Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 40
Filter
Add more filters

Country/Region as subject
Affiliation country
Publication year range
1.
Cell Mol Neurobiol ; 42(7): 2219-2234, 2022 Oct.
Article in English | MEDLINE | ID: mdl-33978861

ABSTRACT

Glial dysfunction outraging CNS plasticity and integrity results in one of the most dangerous cancers, namely glioma, featuring little median survival period and high recurrence. The hallmark properties of proliferation, invasion and angiogenesis with the infiltrated macrophages in glioma are expected to be tightly coupled or cross-linked, but not properly related so far. The present study is aimed to find a relationship between this featured quadrangle from lower to higher grades (HG) of post-operative glioma tissues and their invading subsets. Elevated Ki67-associated proliferation in lower grades (LG) was supported with VEGF dependent angiogenic maintenance which found a decrease unlikely in HG. In contrast, MMP 2 and 9-associated invasions augmented high in HG with the dominant presence of CD204+ M2 polarized macrophages and a general increase in global DNMT1-associated methylation. Marked differences found in ECM invading cellular subsets of HG showing high proliferative capacity indicating rationally for recurrence, contrasting the nature of gross tumor tissue of the same grade. Thus in LG, the neoplastic lesion is more inclined to its growth while in higher grade more disposed towards tissue wreckage in support with cellular environmental milieu whereas the cellular variants and subsets of invaded cells showed different trends. Therefore, some operational dichotomy or coupling among cellular variants in glioma is active in determining its low- to high-grade transition and aggressive progression.


Subject(s)
Brain Neoplasms , Glioma , Humans , Macrophages , Neoplasm Invasiveness , Neovascularization, Pathologic
2.
J Med Virol ; 93(3): 1428-1435, 2021 03.
Article in English | MEDLINE | ID: mdl-32779784

ABSTRACT

The pandemic COVID-19 outbreak has been caused due to SARS-CoV-2 pathogen, resulting in millions of infections and deaths worldwide, the United States being on top at the present moment. The long, complex orf1ab polyproteins of SARS-CoV-2 play an important role in viral RNA synthesis. To assess the impact of mutations in this important domain, we analyzed 1134 complete protein sequences of the orf1ab polyprotein from the NCBI virus database from affected patients across various states of the United States from December 2019 to 25 April 2020. Multiple sequence alignment using Clustal Omega followed by statistical significance was calculated. Four significant mutations T265I (nsp 2), P4715L (nsp 12), and P5828L and Y5865C (both at nsp 13) were identified in important nonstructural proteins, which function either as replicase or helicase. A comparative analysis shows 265 T→I, 5828 P→L, and 5865Y→C are unique to the United States and not reported from Europe or Asia; while one, 4715 P→L is predominant in both Europe and the United States. Mutational changes in amino acids are predicted to alter the structure and function of the corresponding proteins, thereby, it is imperative to consider the mutational spectra while designing new antiviral therapeutics targeting viral orf1ab.


Subject(s)
COVID-19/virology , Mutation , SARS-CoV-2/genetics , Viral Proteins/genetics , Amino Acid Substitution , Coronavirus RNA-Dependent RNA Polymerase/chemistry , Coronavirus RNA-Dependent RNA Polymerase/genetics , Humans , Polyproteins/chemistry , Polyproteins/genetics , Protein Conformation , United States , Viral Nonstructural Proteins/chemistry , Viral Nonstructural Proteins/genetics , Viral Proteins/chemistry
3.
Nutr Cancer ; 73(11-12): 2447-2459, 2021.
Article in English | MEDLINE | ID: mdl-33030063

ABSTRACT

Tea is the most popularly consumed beverage in the world. Theaflavin and thearubigins are the key bioactive compounds of black tea that have anticarcinogenic properties as reported in several studies. However, the epigenetic potential of these compounds has not yet been explored. DNA methyltransferase (DNMT) enzymes induce methylation of DNA at cytosine residues and play a significant role in epigenetic regulation and cancer therapy. The present study has explored the role of black tea as a DNMT inhibitor in the prevention of cancer. Herein, the effect of theaflavin has been studied in colon cancer cell line (HCT-116) and EAC-induced solid tumors in mice. It was found that theaflavin prevented cell proliferation and inhibited tumor progression as well. In silico study showed that theaflavin interacted with DNMT1 and DNMT3a enzymes and blocked their activity. Theaflavin also decreased DNMT activity In Vitro and In Vivo as evident from the DNMT activity assay. Results of immunohistochemistry revealed that theaflavin reduced DNMT expression in the tumors of mice. Taken together, our findings showed that theaflavin has a potential role as a DNMT inhibitor in HCT-116 cell line and EAC induced solid tumors in mice.


