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1.
Clin Infect Dis ; 62(1): 75-7, 2016 Jan 01.
Article in English | MEDLINE | ID: mdl-26409062

ABSTRACT

Since the introduction of the varicella vaccine to the routine immunization schedule, we have observed a 70% reduction in the rate of varicella-associated invasive group A streptococcal infections (IGASI). In the mean time, the clinical presentation of IGASI and microbiological characteristics of GAS strains have changed significantly.


Subject(s)
Chickenpox Vaccine , Streptococcal Infections/epidemiology , Streptococcal Infections/microbiology , Streptococcus pyogenes , Child , Child, Preschool , Fasciitis, Necrotizing , Female , Humans , Infant , Male , Retrospective Studies
2.
Clin Infect Dis ; 61(5): 779-86, 2015 Sep 01.
Article in English | MEDLINE | ID: mdl-25944342

ABSTRACT

BACKGROUND: We aimed to describe features of Escherichia coli meningitis in a large population of children and the molecular characteristics of the involved strains to determine factors associated with severe disease or death. METHODS: Between 2001 and 2013, a prospective national survey collected data for 325 children hospitalized with E. coli meningitis. The national reference center genetically characterized 141 isolates. RESULTS: Among the 325 cases, 65.2% were term, 22.4% late preterm, and 12.5% very/extremely preterm infants. Escherichia coli meningitis was 7-fold more frequent in preterm than term infants. Median age at diagnosis was 14 days; 71.1% of infants were neonates, with 2 peaks of infection at age 0-3 days (mostly preterm neonates) and 11-15 days (mostly term neonates); 8.9% were >89 days old. In total, 51.1% patients were considered to have severe disease, and 9.2% died. B2.1 phylogenetic subgroup (56%) and O1 serogroup (27.7%) were the most frequently identified. On multivariate analysis, death was associated with preterm birth (odds ratio [OR], 3.3 [95% confidence interval {CI}, 1.3-8.4], P = .015 for late preterm infants; OR, 7.3 [95% CI, 2.7-20.9], P < .001 for very/extremely preterm infants) and cerebrospinal fluid (CSF) to blood glucose ratio <0.10 (OR, 15.3 [95% CI, 1.8-128.3], P = .012). Death was associated with uncommon O serogroup strains (P = .014) and severe disease with O7 serogroup (P = .034) and PapGII adhesin (OR, 2.3 [95% CI, 1.2-4.5], P = .015). CONCLUSIONS: In this large study of 325 cases of E. coli meningitis, risk factors of severe disease or death were preterm birth, severe hypoglycorrhachia, CSF/blood glucose ratio <0.10, and molecular characteristics of strains, which should help optimize therapeutic management.


Subject(s)
Infant, Newborn, Diseases/epidemiology , Infant, Newborn, Diseases/microbiology , Meningitis, Escherichia coli/epidemiology , Meningitis, Escherichia coli/microbiology , Blood Glucose , Escherichia coli/classification , Escherichia coli/genetics , Female , France/epidemiology , Glucose/cerebrospinal fluid , Humans , Infant , Infant, Newborn , Infant, Newborn, Diseases/mortality , Infant, Newborn, Diseases/physiopathology , Male , Meningitis, Escherichia coli/mortality , Meningitis, Escherichia coli/physiopathology , Prospective Studies , Risk Factors
3.
Acta Paediatr ; 104(10): e460-5, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26099938

ABSTRACT

AIM: Ultrasound and biological tools are used to predict high-grade vesicoureteral reflux, but other markers are needed to better select patients who need voiding cystography. Our aim was to determine whether studying Escherichia coli virulence factors would help to predict vesicoureteral reflux in patients with their first acute pyelonephritis. METHODS: We included children presenting with E. coli-related acute pyelonephritis or cystitis. Vesicoureteral reflux was assessed by voiding cystography. Virulence factors were identified by multiplex polymerase chain reaction. Statistical analysis was performed using logistic regression and the mean c-statistic test. RESULTS: We included 198 patients: 30 with cystitis and 168 with acute pyelonephritis, including 46 with vesicoureteral reflux. High-grade reflux was associated with acute pyelonephritis caused by the E. coli lacking virulence factors papGII (82% versus 47%, p < 0.001) or papC (85% versus 53%, p < 0.001) or belonging to phylogenetic group A or B1. When we added genetic data (lack of papGII, fyuA and phylogenetic groups) to classical predictors of vesicoureteral reflux (ultrasound examination, gender, age), the ability to predict high-grade reflux increased, with the c-statistic rising from 0.88 to 0.93. CONCLUSION: Bacterial virulence factors and clinical factors helped to predict high-grade reflux and may help to avoid unnecessary voiding cystographies.


