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1.

The Relationship Between the Human Genome and Microbiome Comes into View.

Goodrich, Julia K; Davenport, Emily R; Clark, Andrew G; Ley, Ruth E.

Annu Rev Genet ; 51: 413-433, 2017 11 27.

Article in English | MEDLINE | ID: mdl-28934590

2.

Leveraging phenotypic variability to identify genetic interactions in human phenotypes.

Marderstein, Andrew R; Davenport, Emily R; Kulm, Scott; Van Hout, Cristopher V; Elemento, Olivier; Clark, Andrew G.

Am J Hum Genet ; 108(1): 49-67, 2021 01 07.

Article in English | MEDLINE | ID: mdl-33326753

3.

The human gut microbiome and health inequities.

Amato, Katherine R; Arrieta, Marie-Claire; Azad, Meghan B; Bailey, Michael T; Broussard, Josiane L; Bruggeling, Carlijn E; Claud, Erika C; Costello, Elizabeth K; Davenport, Emily R; Dutilh, Bas E; Swain Ewald, Holly A; Ewald, Paul; Hanlon, Erin C; Julion, Wrenetha; Keshavarzian, Ali; Maurice, Corinne F; Miller, Gregory E; Preidis, Geoffrey A; Segurel, Laure; Singer, Burton; Subramanian, Sathish; Zhao, Liping; Kuzawa, Christopher W.

Proc Natl Acad Sci U S A ; 118(25)2021 06 22.

Article in English | MEDLINE | ID: mdl-34161260

4.

Genetic Variation Shapes Murine Gut Microbiota via Immunity.

Davenport, Emily R.

Trends Immunol ; 41(1): 1-3, 2020 01.

Article in English | MEDLINE | ID: mdl-31806285

5.

The relationship between the gut microbiome and host gene expression: a review.

Nichols, Robert G; Davenport, Emily R.

Hum Genet ; 140(5): 747-760, 2021 May.

Article in English | MEDLINE | ID: mdl-33221945

6.

Gut microbiome transition across a lifestyle gradient in Himalaya.

Jha, Aashish R; Davenport, Emily R; Gautam, Yoshina; Bhandari, Dinesh; Tandukar, Sarmila; Ng, Katharine M; Fragiadakis, Gabriela K; Holmes, Susan; Gautam, Guru Prasad; Leach, Jeff; Sherchand, Jeevan Bahadur; Bustamante, Carlos D; Sonnenburg, Justin L.

PLoS Biol ; 16(11): e2005396, 2018 11.

Article in English | MEDLINE | ID: mdl-30439937

7.

The human microbiome in evolution.

Davenport, Emily R; Sanders, Jon G; Song, Se Jin; Amato, Katherine R; Clark, Andrew G; Knight, Rob.

BMC Biol ; 15(1): 127, 2017 12 27.

Article in English | MEDLINE | ID: mdl-29282061

8.

ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins.

Davenport, Emily R; Goodrich, Julia K; Bell, Jordana T; Spector, Tim D; Ley, Ruth E; Clark, Andrew G.

BMC Genomics ; 17(1): 941, 2016 11 21.

Article in English | MEDLINE | ID: mdl-27871240

9.

Ancient dental calculus reveals oral microbiome shifts associated with lifestyle and disease in Great Britain.

Gancz, Abigail S; Farrer, Andrew G; Nixon, Michelle P; Wright, Sterling; Arriola, Luis; Adler, Christina; Davenport, Emily R; Gully, Neville; Cooper, Alan; Britton, Kate; Dobney, Keith; Silverman, Justin D; Weyrich, Laura S.

Nat Microbiol ; 8(12): 2315-2325, 2023 Dec.

Article in English | MEDLINE | ID: mdl-38030898

10.

A Quick Introduction to Version Control with Git and GitHub.

Blischak, John D; Davenport, Emily R; Wilson, Greg.

PLoS Comput Biol ; 12(1): e1004668, 2016 Jan.

Article in English | MEDLINE | ID: mdl-26785377

11.

Host Genetic Determinants of the Microbiome Across Animals: From Caenorhabditis elegans to Cattle.

Ryu, Erica P; Davenport, Emily R.

Annu Rev Anim Biosci ; 10: 203-226, 2022 02 15.

Article in English | MEDLINE | ID: mdl-35167316

12.

Taming the beasts inside.

Ryu, Erica P; Davenport, Emily R.

Elife ; 102021 03 23.

Article in English | MEDLINE | ID: mdl-33755018

13.

Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis.