Subject(s)
Biflavonoids , Carcinoma , Catechin , Colonic Neoplasms , Animals , Ascites , Biflavonoids/pharmacology , Catechin/pharmacology , Colonic Neoplasms/drug therapy , Epigenesis, Genetic , Humans , Mice , Plant Extracts/pharmacology , Tea/chemistry
4.
Environ Res ; 198: 111184, 2021 07.
Article in English | MEDLINE | ID: mdl-33894237

ABSTRACT

Methylation of arsenic compounds in the human body occurs following a series of biochemical reactions in the presence of methyl donor S-adenosylmethionine (SAM) and catalyzed by arsenite methyltransferase (AS3MT). However, the extent and pattern of methylation differs among the arsenic exposed individuals leading to differential susceptibility. The mechanism for such inter-individual difference is enigmatic. In the present case-control study we recruited exposed individuals with and without arsenic induced skin lesion (WSL and WOSL), and an unexposed cohort, each having 120 individuals. Using ELISA, we observed a reduction in SAM levels (p < 0.05) in WSL compared to WOSL. Linear regression analysis revealed a negative correlation between urinary arsenic concentration and SAM concentration between the study groups. qRT-PCR revealed a significant down-regulation (p < 0.01) of key regulatory genes like MTHFR, MTR, MAT2A and MAT2B of SAM biogenesis pathway in WSL cohort. Methylation-specific PCR revealed significant promoter hypermethylation of AS3MT (WSL vs. WOSL: p < 0.01) which resulted in its subsequent transcriptional repression (WSL vs. WOSL: p < 0.001). Linear regression analysis also showed a negative correlation between SAM concentration and percentage of promoter methylation. Taken together, these results indicate that reduction in SAM biogenesis along with a higher utilization of SAM results in a decreased availability of methyl donor. These along with epigenetic down-regulation of AS3MT may be responsible for higher susceptibility in arsenic exposed individuals.


Subject(s)
Arsenic , Arsenic/toxicity , Case-Control Studies , Humans , India , Methyltransferases/genetics , S-Adenosylmethionine
5.
Ecotoxicol Environ Saf ; 202: 110962, 2020 Oct 01.
Article in English | MEDLINE | ID: mdl-32800233

ABSTRACT

Chronic exposure to fluoride (F) beyond the permissible limit (1.5 ppm) is known to cause detrimental health effects by induction of oxidative stress-mediated DNA damage overpowering the DNA repair machinery. In the present study, we assessed F induced oxidative stress through monitoring biochemical parameters and looked into the effect of chronic F exposure on two crucial DNA repair genes Ogg1 and Rad51 having important role against ROS induced DNA damages. To address this issue, we exposed Swiss albino mice to an environmentally relevant concentration of fluoride (15 ppm NaF) for 8 months. Results revealed histoarchitectural damages in liver, brain, kidney and spleen. Depletion of GSH, increase in lipid peroxidation and catalase activity in liver and brain confirmed the generation of oxidative stress. qRT-PCR result showed that expressions of Ogg1 and Rad51 were altered after F exposure in the affected organs. Promoter hypermethylation was associated with the downregulation of Rad51. F-induced DNA damage and the compromised DNA repair machinery triggered intrinsic pathway of apoptosis in liver and brain. The present study indicates the possible association of epigenetic regulation with F induced neurotoxicity.


Subject(s)
DNA Damage , DNA Glycosylases/genetics , DNA Repair , Epigenesis, Genetic/drug effects , Fluorides/toxicity , Rad51 Recombinase/genetics , Animals , Apoptosis/drug effects , Brain/drug effects , Brain/metabolism , Brain/pathology , Dose-Response Relationship, Drug , Liver/drug effects , Liver/metabolism , Liver/pathology , Male , Mice , Oxidative Stress/drug effects
6.
Environ Geochem Health ; 42(10): 3157-3170, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32193807

ABSTRACT

Human hair is considered as a potential biowaste worldwide, and improper disposal of hair can create multiple environmental problems. Due to unique characteristic features, human waste hair can be efficiently utilized for versatile applications, from agricultural industries to fashion industries. There is a huge business of human hair in many multinational countries and also in some rural areas of India. The continuous demand of such keratinous waste for human need in turn is producing residual waste at an alarming rate that causes environmental degradation. Therefore, our study aims to investigate the possible impacts of waste hair reprocessing activity on environmental health in rural India, citing examples from Radhapur village. Physico-chemical parameters of pond water and soil from the dumpsite were assessed. Along with this, elemental profile of waste hair, pond water and soil was estimated. To assess the deterioration of water quality, zooplankton diversity was also measured. Water quality index showed that the studied ponds are unsuitable for drinking purpose and aquaculture. The Shannon index further indicated comparatively lower diversity of zooplankton community in the studied ponds. Due to the presence of total organic carbon and available N-P-K, the soil can sustain the growth and survival of plants; however, the risk of toxic metal accumulation may be persisted. Hence, to enhance the utilization of waste hair in a large scale, a policy framework is extremely required that will incorporate environmental and social well-being and provide necessary support towards sustainable development. Future study needs to be carried out to eliminate the toxic elements from the water and soil using some phytoremediation strategies.