Subject(s)
Bacteriuria/complications , Escherichia coli/pathogenicity , Vesico-Ureteral Reflux/microbiology , Virulence Factors/genetics , Adhesins, Bacterial/genetics , Bacterial Toxins/genetics , Bacteriuria/microbiology , Escherichia coli/genetics , Female , Humans , Infant , Male , Retrospective Studies
4.
Proc Natl Acad Sci U S A ; 109(8): 3065-70, 2012 Feb 21.
Article in English | MEDLINE | ID: mdl-22315421

ABSTRACT

The degree to which molecular epidemiology reveals information about the sources and transmission patterns of an outbreak depends on the resolution of the technology used and the samples studied. Isolates of Escherichia coli O104:H4 from the outbreak centered in Germany in May-July 2011, and the much smaller outbreak in southwest France in June 2011, were indistinguishable by standard tests. We report a molecular epidemiological analysis using multiplatform whole-genome sequencing and analysis of multiple isolates from the German and French outbreaks. Isolates from the German outbreak showed remarkably little diversity, with only two single nucleotide polymorphisms (SNPs) found in isolates from four individuals. Surprisingly, we found much greater diversity (19 SNPs) in isolates from seven individuals infected in the French outbreak. The German isolates form a clade within the more diverse French outbreak strains. Moreover, five isolates derived from a single infected individual from the French outbreak had extremely limited diversity. The striking difference in diversity between the German and French outbreak samples is consistent with several hypotheses, including a bottleneck that purged diversity in the German isolates, variation in mutation rates in the two E. coli outbreak populations, or uneven distribution of diversity in the seed populations that led to each outbreak.


Subject(s)
Disease Outbreaks/statistics & numerical data , Escherichia coli Infections/epidemiology , Escherichia coli Infections/microbiology , Escherichia coli/genetics , Escherichia coli/isolation & purification , Escherichia coli Infections/genetics , Europe/epidemiology , Humans , Models, Genetic , Phylogeny , Polymorphism, Single Nucleotide/genetics
5.
J Clin Microbiol ; 51(6): 1727-32, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23515552

ABSTRACT

Maternal-fetal Escherichia coli infections, such as neonatal bacteremia and meningitis, are important causes of morbidity and mortality. From 2006 to 2010, we studied newborns and their mothers who were colonized with E. coli in a French hospital in order to document (i) the epidemiology and genetic characteristics of extended-spectrum-beta-lactamase (ESBL)-producing E. coli strains, (ii) the prevalence of associated virulence genes, (iii) the prevalence of clone sequence type 131 (ST131), and (iv) the genetic relationship among ESBL-producing strains. Among the 2,755 E. coli cultures recovered from vaginal or neonatal samples, 68 were ESBL producers (2.46%). We found a wide diversity of ESBL genes, with the majority being bla(CTX-M-14), bla(CTX-M-1), and bla(CTX-M-15), distributed among the 4 main phylogenetic groups. Genes encoding virulence factors were found in 90.7% of the isolates, with ≥ 2 virulence genes present in 76% of cases. The prevalence of ST131 among ESBL-producing E. coli isolates was 9.4% (6/64). Five of these 6 ST131 isolates possessed bla(CTX-M-15) enzymes (and also were resistant to quinolones), and one possessed bla(CTX-M-2) enzymes. Two possessed virulence genes, suggesting the presence of pathogenicity island IIJ96 (PAI IIJ96)-like domains. Pulsed-field gel electrophoresis (PFGE) revealed a high level of genomic diversity overall, except for 3 closely related isolates belonging to clonal group ST131. Repetitive PCR showed that the six ST131 isolates were closely related to ST131 control strains (>95% similarity). This study shows a high prevalence of ESBL-producing E. coli strains and clonal group ST131 in the French maternal-fetal population. These results suggest a widespread distribution of ESBL enzymes in the community and highlight the early transmission between mothers and neonates. These findings are worrisome, especially for this particularly vulnerable population.


