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1.
Biochemistry ; 61(14): 1456-1464, 2022 07 19.
Article in English | MEDLINE | ID: mdl-35786852

ABSTRACT

Here, we report a new phenomenon in which lysozyme fibrils formed in a solution of acetic acid spontaneously refold to a different polymorph through a disassembled intermediate upon the removal of acetic acid. The structural changes were revealed and characterized by deep-UV resonance Raman spectroscopy, nonresonance Raman spectroscopy, intrinsic tryptophan fluorescence spectroscopy, and atomic force microscopy. A PPII-like structure with highly solvent-exposed tryptophan residues predominates the intermediate aggregates before refolding to polymorph II fibrils. Furthermore, the disulfide (SS) bonds undergo significant rearrangements upon the removal of acetic acid from the lysozyme fibril environment. The main SS bond conformation changes from gauche-gauche-trans in polymorph I to gauche-gauche-gauche in polymorph II. Changing the hydrophobicity of the fibril environment was concluded to be the decisive factor causing the spontaneous refolding of lysozyme fibrils from one polymorph to another upon the removal of acetic acid. Potential biological implications of the discovered phenomenon are discussed.


Subject(s)
Amyloid , Muramidase , Amyloid/chemistry , Hydrophobic and Hydrophilic Interactions , Microscopy, Atomic Force , Muramidase/chemistry , Protein Folding , Tryptophan/chemistry
2.
J Chem Phys ; 155(17): 174703, 2021 Nov 07.
Article in English | MEDLINE | ID: mdl-34742208

ABSTRACT

Graphene is an ideal material for biosensors due to the large surface area for multiple bonding sites, the high electrical conductivity allowing for high sensitivity, and the high tensile strength providing durability in fabricated sensor devices. For graphene to be successful as a biosensing platform, selectivity must be achieved through functionalization with specific chemical groups. However, the device performance and sensor sensitivity must still be maintained after functionalization, which can be challenging. We compare phenyl amine and 1,5-diaminonaphthalene functionalization methods for chemical vapor deposition grown graphene, both used to obtain graphene modified with amine groups-which is required for surface attachment of highly selective antibody bio-receptors. Through atomic force microscopy (AFM), Raman spectroscopy, and time-of-flight secondary ion mass spectrometry imaging of co-located areas, the chemistry, thickness, and coverage of the functional groups bound to the graphene surface have been comprehensively analyzed. We demonstrate the modification of functionalized graphene using AFM, which unexpectedly suggests the removal of covalently bonded functional groups, resulting in a "recovered" graphene structure with reduced disorder, confirmed with Raman spectroscopy. This removal explains the decrease in the ID/IG ratio observed in Raman spectra from other studies on functionalized graphene after mechanical strain or a chemical reaction and reveals the possibility of reverting to the non-functionalized graphene structure. Through this study, preferred functionalization processes are recommended to maintain the performance properties of graphene as a biosensor.


Subject(s)
Biosensing Techniques , Graphite/chemistry , Organic Chemicals/chemistry , Amines/chemistry , Electric Conductivity , Microscopy, Atomic Force
3.
Appl Opt ; 54(5): 1146-51, 2015 Feb 10.
Article in English | MEDLINE | ID: mdl-25968033

ABSTRACT

In this study, a technique for measuring the grating visibility of the fiber Bragg grating (FBG) based on bent-spectral analysis is proposed. From varying ac and dc coupling coefficients at different bending radii, the grating visibility is estimated with the aid of a simple mathematical model. The investigation begins with the estimation of the grating visibility from the transmission spectra of the FBG during the inscription process. After that, the FBGs are subjected to a bending test with reducing radii, and again the transmission spectra are recorded. It is shown that the estimated grating visibility is in agreement with the result determined from the earlier inscription process.

4.
Opt Lett ; 38(21): 4409-12, 2013 Nov 01.
Article in English | MEDLINE | ID: mdl-24177106

ABSTRACT

This Letter presents a simple mathematical model developed from coupled-mode theory to describe the relationship between Bragg transmission loss (BTL), grating length, coupling coefficients, and bending loss in a bent fiber Bragg grating. In our investigation, the finding indicates that the decrement of BTL can be attributed to the increasing bending loss and degradation of both dc and ac coupling coefficients as the bending radius decreases. Besides, the center wavelength shifts as a result of coupling coefficients degradation. The validity of the proposed model is supported by experimental result.