Subject(s)
Environmental Health , Environmental Monitoring , Hair/chemistry , Industrial Waste/analysis , Ponds/chemistry , Soil/chemistry , Zooplankton/physiology , Animals , Barbering , Biodiversity , Environmental Pollution/analysis , Humans , India , Water Pollution/analysis , Water Quality , Zooplankton/drug effects
7.
Environ Res ; 163: 289-296, 2018 05.
Article in English | MEDLINE | ID: mdl-29499398

ABSTRACT

INTRODUCTION: Arsenic exposure and its adverse health outcome, including the association with cancer risk are well established from several studies across the globe. The present study aims to analyze the epigenetic regulation of key mismatch repair (MMR) genes in the arsenic-exposed population. METHOD: A case-control study was conducted involving two hundred twenty four (N=224) arsenic exposed [with skin lesion (WSL=110) and without skin lesion (WOSL=114)] and one hundred and two (N=102) unexposed individuals. The methylation status of key MMR genes i.e. MLH1, MSH2, and PMS2 were analyzed using methylation-specific PCR (MSP). The gene expression was studied by qRTPCR. The expression of H3K36me3, which was earlier reported to be an important regulator of MMR pathway, was assessed using ELISA. RESULTS: Arsenic-exposed individuals showed significant promoter hypermethylation (p < 0.0001) of MLH1 and MSH2 compared to those unexposed with consequent down-regulation in their gene expression [MLH1 (p=0.001) and MSH2 (p<0.05)]. However, no significant association was found in expression and methylation of PMS2 with arsenic exposure. We found significant down-regulation of H3K36me3 in the arsenic-exposed group, most significantly in the WSL group (p<0.0001). The expression of SETD2, the methyltransferase of an H3K36me3 moiety was found to be unaltered in arsenic exposure, suggesting the involvement of other regulatory factors yet to be identified. DISCUSSION: In summary, the epigenetic repression of DNA damage repair genes due to promoter hypermethylation of MLH1 and MSH2 and inefficient recruitment of MMR complex at the site of DNA damage owing to the reduced level of H3K36me3 impairs the mismatch repair pathway that might render the arsenic-exposed individuals more susceptible towards DNA damage and associated cancer risk.


Subject(s)
Arsenic , DNA Mismatch Repair , Epigenesis, Genetic , Adult , Arsenic/toxicity , Case-Control Studies , DNA Mismatch Repair/drug effects , Female , Humans , India , Male , Middle Aged , Mismatch Repair Endonuclease PMS2 , MutL Protein Homolog 1
8.
Biochim Biophys Acta Gen Subj ; 1861(11 Pt A): 2598-2608, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28844980

ABSTRACT

BACKGROUND: A and B-type lamins are integral scaffolding components of the nuclear lamina which impart rigidity and shape to all metazoan nuclei. Over 450 mutations in A-type lamins are associated with 16 human diseases including dilated cardiomyopathy (DCM). Here, we show that DCM mutants perturb the self-association of lamin A (LA) and it's binding with lamin B1 (LB1). METHODS: We used confocal and superresolution microscopy (NSIM) to study the effect of LA mutants on the nuclear lamina. We further used circular dichroism, fluorescence spectroscopy and isothermal titration calorimetry (ITC) to probe the structural modulations, self-association and heteropolymeric association of mutant LA. RESULTS: Transfection of mutants in cultured cell lines result in the formation of nuclear aggregates of varied size and distribution. Endogenous LB1 is sequestered into these aggregates. This is consistent with the ten-fold increase in association constant of the mutant proteins compared to the wild type. These mutants exhibit differential heterotypic interaction with LB1, along with significant secondary and tertiary structural alterations of the interacting proteins. Thermodynamic studies demonstrate that the mutants bind to LB1 with different stoichiometry, affinity and energetics. CONCLUSIONS: In this report we show that increased self-association propensity of mutant LA modulates the LA-LB1 interaction and precludes the formation of an otherwise uniform laminar network. GENERAL SIGNIFICANCE: Our results might highlight the role of homotypic and heterotypic interactions of LA in the pathogenesis of DCM and hence laminopathies in the broader sense.