Subject(s)
Disease Transmission, Infectious , Escherichia coli Infections/microbiology , Escherichia coli Infections/transmission , Escherichia coli/classification , Escherichia coli/enzymology , beta-Lactamases/metabolism , Adult , Blood/microbiology , Cerebrospinal Fluid/microbiology , Cluster Analysis , Escherichia coli/genetics , Escherichia coli/isolation & purification , Escherichia coli Infections/epidemiology , Female , France , Genetic Variation , Genotype , Humans , Infant, Newborn , Molecular Epidemiology , Molecular Typing , Phylogeny , Prevalence , Vagina/microbiology , Virulence Factors/genetics
6.
J Pediatr ; 162(6): 1282-4, 1284.e1, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23465407

ABSTRACT

We investigated mechanisms of the false-positive test results on rapid-antigen detection test (RADT) for group A Streptococcal (GAS) pharyngitis. Most RADT false-positives (76%) were associated with polymerase chain reaction-positive GAS results, suggesting that RADT specificity could be considered close to 100%. Finding that 61% of GAS culture-negative but RADT-positive cases were positive on both GAS polymerase chain reaction and Staphylococcus aureus testing, we posit bacterial inhibition as causative.


Subject(s)
Antigens, Bacterial/analysis , Pharyngitis/diagnosis , Pharynx/microbiology , Staphylococcus aureus/isolation & purification , Streptococcal Infections/diagnosis , Streptococcus pyogenes/isolation & purification , Adolescent , Antigens, Bacterial/genetics , Case-Control Studies , Child , Child, Preschool , False Positive Reactions , Humans , Pharyngitis/microbiology , Polymerase Chain Reaction/methods , Sensitivity and Specificity , Staphylococcus aureus/immunology , Streptococcus pyogenes/immunology
7.
Clin Infect Dis ; 54(11): 1588-94, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22460976

ABSTRACT

BACKGROUND: On 22 June 2011, 8 patients with hemolytic uremic syndrome (HUS) or bloody diarrhea were reported in France. All 8 were attendees of a community center event on 8 June near Bordeaux. Three Escherichia coli cases were confirmed by isolation of Shiga toxin-producing E. coli O104:H4 stx2 aggR producing a cefotaximase (CTX-M) ß-lactamase (STEC O104:H4); the same rare serotype caused the outbreak in Germany in May-July 2011. An investigation was initiated to describe the outbreak, identify the vehicle for infection, and guide control measures. METHODS: We conducted a retrospective cohort study among all adults attending the event, including food handlers. A standardized questionnaire was administered to participants. A case was an attendee who developed HUS or diarrhea between 8 and 24 June. Cases were confirmed by isolation of STEC O104:H4 or O104 serology. Relative risks (RRs) and 95% confidence intervals (CIs) by exposure were calculated using a Poisson regression model. RESULTS: Twenty-four cases were identified (14% attack rate). Of these, 18 (75%) were women, 22 (92%) were adults, 7 (29%) developed HUS, 5 (21%) developed bloody diarrhea, and 12 (50%) developed diarrhea. Ten (42%) cases were confirmed. Fenugreek was the only sprout type with an independent association to illness (RR, 5.1; 95% CI, 2.3-11.1) in multivariable analysis. CONCLUSIONS: This investigation identified a point-source STEC O104:H4 outbreak associated with consumption of fenugreek sprouts. Comparison of results from French and German STEC O104:H4 outbreak investigations enabled identification of a common food vehicle, fenugreek sprouts, and resulted in implementation of Europe-wide control measures in July 2011.


Subject(s)
Disease Outbreaks , Escherichia coli Infections/epidemiology , Foodborne Diseases/epidemiology , Shiga-Toxigenic Escherichia coli/isolation & purification , Trigonella/microbiology , Adolescent , Adult , Aged , Cohort Studies , Diarrhea/epidemiology , Diarrhea/microbiology , Escherichia coli Infections/microbiology , Female , Foodborne Diseases/microbiology , France/epidemiology , Hemolytic-Uremic Syndrome/epidemiology , Hemolytic-Uremic Syndrome/microbiology , Humans , Male , Middle Aged , Retrospective Studies , Serotyping , Shiga-Toxigenic Escherichia coli/classification , Young Adult
8.
Antimicrob Agents Chemother ; 56(7): 3568-75, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22491690

ABSTRACT

We evaluated phage therapy in experimental infections due to S242, a fatal neonatal meningitis Escherichia coli strain belonging to the worldwide-distributed O25b:H4-ST131 clone that produces extended-spectrum beta-lactamase CTX-M-15. A lytic phage, EC200(PP), active against S242, was isolated from environmental water. After determining in vitro and ex vivo stabilities and pharmacokinetic properties of EC200(PP) in rat pups, we assessed the therapeutic efficacy of a single dose of 10(8) PFU using models of sepsis and meningitis in which fatality was 100%. EC200(PP) was partially neutralized by human serum. In contrast to the high concentration of phage in the spleen and the kidney, low titers in urine and the central nervous system were observed. Nevertheless, in the sepsis model, EC200(PP) administered 7 h or 24 h postinfection resulted in 100% and 50% pup survival, respectively. In the meningitis model, EC200(PP) administered 1 h or 7 h postinfection rescued 100% of the animals. The most delayed treatments were associated with the selection of phage-resistant S242 mutants. However, a representative mutant was highly sensitive to killing serum activity and avirulent in an animal model. EC200(PP) is a potential therapeutic agent for sepsis and meningitis caused by the widespread E. coli O25:H4-ST131 multidrug-resistant clone.