5.
Cureus ; 13(4): e14647, 2021 Apr 23.
Article in English | MEDLINE | ID: mdl-34046279

ABSTRACT

This survey-based analysis aims to highlight key limitations to a wider adoption of coronary artery calcium (CAC) scoring as a means of screening asymptomatic individuals for atherosclerotic cardiovascular disease. The need for a screening tool that adds objective anatomical information to historically established risk scores in the aforementioned population has been met by this imaging modality. Despite that, there has been a hesitance towards frequent usage of these scans. Within the pre-set sampling frame of the University of Toledo, a convenience sampling technique was used to reach out to 60 health care providers. The resultant responses were analyzed and discussed. In addition to identifying patients who need to be worked up further, CAC scans can also help re-stratify patients within-risk groups and inform decision-making regarding the use of lipid-lowering therapies. The public health impact of a greater but appropriate utilization of this diagnostic tool will be impactful. This analysis seeks to better understand real-life obstacles to a wider adoption of these scans and attempts to lay out policy recommendations to address these issues.

6.
PLoS One ; 16(5): e0250210, 2021.
Article in English | MEDLINE | ID: mdl-33961648

ABSTRACT

It is already known that there are many factors responsible for the successful grafting process in plants, including light intensity. However, the influence of the spectrum of light-emitting diodes (LEDs) on this process has almost never been tested. During the pre-grafting process tomato seedlings grew for 30 days under 100 µmol m-2 s-1 of mixed LEDs (red 70%+ blue 30%). During the post-grafting period, seedlings grew for 20 days under the same light intensity but the lightening source was either red LED, mixed LEDs (red 70% + blue 30%), blue LED or white fluorescent lamps. This was done to determine which light source(s) could better improve seedling quality and increase grafting success. Our results showed that application of red and blue light mixture (R7:B3) caused significant increase in total leaf area, dry weight (total, shoot and root), total chlorophyll/carotenoid ratio, soluble protein and sugar content. Moreover, this light treatment maintained better photosynthetic performance i.e. more effective quantum yield of PSII photochemistry Y(II), better photochemical quenching (qP), and higher electron transport rate (ETR). This can be partially explained by the observed upregulation of gene expression levels of PsaA and PsbA and the parallel protein expression levels. This in turn could lead to better functioning of the photosynthetic apparatus of tomato seedlings and then to faster production of photoassimilate ready to be translocated to various tissues and organs, including those most in need, i.e., involved in the formation of the graft union.


Subject(s)
Light , Plant Breeding , Seedlings/physiology , Seedlings/radiation effects , Solanum lycopersicum/physiology , Solanum lycopersicum/radiation effects , Chlorophyll/metabolism , Solanum lycopersicum/growth & development , Solanum lycopersicum/metabolism , Photosynthesis/radiation effects , Plant Leaves/metabolism , Plant Leaves/radiation effects , Seedlings/growth & development
7.
PLoS One ; 16(4): e0249373, 2021.
Article in English | MEDLINE | ID: mdl-33858008

ABSTRACT

It is already known that the process of photosynthesis depends on the quality and intensity of light. However, the influence of the new light sources recently used in horticulture, known as Light Emitting Diodes (LEDs), on this process is not yet fully understood. Chlorophyll a fluorescence measurement has been widely used as a rapid, reliable, and noninvasive tool to study the efficiency of the photosystem II (PSII) and to evaluate plant responses to various environmental factors, including light intensity and quality. In this work, we tested the responses of the tomato photosynthetic apparatus to different light spectral qualities. Our results showed that the best performance of the photosynthetic apparatus was observed under a mixture of red and blue light (R7:B3) or a mixture of red, green and blue light (R3:G2:B5). This was demonstrated by the increase in the effective photochemical quantum yield of PSII (Y[II]), photochemical quenching (qP) and electron transport rate (ETR). On the other hand, the mixture of red and blue light with a high proportion of blue light led to an increase in non-photochemical quenching (NPQ). Our results can be used to improve the production of tomato plants under artificial light conditions. However, since we found that the responses of the photosynthetic apparatus of tomato plants to a particular light regime were cultivar-dependent and there was a weak correlation between the growth and photosynthetic parameters tested in this work, special attention should be paid in future research.


Subject(s)
Light , Photosynthesis/radiation effects , Solanum lycopersicum/radiation effects , Chlorophyll A/analysis , Humidity , Solanum lycopersicum/growth & development , Solanum lycopersicum/metabolism , Photosystem II Protein Complex/metabolism , Seedlings/growth & development , Seedlings/radiation effects , Spectrometry, Fluorescence , Temperature
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