Subject(s)
Cardiomyopathy, Dilated/genetics , Lamin Type A/chemistry , Lamin Type B/chemistry , Protein Interaction Maps/genetics , Cardiomyopathy, Dilated/pathology , Cell Nucleus/chemistry , Cell Nucleus/genetics , Humans , Lamin Type A/genetics , Lamin Type B/genetics , Microscopy, Confocal , Mutant Proteins/chemistry , Mutant Proteins/genetics , Protein Binding , Protein Conformation
9.
Biometals ; 30(4): 505-515, 2017 08.
Article in English | MEDLINE | ID: mdl-28516305

ABSTRACT

Global methylation pattern regulates the normal functioning of a cell. Research have shown arsenic alter these methylation landscapes within the genome leading to aberrant gene expression and inducts various pathophysiological outcomes. Long interspersed nuclear elements (LINE-1) normally remains inert due to heavy methylation of it's promoters, time and various environmental insults, they lose these methylation signatures and begin retro-transposition that has been associated with genomic instability and cancerous outcomes. Of the various high throughput technologies available to detect global methylation profile, development of LINE-1 methylation index shall provide a cost effect-screening tool to detect epimutagenic events in the wake of toxic exposure in a large number of individuals. In the present review, we tried to discuss the state of research and whether LINE-1 methylation can be considered as a potent epigenetic signature for arsenic toxicity.


Subject(s)
Arsenic Poisoning/genetics , Arsenic/toxicity , Environmental Exposure/adverse effects , Epigenesis, Genetic , Long Interspersed Nucleotide Elements , Neoplasms/genetics , Arsenic Poisoning/metabolism , Cell Transformation, Neoplastic/genetics , Cell Transformation, Neoplastic/metabolism , Cell Transformation, Neoplastic/pathology , CpG Islands , DNA Methylation , Folic Acid/metabolism , Genome, Human , Humans , Neoplasms/chemically induced , Neoplasms/metabolism , Neoplasms/pathology , Promoter Regions, Genetic , S-Adenosylmethionine/metabolism
10.
Environ Res ; 147: 425-34, 2016 May.
Article in English | MEDLINE | ID: mdl-26966890

ABSTRACT

BACKGROUND: Epidemiological studies suggest strong association of lung disorders with occupational exposure to asbestos, silicon and arsenic. The chronic occupational exposure primarily through inhalation results in adverse outcome on the respiratory tract which may also be fatal. Although several mechanisms have attributed towards these diseases; the molecular pathogenesis is still unknown. OBJECTIVE: In this review, we investigated the plausible molecular mechanism based on current research that may identify the genetic and epigenetic susceptibility of respiratory disorders upon such occupational exposures in humans. METHODS: We considered genetic variants and epigenetic alterations associated with pulmonary exposure hazards leading to asbestosis, silicosis and arsenicosis. Our review is stringently based on the literatures available through peer-reviewed articles mostly published in the last 10 years. Relevant search were conducted using keywords like "occupational lung disorders" along with "asbestos", "silicon" and "arsenic". RESULTS: Till September 2015, pubmed search yielded approximately 780 articles relating to asbestos exposure; 240 articles for silicon exposure and 60 articles for arsenic exposure. Extensive screening for genetic and epigenetic factors identified certain genes and related pathways that are important to determine the susceptibility of an individual towards such occupational exposure. CONCLUSION: The link between genotype and phenotype and its association with disease susceptibility is very complex in nature due to several factors like person's environment, lifestyle and nutritional status. The epigenome is dynamic as well as reversible and can be reshaped further by certain dietary components throughout its life. In the present review, we have addressed the role of molecular pathogenesis of occupational lung diseases based on the genetic variability and epigenetic alterations and also attempted to highlight the promising aspect of dietary interventions to counter toxic outcomes upon occupational exposure to asbestos, silicon or arsenic.


Subject(s)
Arsenic/toxicity , Asbestos/toxicity , Lung Diseases/genetics , Occupational Exposure/adverse effects , Silicon/toxicity , Animals , Genetic Predisposition to Disease , Humans
11.
Mol Carcinog ; 54(9): 800-9, 2015 Sep.
Article in English | MEDLINE | ID: mdl-24665044