Subject(s)
Bacteriophages/physiology , Escherichia coli Infections/therapy , Escherichia coli/enzymology , Escherichia coli/virology , Meningitis/therapy , Sepsis/therapy , beta-Lactamases/metabolism , Animals , Disease Models, Animal , Escherichia coli/pathogenicity , Female , Humans , Meningitis/microbiology , Rats , Rats, Sprague-Dawley , Sepsis/microbiology
9.
J Clin Microbiol ; 50(4): 1295-302, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22259214

ABSTRACT

Dissemination of carbapenem resistance among Enterobacteriaceae poses a considerable threat to public health. Carbapenemase gene detection by molecular methods is the gold standard but is available in only a few laboratories. The aim of this study was to test phenotypic methods for the detection of metallo-ß-lactamase (MBL)- or Klebsiella pneumoniae carbapenemase (KPC)-producing Enterobacteriaceae and associated mechanisms of ß-lactam resistance against a panel of 30 genotypically characterized carbapenem-resistant Enterobacteriaceae : 9 MBL, 7 KPC, 6 OXA-48, and 8 extended-spectrum ß-lactamase (ESBL) or AmpC ß-lactamases associated with decreased permeability. We used carbapenemase inhibitor-impregnated agar to test for carbapenem-resistant strains. Differences in the inhibition zone sizes of the meropenem, imipenem, ertapenem, and doripenem disks were measured between control and inhibitor (EDTA or phenylboronic acid [PBA] with or without cloxacillin)-impregnated Mueller-Hinton agar with a cutoff of 10 mm. All 9 MBL- and 7 KPC-producing Enterobacteriaceae were identified from the differences in zone size in the presence and absence of specific inhibitors, regardless of the carbapenem MICs and including isolates with low-level resistance to carbapenems. We also detected their associated ß-lactam resistance mechanisms (11 ESBL-type and 5 class A ß-lactamase 2b). No differences in zone size were observed for OXA-48-producing strains or other carbapenem resistance mechanisms such as ESBL and decreased permeability. We propose a new strategy to detect carbapenemases (MBL- and KPC-type) and associated mechanisms of ß-lactam resistance (ESBL or class A ß-lactamase 2b) by the use of inhibitor-impregnated agar. A rapid phenotypic detection of resistance mechanisms is important for epidemiological purposes and for limiting the spread of resistant strains by implementing specific infection control measures.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Carbapenems/pharmacology , Enterobacteriaceae/enzymology , beta-Lactam Resistance/genetics , beta-Lactamases/genetics , Disk Diffusion Antimicrobial Tests , Enterobacteriaceae/drug effects , Enterobacteriaceae/genetics , Phenotype
10.
Int J Med Microbiol ; 302(7-8): 300-3, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23103047

ABSTRACT

We studied the macrolide resistance and serotypes of 585 group A streptococcus (GAS) isolates collected from French children with pharyngitis. Nineteen isolates (3.2%) were erythromycin-resistant and harbored the following resistance genes: 31.6% mef(A), 15.8% erm(A), and 52.6% erm(B). The 19 isolates included 7 different emm types (4, 1, 11, 2, 28, 12, and 77) and 7 corresponding multilocus sequence types. The current fall in macrolide consumption has led to a very low rate of GAS macrolide resistance.


Subject(s)
Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial , Macrolides/pharmacology , Pharyngitis/epidemiology , Streptococcal Infections/epidemiology , Streptococcus pyogenes/drug effects , Adolescent , Child , Child, Preschool , Cluster Analysis , France/epidemiology , Genes, Bacterial , Genotype , Humans , Multilocus Sequence Typing , Pharyngitis/microbiology , Prevalence , Serotyping , Streptococcal Infections/microbiology , Streptococcus pyogenes/classification , Streptococcus pyogenes/isolation & purification , Virulence Factors/genetics
11.
BMC Microbiol ; 12: 115, 2012 Jun 21.
Article in English | MEDLINE | ID: mdl-22720670