Kachroo, Priyanka; Eraso, Jesus M; Beres, Stephen B; Olsen, Randall J; Zhu, Luchang; Nasser, Waleed; Bernard, Paul E; Cantu, Concepcion C; Saavedra, Matthew Ojeda; Arredondo, María José; Strope, Benjamin; Do, Hackwon; Kumaraswami, Muthiah; Vuopio, Jaana; Gröndahl-Yli-Hannuksela, Kirsi; Kristinsson, Karl G; Gottfredsson, Magnus; Pesonen, Maiju; Pensar, Johan; Davenport, Emily R; Clark, Andrew G; Corander, Jukka; Caugant, Dominique A; Gaini, Shahin; Magnussen, Marita Debess; Kubiak, Samantha L; Nguyen, Hoang A T; Long, S Wesley; Porter, Adeline R; DeLeo, Frank R; Musser, James M.

Nat Genet ; 51(3): 548-559, 2019 03.

Article in English | MEDLINE | ID: mdl-30778225

14.

Cohort-based learning for microbiome research community standards.

Kelliher, Julia M; Rudolph, Marisa; Vangay, Pajau; Abbas, Arwa; Borton, Mikayla A; Davenport, Emily R; Davenport, Karen W; Erazo, Natalia G; Herman, Chloe; Karstens, Lisa; Kocurek, Brandon; Lutz, Holly L; Myers, Kevin S; Ockert, Ingrid; Rodriguez, Francisca E; Santistevan, Camille; Saunders, Jaclyn K; Smith, Montana L; Vogtmann, Emily; Windsor, Amanda; Wood-Charlson, Elisha M; Woodley, Lou; Eloe-Fadrosh, Emiley A.

Nat Microbiol ; 8(5): 751-753, 2023 05.

Article in English | MEDLINE | ID: mdl-37069400

15.

Tooth Be Told, Genetics Influences Oral Microbiome.

Davenport, Emily R.

Cell Host Microbe ; 22(3): 251-253, 2017 09 13.

Article in English | MEDLINE | ID: mdl-28910628

16.

Host genetic variation in mucosal immunity pathways influences the upper airway microbiome.

Igartua, Catherine; Davenport, Emily R; Gilad, Yoav; Nicolae, Dan L; Pinto, Jayant; Ober, Carole.

Microbiome ; 5(1): 16, 2017 02 01.

Article in English | MEDLINE | ID: mdl-28143570

17.

Elucidating the role of the host genome in shaping microbiome composition.

Davenport, Emily R.

Gut Microbes ; 7(2): 178-84, 2016.

Article in English | MEDLINE | ID: mdl-26939746

18.

Cross-species comparisons of host genetic associations with the microbiome.

Goodrich, Julia K; Davenport, Emily R; Waters, Jillian L; Clark, Andrew G; Ley, Ruth E.

Science ; 352(6285): 532-5, 2016 Apr 29.

Article in English | MEDLINE | ID: mdl-27126034

19.

Genetic Determinants of the Gut Microbiome in UK Twins.

Goodrich, Julia K; Davenport, Emily R; Beaumont, Michelle; Jackson, Matthew A; Knight, Rob; Ober, Carole; Spector, Tim D; Bell, Jordana T; Clark, Andrew G; Ley, Ruth E.

Cell Host Microbe ; 19(5): 731-43, 2016 May 11.

Article in English | MEDLINE | ID: mdl-27173935

20.

Heritable components of the human fecal microbiome are associated with visceral fat.

Beaumont, Michelle; Goodrich, Julia K; Jackson, Matthew A; Yet, Idil; Davenport, Emily R; Vieira-Silva, Sara; Debelius, Justine; Pallister, Tess; Mangino, Massimo; Raes, Jeroen; Knight, Rob; Clark, Andrew G; Ley, Ruth E; Spector, Tim D; Bell, Jordana T.

Genome Biol ; 17(1): 189, 2016 Sep 26.

Article in English | MEDLINE | ID: mdl-27666579

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The Relationship Between the Human Genome and Microbiome Comes into View.

Leveraging phenotypic variability to identify genetic interactions in human phenotypes.

The human gut microbiome and health inequities.

Genetic Variation Shapes Murine Gut Microbiota via Immunity.

The relationship between the gut microbiome and host gene expression: a review.

Gut microbiome transition across a lifestyle gradient in Himalaya.

The human microbiome in evolution.

ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins.

Ancient dental calculus reveals oral microbiome shifts associated with lifestyle and disease in Great Britain.

A Quick Introduction to Version Control with Git and GitHub.

Host Genetic Determinants of the Microbiome Across Animals: From Caenorhabditis elegans to Cattle.

Taming the beasts inside.

Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis.

Cohort-based learning for microbiome research community standards.

Tooth Be Told, Genetics Influences Oral Microbiome.

Host genetic variation in mucosal immunity pathways influences the upper airway microbiome.

Elucidating the role of the host genome in shaping microbiome composition.

Cross-species comparisons of host genetic associations with the microbiome.

Genetic Determinants of the Gut Microbiome in UK Twins.

Heritable components of the human fecal microbiome are associated with visceral fat.