ABSTRACT

Arsenic (As) induces pre-malignant and malignant dermatological lesions, non-dermatological health effects and cancers in humans. Senescence involves telomere length changes and acquisition of senescence-associated secretory phenotype (SASP), which promotes carcinogenesis. Though in vitro studies have shown that As induces senescence, population based studies are lacking. We investigated the arsenic-induced senescence, telomere length alteration and its contribution towards development of As-induced skin cancer. The study participants included 60 each of As-exposed individuals with skin lesion (WSL), without skin lesions (WOSL) and 60 unexposed controls. Exposure assessment of drinking water and urine was done. SA ß-gal activity, ELISA, and quantification of senescence proteins, alternative lengthening of telomere (ALT) associated proteins and telomerase activity were performed. Relative telomere length (RTL) was determined by qPCR. A significantly higher number of senescent cells, over-expression of p53 and p21 were observed in the As-exposed individuals when compared to unexposed. SASP markers, MMP-1/MMP-3 were significantly higher in the WSL but not IL-6/IL-8. A significant increase of RTL was observed in the WSL group, which was telomerase-independent but exhibited an over-expression of ALT associated proteins TRF-1 and TRF-2 with higher increase in TRF-2. An increased risk for developing As-induced skin lesions was found for individuals having RTL greater than 0.827 (odds ratio, 13.75; 95% CI: 5.66-33.41; P < 0.0001). Arsenic induces senescence in vivo, but the SASP markers are not strictly over-expressed in the As-induced skin lesion group, whereas telomerase-independent elongation of telomere length might be useful for predicting the risk of development of As-induced skin lesions.


Subject(s)
Aging/drug effects , Arsenic/toxicity , Drinking Water/adverse effects , Telomere/drug effects , Water Pollutants, Chemical/toxicity , Adult , Carcinogenesis/chemically induced , Carcinogenesis/metabolism , Carcinogenesis/pathology , Case-Control Studies , Drinking Water/analysis , Female , Humans , India/epidemiology , Male , Middle Aged , Signal Transduction/drug effects , Skin/drug effects , Skin/metabolism , Skin/pathology , Skin Diseases/chemically induced , Skin Diseases/epidemiology , Skin Diseases/metabolism , Skin Diseases/pathology , Telomerase/metabolism , Telomere/pathology , Tumor Suppressor Protein p53/metabolism
12.
Biochim Biophys Acta Gene Regul Mech ; 1867(1): 195007, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38237857

ABSTRACT

Telomere integrity is required for the maintenance of genome stability and prevention of oncogenic transformation of cells. Recent evidence suggests the presence of epigenetic modifications as an important regulator of mammalian telomeres. Telomeric and subtelomeric regions are rich in epigenetic marks that regulate telomere length majorly through DNA methylation and post-translational histone modifications. Specific histone modifying enzymes play an integral role in establishing telomeric histone codes necessary for the maintenance of structural integrity. Alterations of crucial histone moieties and histone modifiers cause deregulations in the telomeric chromatin leading to carcinogenic manifestations. This review delves into the significance of histone modifications and their influence on telomere dynamics concerning cancer. Additionally, it highlights the existing research gaps that hold the potential to drive the development of therapeutic interventions targeting the telomere epigenome.


Subject(s)
Epigenesis, Genetic , Histones , Animals , Histones/metabolism , Histone Code/genetics , Telomere/genetics , Telomere/metabolism , Carcinogenesis/genetics , Mammals/genetics
13.
Sci Total Environ ; 912: 169049, 2024 Feb 20.
Article in English | MEDLINE | ID: mdl-38052388

ABSTRACT

Chronic exposure to arsenic causes adverse health effects in children. Aberrant epigenetic modifications including altered DNA methylation pattern are one of the major steps towards malignant transformation of cells. Our group has previously identified significant alteration in DNA methylation mark in arsenic exposed adults, affecting major biological pathways. Till date, no information is available exploring the altered DNA methylation mark in telomere regulation and altered mitochondrial functionality in association with DNA damage in arsenic-exposed children. Our study aims in identifying signature epigenetic pattern associated with telomere lengthening, mitochondrial functionality and DNA damage repair in children with special emphasis on DNA methylation. Biological samples (blood and urine) and drinking water were collected from the children aged between 5 and 16 years of arsenic exposed areas (N = 52) of Murshidabad district and unexposed areas (N = 50) of East Midnapur districts, West Bengal, India. Methylation-specific PCR was performed to analyse subtelomeric methylation status and promoter methylation status of target genes. Results revealed altered DNA methylation profile in the exposed children compared to unexposed. Promoter hypermethylation was observed in MLH1 and MSH2 (p < 0.05 and p < 0.001) indicating inefficiency in DNA damage repair. Hypomethylation in mitochondrial D-loop (p < 0.05) and TFAM promoter region (p < 0.05) along with increased mitochondrial DNA copy number among exposed children was also observed. Significant increase in telomere length and region specific subtelomeric hypermethylation (XpYp, p < 0.05) was found. Analysis of S-Adenosyl Methionine (SAM) and 8-oxoDG level revealed significant depletion of SAM (p < 0.001) and elevated oxidative DNA damage (p < 0.001) respectively in arsenic toxicity. Our study identified key methylation patterns in arsenic-exposed children which may act as an early predictive biomarker in the near future. Further in-depth studies involving large sample size and transcriptomic analysis are required for understanding the mechanistic details.