ABSTRACT

BACKGROUND: The sequenced O45:K1:H7 Escherichia coli meningitis strain S88 harbors a large virulence plasmid. To identify possible genetic determinants of pS88 virulence, we examined the transcriptomes of 88 plasmidic ORFs corresponding to known and putative virulence genes, and 35 ORFs of unknown function. RESULTS: Quantification of plasmidic transcripts was obtained by quantitative real-time reverse transcription of extracted RNA, normalized on three housekeeping genes. The transcriptome of E. coli strain S88 grown in human serum and urine ex vivo were compared to that obtained during growth in Luria Bertani broth, with and without iron depletion. We also analyzed the transcriptome of a pS88-like plasmid recovered from a neonate with urinary tract infection. The transcriptome obtained after ex vivo growth in serum and urine was very similar to those obtained in iron-depleted LB broth. Genes encoding iron acquisition systems were strongly upregulated. ShiF and ORF 123, two ORFs encoding protein with hypothetical function and physically linked to aerobactin and salmochelin loci, respectively, were also highly expressed in iron-depleted conditions and may correspond to ancillary iron acquisition genes. Four ORFs were induced ex vivo, independently of the iron concentration. Other putative virulence genes such as iss, etsC, ompTp and hlyF were not upregulated in any of the conditions studied. Transcriptome analysis of the pS88-like plasmid recovered in vivo showed a similar pattern of induction but at much higher levels. CONCLUSION: We identify new pS88 genes potentially involved in the growth of E. coli meningitis strain S88 in human serum and urine.


Subject(s)
Bacteriocin Plasmids , Escherichia coli/growth & development , Escherichia coli/genetics , Gene Expression Regulation, Bacterial , Serum/microbiology , Transcriptome , Urine/microbiology , Child, Preschool , Escherichia coli Proteins/biosynthesis , Gene Expression Profiling , Humans , Infant , Transcription, Genetic , Virulence Factors/biosynthesis
12.
Ann Neurol ; 69(2): 341-51, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21387379

ABSTRACT

OBJECTIVE: Perinatal infections and the systemic inflammatory response to them are critical contributors to white matter disease (WMD) in the developing brain despite the use of highly active antibiotics. Fluoroquinolones including ciprofloxacin (CIP) have intrinsic anti-inflammatory effects. We hypothesized that CIP, in addition to its antibacterial activity, could exert a neuroprotective effect by modulating white matter inflammation in response to sepsis. METHODS: We adapted an Escherichia coli sepsis model to 5-day-old rat pups (P5), to induce white matter inflammation without bacterial meningitis. We then compared the ability of CIP to modulate inflammatory-induced brain damage compared with cefotaxime (CTX) (treatment of reference). RESULTS: Compared with CTX, CIP was associated with reduced microglial activation and inducible nitric oxide synthase (iNOS) expression in the developing white matter in rat pups subjected to E. coli sepsis. In addition to reducing microglial activation, CIP was able to prevent myelination delay induced by E. coli sepsis and to promote oligodendroglial survival and maturation. We found that E. coli sepsis altered the transcription of the guidance molecules semaphorin 3A and 3F; CIP treatment was capable of reducing semaphorin 3A and 3F transcription levels to those seen in uninfected controls. Finally, in a noninfectious white matter inflammation model, CIP was associated with significantly reduced microglial activation and prevented WMD when compared to CTX. INTERPRETATION: These data strongly suggest that CIP exerts a beneficial effect in a model of E. coli sepsis-induced WMD in rat pups that is independent of its antibacterial activity but likely related to iNOS expression modulation.


Subject(s)
Anti-Infective Agents/therapeutic use , Ciprofloxacin/therapeutic use , Demyelinating Diseases/prevention & control , Escherichia coli Infections/complications , Nerve Fibers, Myelinated/drug effects , Sepsis/complications , Animals , Animals, Newborn , Demyelinating Diseases/etiology , Demyelinating Diseases/metabolism , Demyelinating Diseases/pathology , Escherichia coli Infections/metabolism , Immunohistochemistry , Intracellular Signaling Peptides and Proteins/metabolism , Nerve Fibers, Myelinated/metabolism , Nerve Fibers, Myelinated/pathology , Nerve Tissue Proteins/metabolism , Nitric Oxide Synthase Type II/metabolism , Rats , Rats, Sprague-Dawley , Reverse Transcriptase Polymerase Chain Reaction , Semaphorin-3A/metabolism , Sepsis/metabolism , Statistics, Nonparametric
13.
BMC Infect Dis ; 12: 52, 2012 Mar 07.
Article in English | MEDLINE | ID: mdl-22397629

