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1.
SCOPe: improvements to the structural classification of proteins - extended database to facilitate variant interpretation and machine learning.
Nucleic Acids Res
; 50(D1): D553-D559, 2022 01 07.
Article
in English
| MEDLINE | ID: mdl-34850923
2.
Ecophysiological and genomic analyses of a representative isolate of highly abundant Bacillus cereus strains in contaminated subsurface sediments.
Environ Microbiol
; 24(11): 5546-5560, 2022 11.
Article
in English
| MEDLINE | ID: mdl-36053980
3.
SCOPe: classification of large macromolecular structures in the structural classification of proteins-extended database.
Nucleic Acids Res
; 47(D1): D475-D481, 2019 01 08.
Article
in English
| MEDLINE | ID: mdl-30500919
4.
Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions.
Mol Cell Proteomics
; 15(6): 2186-202, 2016 06.
Article
in English
| MEDLINE | ID: mdl-27099342
5.
Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported.
Mol Cell Proteomics
; 15(5): 1539-55, 2016 05.
Article
in English
| MEDLINE | ID: mdl-26873250
6.
Lessons from the CAGI-4 Hopkins clinical panel challenge.
Hum Mutat
; 38(9): 1155-1168, 2017 09.
Article
in English
| MEDLINE | ID: mdl-28397312
7.
Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.
Environ Sci Technol
; 51(5): 2879-2889, 2017 03 07.
Article
in English
| MEDLINE | ID: mdl-28112946
8.
SCOPe: Structural Classification of Proteins--extended, integrating SCOP and ASTRAL data and classification of new structures.
Nucleic Acids Res
; 42(Database issue): D304-9, 2014 Jan.
Article
in English
| MEDLINE | ID: mdl-24304899
9.
The value of protein structure classification information-Surveying the scientific literature.
Proteins
; 83(11): 2025-38, 2015 Nov.
Article
in English
| MEDLINE | ID: mdl-26313554
10.
Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface.
Environ Microbiome
; 19(1): 26, 2024 Apr 26.
Article
in English
| MEDLINE | ID: mdl-38671539
11.
Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough.
Front Microbiol
; 14: 1095191, 2023.
Article
in English
| MEDLINE | ID: mdl-37065130
12.
High-throughput isolation and characterization of untagged membrane protein complexes: outer membrane complexes of Desulfovibrio vulgaris.
J Proteome Res
; 11(12): 5720-35, 2012 Dec 07.
Article
in English
| MEDLINE | ID: mdl-23098413
13.
WIST: toolkit for rapid, customized LIMS development.
Bioinformatics
; 27(3): 437-8, 2011 Feb 01.
Article
in English
| MEDLINE | ID: mdl-21258060
14.
Survey of large protein complexes in D. vulgaris reveals great structural diversity.
Proc Natl Acad Sci U S A
; 106(39): 16580-5, 2009 Sep 29.
Article
in English
| MEDLINE | ID: mdl-19805340
15.
CORAL: A framework for rigorous self-validated data modeling and integrative, reproducible data analysis.
Gigascience
; 112022 10 17.
Article
in English
| MEDLINE | ID: mdl-36251274
16.
Complete Genome Sequence of Bacillus cereus Strain CPT56D-587-MTF, Isolated from a Nitrate- and Metal-Contaminated Subsurface Environment.
Microbiol Resour Announc
; 11(5): e0014522, 2022 May 19.
Article
in English
| MEDLINE | ID: mdl-35475637
17.
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance.
mSystems
; : e0053721, 2021 Jun 29.
Article
in English
| MEDLINE | ID: mdl-34184913
18.
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.
mSystems
; 6(1)2021 02 23.
Article
in English
| MEDLINE | ID: mdl-33622857
19.
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.
PLoS Biol
; 5(3): e16, 2007 Mar.
Article
in English
| MEDLINE | ID: mdl-17355171
20.
Data growth and its impact on the SCOP database: new developments.
Nucleic Acids Res
; 36(Database issue): D419-25, 2008 Jan.
Article
in English
| MEDLINE | ID: mdl-18000004