Subject(s)
Arsenic Poisoning , Arsenic , Adolescent , Child , Child, Preschool , Humans , Arsenic/toxicity , Arsenic/analysis , Arsenic Poisoning/genetics , Cell Transformation, Neoplastic/chemically induced , DNA Methylation , Epigenesis, Genetic
14.
Biochemistry ; 52(24): 4229-41, 2013 Jun 18.
Article in English | MEDLINE | ID: mdl-23701190

ABSTRACT

Lamin A protein, encoded by the LMNA gene, belongs to the type V intermediate filament protein family and is a major nuclear protein component of higher metazoan organisms, including humans. Lamin A along with B-type lamins impart structural rigidity to the nucleus by forming a lamina that is closely apposed to the inner nuclear membrane and is also present as a filamentous network in the interior of the nucleus. A vast number of mutations that lead to a diverse array of at least 11 diseases in humans, collectively termed laminopathies, are being gradually uncovered in the LMNA gene. Dilated cardiomyopathy (DCM) is one such laminopathy in which ventricular dilation leads to an increase in systolic and diastolic volumes, resulting in cardiac arrhythmia and ultimately myocardial infarction. The point mutations in lamin A protein span the entire length of the protein, with a slight preponderance in the central α-helical coiled-coil forming domain. In this work, we have focused on three such important mutations that had been previously observed in DCM-afflicted patients producing severe symptoms. This is the first report to show that these mutations entail significant alterations in the secondary and tertiary structure of the protein, hence perturbing the intrinsic self-association behavior of lamin A protein. Comparison of the enthalpy changes accompanying the deoligomerization process for the wild type and the mutants suggests a difference in the energetics of their self-association. This is further corroborated by the formation of the aggregates of different size and distribution formed inside the nuclei of transfected cells.


Subject(s)
Cardiomyopathy, Dilated/metabolism , Gene Expression Regulation , Lamin Type A/chemistry , Cell Nucleus/metabolism , Diastole , HeLa Cells , Humans , Hydrophobic and Hydrophilic Interactions , Lamin Type A/genetics , Lamin Type A/metabolism , Lamins/metabolism , Microscopy, Fluorescence , Mutagenesis, Site-Directed , Mutation , Nuclear Envelope/metabolism , Protein Structure, Secondary , Protein Structure, Tertiary , Systole
15.
Biometals ; 26(5): 855-62, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23907726

ABSTRACT

Chronic exposure to arsenic through drinking water affects nearly 26 million individuals in West Bengal, India. Cytogenetic biomarkers like urothelial micronucleus (MN) are extensively used to monitor arsenic exposed population. In 2004-2005, 145 arsenic exposed individuals and 60 unexposed controls were surveyed of which 128 exposed individuals and 54 unexposed controls could be followed up in 2010-2011. In 2004-2005, the extent of arsenic content in the drinking water was 348.23 ± 102.67 µg/L, which was significantly lowered to 5.60 ± 10.83 µg/L in 2010-2011. Comparing the data obtained between 2004-2005 and 2010-2011, there was a significant decline in the MN frequency, when assayed in 2010-2011 compared to 2004-2005. Hence, we infer that urothelial MN can be utilized as a good biomarker in detecting remedial effects from toxicity of the low dose of arsenic through drinking water.


Subject(s)
Arsenic/adverse effects , Arsenic/analysis , Drinking Water/chemistry , Micronuclei, Chromosome-Defective/drug effects , Urothelium/pathology , Water Pollutants, Chemical/analysis , Water Pollutants, Chemical/poisoning , Adult , Arsenic/urine , Arsenic Poisoning/diagnosis , Arsenic Poisoning/prevention & control , Arsenic Poisoning/urine , Biomarkers/analysis , Cohort Studies , Female , Humans , India , Male , Micronucleus Tests , Urothelium/drug effects , Water Pollutants, Chemical/urine
16.
Mutat Res ; 755(1): 1-5, 2013 Jul 04.
Article in English | MEDLINE | ID: mdl-23644288