ABSTRACT

BACKGROUND: Several studies have investigated the impact of 7-valent pneumococcal conjugate vaccine (PCV7) on pneumococcal (Sp) and staphylococcal (Sa) nasopharyngeal (NP) carriage. Few have investigated the impact on Haemophilus influenzae (Hi) and Moraxella catarrhalis (Mc) carriage. We aimed to compare the NP carriage rates in young children with acute otitis media (AOM) before and after PCV7 implementation in France. METHODS: Prior to PCV7 implementation, we performed 4 successive randomized trials with NP samples. These studies compared several antibiotic regimens for treating AOM in young children (6 to 30 months). After PCV7 implementation, to assess the impact of the vaccination program on NP flora, young children with AOM were enrolled in a prospective surveillance study. In each study, we obtained an NP sample to analyze the carriage rates of Sp, Hi, Mc and Sa and the factors influencing the carriage. Standardized history and physical examination findings were recorded; the methods used for NP swabs (sampling and cultures) were the same in all studies. RESULTS: We enrolled 4,405 children (mean age 13.9 months, median 12.8). Among the 2,598 children enrolled after PCV7 implementation, 98.3% were vaccinated with PCV7. In comparing the pre- and post-PCV7 periods, we found a slight but non-significant decrease in carriage rates of pneumococcus (AOR = 0.85 [0.69;1.05]), H. influenzae (AOR = 0.89 [0.73;1.09]) and S. aureus (AOR = 0.92 [0.70;1.19]). By contrast, the carriage rate of M. catarrhalis increased slightly but not significantly between the 2 periods (AOR = 1.08 [0.95;1.2]). Among Sp carriers, the proportion of PCV7 vaccine types decreased from 66.6% to 10.7% (P < 0.001), penicillin intermediate-resistant strains increased from 30.3% to 43.4% (P < 0.001), and penicillin-resistant strains decreased greatly from 22.8% to 3.8% (P < 0.001). The proportion of Hi ß-lactamase-producing strains decreased from 38.6% to 17.1% (P < 0.001). CONCLUSION: The carriage rates of otopathogen species (Sp, Hi, Mc) and Sa did not significantly change in children with AOM after PCV7 implementation in France. However, we observed significant changes in carriage rates of PCV7 vaccine serotypes and penicillin non-susceptible Sp.


Subject(s)
Biota , Carrier State/epidemiology , Carrier State/microbiology , Nasopharynx/microbiology , Otitis Media/microbiology , Pneumococcal Vaccines/immunology , Child, Preschool , Female , France , Haemophilus influenzae/isolation & purification , Heptavalent Pneumococcal Conjugate Vaccine , Humans , Infant , Male , Moraxella catarrhalis/isolation & purification , Pneumococcal Vaccines/administration & dosage , Prevalence , Prospective Studies , Randomized Controlled Trials as Topic , Staphylococcus aureus/isolation & purification , Streptococcus pneumoniae/isolation & purification
14.
BMC Infect Dis ; 12: 315, 2012 Nov 21.
Article in English | MEDLINE | ID: mdl-23171127

ABSTRACT

BACKGROUND: The increasing incidence of community acquired infection due to Extended-Spectrum Beta-Lactamase (ESBL) -Producing Enterobacteriaceae represent a great concern because there are few therapeutic alternatives. The fecal flora of children in the community can represent a reservoir for ESBLs genes which are located on highly transmissible plasmids and the spread of these genes among bacterial pathogens is concerning. Because intestinal carriage is a key factor in the epidemiology of ESBL-producing Enterobacteriaceae, the study of the prevalence of these resistant bacteria and risk factors in young children is of particular interest. METHODS: We assessed the prevalence and risk factors of community-acquired faecal carriage of extended-spectrum-ß-lactamase (ESBL)-producing Enterobacteriaceae in children aged from 6 to 24 months, by means of rectal swabbing in community pediatric practices. Child's lifestyle and risk factors for carriage of resistant bacteria were noted. RESULTS: Among the 411 children enrolled, 4.6% carried ESBL-producing Enterobacteriaceae. CTX-M-1, CTX-M-15 and CTX-M-14 were the predominant ESBLs. The 18 E. coli isolates were genetically heterogeneous. Recent third-generation oral-cephalosporin exposure was associated with a higher risk of ESBL carriage (AOR=3.52, 95% CI[1.06-11.66], p=0.04). CONCLUSIONS: The carriage rate of ESBL-producing Enterobacteriacae in young children in the French community setting is noteworthy, underlining the importance of this population as a reservoir. Exposure to third-generation oral cephalosporins was associated with a significant risk of ESBL carriage in our study. Because of the significant public health implications including the treatment of community-acquired urinary tract infections, the spread of organisms producing ESBLs in the community merits close monitoring with enhanced efforts for surveillance.


