracic outlet syndrome and phrenic neuropathy are suspected. Conversely, when a VN is identified, the possibility of concomitant or subsequent thoracic outlet syndrome and phrenic neuropathy should be considered.

6.
Autops. Case Rep ; 9(1): e2018053, Jan.-Mar. 2019. ilus
Article in English | LILACS | ID: biblio-987077

ABSTRACT

ABSTRACT: Metastatic spread of cancer via the thoracic duct may lead to an enlargement of the left supraclavicular node, known as the Virchow node (VN), leading to an appreciable mass that can be recognized clinically ­ a Troisier sign. The VN is of profound clinical importance; however, there have been few studies of its regional anatomical relationships. Our report presents a case of a Troisier sign/VN discovered during cadaveric dissection in an individual whose cause of death was, reportedly, chronic obstructive pulmonary disease. The VN was found to arise from an antecedent pulmonary adenocarcinoma. Our report includes a regional study of the anatomy as well as relevant gross pathology and histopathology. Our anatomical findings suggest that the VN may contribute to vascular thoracic outlet syndrome as well as the brachial plexopathy of neurogenic thoracic outlet syndrome. Further, the VN has the potential to cause compression of the phrenic nerve, contributing to unilateral phrenic neuropathy and subsequent dyspnea. Recognition of the Troisier sign/VN is of great clinical importance. Similarly, an appreciation of the anatomy surrounding the VN, and the potential for the enlarged node to encroach on neurovascular structures, is also important in the study of a patient. The presence of a Troisier sign/VN should be assessed when thoracic outlet syndrome and phrenic neuropathy are suspected. Conversely, when a VN is identified, the possibility of concomitant or subsequent thoracic outlet syndrome and phrenic neuropathy should be considered.


Subject(s)
Humans , Female , Aged , Phrenic Nerve , Thoracic Outlet Syndrome/etiology , Adenocarcinoma , Peripheral Nervous System Diseases/etiology , Lung Neoplasms , Lymph Nodes/pathology , Autopsy , Thoracic Outlet Syndrome/pathology , Fatal Outcome , Peripheral Nervous System Diseases/pathology
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