ABSTRACT

Prolonged consumption of arsenic-laden water above the threshold limit of 10µg/L causes a plethora of dermatological and non-dermatological multi-organ health problems, including cancer and death. Among several mechanisms of arsenic-induced toxicity and carcinogenicity studied so far, role of arsenic in impairment of immune system is less understood. Epidemiological data, animal model as well as cell line based studies have indicated that arsenic targets immune system and is associated with characteristic immunosupression, which may further adversely affect respiratory function. However, to the best of our knowledge, there is no study with respect to arsenic susceptibility investigating the role of genetic variation having immunological function. Hence, we have recruited a total of 432 arsenic-exposed individuals, of which 219 individuals with characteristic arsenic-induced skin lesions (cases) and 213 individuals without arsenic-induced skin lesion(controls), from arsenic-exposed districts of West Bengal, India. To find any probable association between arsenicism and the exonic single nucleotide polymorphisms (SNPs) in NALP2 gene, an important component of inflammasome complex, we screened the entire coding region (exon) in all the study participants. Among 9 SNPs found in NALP2 gene, the A1052E polymorphism (at least with one minor allele), was significantly overrepresented in controls and hence implies decreased risk toward the development of skin lesions [OR=0.67, 95% CI: 0.46-0.97]. Since, development of non-dermatological health effects are also important factor to properly look into, we have attempted to correlate the genetic variation of NALP2 with the extent of cytogenetic damage as measured by chromosomal aberration assay and adverse health effects including peripheral neuropathy, eye problem and respiratory diseases in the study population. We observed individuals with the protective genotype had less chromosomal aberration (p<0.05), and were also less susceptible toward arsenic-related respiratory diseases [OR=0.47; 95%CI: 0.23-0.89]. These findings suggest that NALP2 A1052E SNP plays an important role toward development of arsenic-induced skin lesions, chromosomal damage and respiratory diseases.


Subject(s)
Adaptor Proteins, Signal Transducing/genetics , Arsenic Poisoning/complications , Arsenic/adverse effects , Eye Diseases/genetics , Peripheral Nervous System Diseases/genetics , Polymorphism, Single Nucleotide/genetics , Respiratory Distress Syndrome/genetics , Skin Diseases/genetics , Adult , Apoptosis Regulatory Proteins , Arsenic Poisoning/genetics , Case-Control Studies , Chromosome Aberrations , Eye Diseases/chemically induced , Eye Diseases/epidemiology , Female , Genetic Predisposition to Disease , Genotype , Humans , India/epidemiology , Male , Peripheral Nervous System Diseases/chemically induced , Peripheral Nervous System Diseases/epidemiology , Prognosis , Respiratory Distress Syndrome/chemically induced , Respiratory Distress Syndrome/epidemiology , Skin Diseases/chemically induced , Skin Diseases/epidemiology
17.
IEEE Trans Nanobioscience ; 22(2): 383-392, 2023 04.
Article in English | MEDLINE | ID: mdl-35895661

ABSTRACT

Arsenic is a carcinogen, and long-term exposure to it may result in the development of multi-organ disease. Understanding the underlying intricate molecular network of toxicity and carcinogenicity is crucial for identifying a small set of differentially expressed biomarker genes to predict the risk of the exposed population. In this paper, a multiple kernel learning (MKL) embedded multi-objective swarm intelligence technique has been proposed to identify the candidate biomarker genes from the transcriptomic profile of arsenicosis samples. To achieve the optimal classification accuracy along with the minimum number of genes, a multi-objective random spatial local best particle swarm optimization (MO-RSplbestPSO) has been utilized. The proposed MO-RSplbestPSO also guides the multiple kernel learning mechanism which provides data specific classification. The proposed computational framework has been applied to the developed whole genome DNA microarray prepared using blood samples collected from a specific arsenic exposed area of the Indian state of West Bengal. A set of twelve biomarker genes, with four novel genes, are successfully identified for the classification of exposure to arsenic and its subcategories, which can be used as future prognostic biomarkers for screening of arsenic exposed populations. Also, the biological significance of each gene is detailed to delineate the complex molecular networking and mode of toxicity.


Subject(s)
Arsenic , Intelligence , Biomarkers , Algorithms
18.
Sci Rep ; 13(1): 12476, 2023 08 01.
Article in English | MEDLINE | ID: mdl-37528155

ABSTRACT

Menstruation is a natural phenomenon for every female, starting from adolescents to menopausal age. Any disturbances in menstrual patterns can eventually affect one's physical as well as psychological health which in turn hamper the quality of life of women. Several factors including genetic predisposition as well as lifestyle modifications adversely affect normal menstrual patterns. Hence, this study aims to evaluate the prevalence of menstrual disorders among adolescents and young women as well as the associated risk factors. A cross-sectional random survey was conducted from January 2020 to January 2022 in various schools and colleges. A structured questionnaire was prepared which include anthropometric details, demographic information, and lifestyle patterns. The data were extracted for further statistical analysis. In the overall study population, the prevalence of PCOS, Dysmenorrhea, Menorrhagia, Polymenorrhea, Hypomenorrhea and the irregular menstrual cycle was found at 14.14%, 15.14%, 6.29%, 3.70%, 5.16% and 44.83% respectively. The mean BMI of the study population was 19.949 ± 4.801 kg/m2 and the mean WHr was 0.872 ± 0.101, indicating a moderate to high risk of metabolic disorder among the study population. Increased BMI, short sleep, and sedentary and vigorous physical activity can contribute to the risk of developing menstrual disorders. Unhealthy food habits are a major risk factor for menstrual disorders. Lifestyle modifications like healthy food habits, sleeping patterns, physical activity, etc. can effectively reduce the risk of menstrual disorders and also cut down the severity of more complex health problems. In-depth biochemical and molecular analysis is required to identify specific biomarkers.