Subject(s)
Enterobacteriaceae/enzymology , Feces/microbiology , beta-Lactamases/metabolism , Enterobacteriaceae/isolation & purification , Female , Genetic Variation , Humans , Infant , Male , Prevalence , Risk Factors
15.
Eur J Pediatr ; 171(9): 1365-71, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22527566

ABSTRACT

We performed a cohort study of children who survived bacterial meningitis after the neonatal period at a single pediatric center in France over a 10-year period (1995-2004) to identify predictors of death and long-term neurological deficits in children with bacterial meningitis. We performed multivariate regression to determine independent predictors of death and neurologic deficits. We identified 101 children with bacterial meningitis of which 19 died during initial hospitalization. Need for mechanical ventilation [hazard ratio (HR) 11.5, 95 % confidence interval (CI) 2.4-55.5)] and thrombocytopenia defined as a platelet count <150 × 10(9) per liter (HR 0.6, 95 % CI 0.4-0.9) at presentation were associated with death during initial hospitalization. At final assessment, 42 of the 70 survivors had no neurologic deficits identified; 20 had a single deficit, and eight had multiple deficits. A delay in initiation of antibiotics (HR 1.3, 95 % CI 1.1-1.7) and hydrocephalus on computed tomographic scan (HR 2.6, 95 % CI 1.1-6.0) were associated with having one or more long-term neurologic deficits. Identification of children at risk of death or long-term neurologic sequelae may allow therapeutic interventions to be directed to children at the highest risk.


Subject(s)
Meningitis, Bacterial/complications , Mental Disorders/etiology , Nervous System Diseases/etiology , Cohort Studies , Epilepsy/etiology , Female , Follow-Up Studies , Hearing Loss, Sensorineural/etiology , Hospital Mortality , Hospitalization , Humans , Infant , Intellectual Disability/etiology , Male , Meningitis, Bacterial/diagnosis , Meningitis, Bacterial/mortality , Meningitis, Bacterial/therapy , Migraine Disorders/etiology , Movement Disorders/etiology , Multivariate Analysis , Prognosis , Proportional Hazards Models , Retrospective Studies , Risk Factors , Sleep Wake Disorders/etiology , Treatment Outcome
16.
Clin Lab ; 58(3-4): 343-6, 2012.
Article in English | MEDLINE | ID: mdl-22582511

ABSTRACT

BACKGROUND: Meningococcal meningitis requires rapid diagnosis and immediate management which is enhanced by the use of PCR for the ascertainment of these infections. However, its use is still restricted to reference laboratories. METHODS: We conducted an inter-laboratory study to assess the implementation and the performance of PCR in ten French hospital settings in 2010. RESULTS: Our data are in favour of this implementation. Although good performance was obtained in identifying Neisseria meningitidis positive samples, the main issue was reported in identifying other species (Streptococcus pneumoniae and Haemophilus influenzae) which are also involved in bacterial meningitis cases. CONCLUSIONS: Several recommendations are required and, mainly, PCR should target the major etiological agents (N. meningitidis, S. pneumonia, and H. influenzae) of acute bacterial meningitis. Moreover, PCR should predict the most frequent serogroups of Neisseria meningitidis according to local epidemiology.


Subject(s)
Meningitis, Meningococcal/diagnosis , Neisseria meningitidis/isolation & purification , Polymerase Chain Reaction/methods , France , Haemophilus influenzae/genetics , Haemophilus influenzae/isolation & purification , Humans , Neisseria meningitidis/genetics , Sensitivity and Specificity , Streptococcus pneumoniae/genetics , Streptococcus pneumoniae/isolation & purification
17.
PLoS Genet ; 5(1): e1000344, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19165319