Subject(s)
Menstruation Disturbances , Quality of Life , Female , Humans , Adolescent , Cross-Sectional Studies , Menstruation Disturbances/epidemiology , Dysmenorrhea/epidemiology , Surveys and Questionnaires , Life Style , Prevalence
19.
J Trace Elem Med Biol ; 75: 127103, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36435151

ABSTRACT

BACKGROUND: Arsenic toxicity is one of the major health issues throughout the world. Approximately 108 countries that account for more than 230 million people worldwide are at high risk of arsenic poisoning mainly through drinking water and diet. Chronic exposure to arsenic causes several pathophysiological end-points including skin lesions, peripheral neuropathy, cancer, etc. In India, the population living in the lower Gangetic basin possesses a great risk of arsenicosis and other diseases. Scientists are trying to understand the gene-environmental interactions behind arsenic toxicity revealing the potential role of genetic variants of individuals. Few pieces of the literature showed that the population is not exposed to a mixture of metals. Hence, in this study, an attempt has been made to explore whether some other metals play a synergistic role in As-induced toxicity. METHODS: For this, an assessment of the level of heavy metals using ED-XRF in soil, vegetables from As-exposed areas along with quantification of the heavy metal concentration in human blood and hair of the As-exposed population were conducted. RESULTS: Results show the concentration of urinary arsenic is very high signifying the magnitude of the exposure. In addition to this, the levels of iron (Fe), copper (Cu), chromium (Cr) were found to be very high in soil and Fe, manganese (Mn), lead (Pb) in vegetables were exceeding the WHO/FAO recommended permissible limit. However, Fe and zinc (Zn) were predominantly high in whole blood and hair of the arsenic-exposed population when compared with the control population. CONCLUSION: It can be confirmed that the population from Murshidabad is exposed to As and other heavy metals through drinking water as well as food. Particularly for this population, Fe, Zn and rubidium (Rb) may play a synergistic role in arsenic-induced toxicity. However, further studies on the large population-based investigation are required to establish the chemistry of the metal toxicity.


Subject(s)
Arsenic , Drinking Water , Metals, Heavy , Humans , Arsenic/toxicity , India , Metals, Heavy/toxicity
20.
Sci Rep ; 13(1): 4895, 2023 03 25.
Article in English | MEDLINE | ID: mdl-36966257

ABSTRACT

Ectopic fat deposition is more strongly associated with obesity-related health problems including type 2 diabetes mellitus (T2DM), cardiovascular diseases (CVD), hypothyroidism, arthritis, etc. Our study aimed at identifying the cumulative role of several risk factors in developing obesity and the role of ectopic fat (visceral fat) in predicting cardiovascular disease risk in varied age groups among urban adult academic professionals in West Bengal. 650 adults (Male = 456; Female = 194) associated with the academic job (age 20-65 years) in urban West Bengal were randomly selected for anthropometric, blood biochemical, and questionnaire-based analyses. Body Mass Index and Visceral Fat% exhibited comparable association with all the other anthropometric parameters (e.g. Whole body Subcutaneous fat%: male-Linear Regression Comparison: F = 11.68; P < 0.001; female-F = 6.11; P < 0.01). Therefore, VF% acts as a risk factor alongside BMI in instances where BMI fails alone. The presence of T2DM, hypertension, and hypothyroidism in the case groups confirmed their obesity-associated longitudinal pattern of inheritance. Unhealthy diet pattern indicates improper liver function, vitamin D deficiency, and increased erythrocytic inflammation. An overall sedentary lifestyle with parental history of obesity was found to be significant in the longitudinal transmission of the disease.


Subject(s)
Cardiovascular Diseases , Diabetes Mellitus, Type 2 , Humans , Adult , Male , Female , Young Adult , Middle Aged , Aged , Diabetes Mellitus, Type 2/complications , Sedentary Behavior , Obesity/complications , Obesity/epidemiology , Risk Factors , Cardiovascular Diseases/etiology , Epidemiologic Studies , Body Mass Index , India/epidemiology
SELECTION OF CITATIONS
SEARCH DETAIL