ABSTRACT

The Escherichia coli species represents one of the best-studied model organisms, but also encompasses a variety of commensal and pathogenic strains that diversify by high rates of genetic change. We uniformly (re-) annotated the genomes of 20 commensal and pathogenic E. coli strains and one strain of E. fergusonii (the closest E. coli related species), including seven that we sequenced to completion. Within the approximately 18,000 families of orthologous genes, we found approximately 2,000 common to all strains. Although recombination rates are much higher than mutation rates, we show, both theoretically and using phylogenetic inference, that this does not obscure the phylogenetic signal, which places the B2 phylogenetic group and one group D strain at the basal position. Based on this phylogeny, we inferred past evolutionary events of gain and loss of genes, identifying functional classes under opposite selection pressures. We found an important adaptive role for metabolism diversification within group B2 and Shigella strains, but identified few or no extraintestinal virulence-specific genes, which could render difficult the development of a vaccine against extraintestinal infections. Genome flux in E. coli is confined to a small number of conserved positions in the chromosome, which most often are not associated with integrases or tRNA genes. Core genes flanking some of these regions show higher rates of recombination, suggesting that a gene, once acquired by a strain, spreads within the species by homologous recombination at the flanking genes. Finally, the genome's long-scale structure of recombination indicates lower recombination rates, but not higher mutation rates, at the terminus of replication. The ensuing effect of background selection and biased gene conversion may thus explain why this region is A+T-rich and shows high sequence divergence but low sequence polymorphism. Overall, despite a very high gene flow, genes co-exist in an organised genome.


Subject(s)
Escherichia coli/genetics , Genome, Bacterial , DNA Transposable Elements , Evolution, Molecular , Genetics , Genome , Genomics , Likelihood Functions , Models, Biological , Models, Genetic , Phylogeny , Polymorphism, Genetic , Recombination, Genetic
18.
J Infect Dis ; 203(12): 1844-9, 2011 Jun 15.
Article in English | MEDLINE | ID: mdl-21550999

ABSTRACT

Escherichia coli bacteremia in young infants may arise via either urinary tract infection or gut translocation (GT). E. coli GT isolates have rarely been investigated. Molecular analysis of 100 E. coli isolates recovered from bacteremic infants revealed that GT isolates had multilocus sequence types similar to those of urosepsis isolates but different prevalences of PapGII adhesin, TcpC protectin, and ibeA invasin. Compared with late-onset GT isolates, early-onset isolates were associated with significantly different rates of the conserved virulence plasmidic region common to human and avian pathogenic strains and α-hemolysin. We identified genetic determinants potentially involved in specific pathophysiological steps preceding E. coli bloodstream invasion.


Subject(s)
Bacteremia/microbiology , Escherichia coli Infections/microbiology , Escherichia coli/genetics , Gastrointestinal Tract/microbiology , Urinary Tract Infections/microbiology , Virulence Factors/genetics , Adhesins, Escherichia coli/genetics , Bacteremia/diagnosis , Bacteremia/epidemiology , Escherichia coli/classification , Escherichia coli/pathogenicity , Escherichia coli Infections/diagnosis , Escherichia coli Proteins/genetics , Feces/microbiology , Female , Genotype , Humans , Infant , Infant, Newborn , Male , Membrane Proteins/genetics , Multilocus Sequence Typing , Phylogeny , Polymerase Chain Reaction , Urinary Tract Infections/complications , Virulence/genetics
19.
Antimicrob Agents Chemother ; 55(7): 3567-9, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21502635

ABSTRACT

Relative to the cefotaxime-gentamicin combination, the moxifloxacin-cefotaxime combination significantly reduced microglial activation and immature oligodendrocyte cell death and delayed myelination in the developing white matter of neonatal rats with experimental Escherichia coli sepsis. These neuroprotective effects were not due to differences in in vivo bactericidal activities or in the systemic inflammatory responses and could be related to the intrinsic immunomodulatory properties of moxifloxacin. Molecular mechanisms underlying the neuroprotective effect of moxifloxacin remain to be elucidated.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Aza Compounds/therapeutic use , Cefotaxime/therapeutic use , Escherichia coli Infections/drug therapy , Gentamicins/therapeutic use , Leukoencephalopathies/microbiology , Leukoencephalopathies/prevention & control , Quinolines/therapeutic use , Sepsis/drug therapy , Animals , Animals, Newborn , Fluoroquinolones , Moxifloxacin , Rats , Rats, Sprague-Dawley
20.
J Clin Microbiol ; 49(7): 2667-70, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21543570

ABSTRACT

Moxalactam is highly hydrolyzed by plasmid-mediated metallo-ß-lactamases (MBLs), whereas it is poorly inactivated by serine-active carbapenemases. This study demonstrated that moxalactam resistance constituted an effective screen for MBL expression in enterobacteria, which could be confirmed, even in low-MBL-producing isolates, by a disk potentiation test using moxalactam and EDTA.


Subject(s)
Culture Media/chemistry , Enterobacteriaceae/enzymology , Moxalactam/pharmacology , beta-Lactam Resistance , beta-Lactamases/biosynthesis , beta-Lactams/pharmacology , Edetic Acid/metabolism , Microbial Sensitivity Tests/methods
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