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1.
Cell ; 161(4): 879-892, 2015 May 07.
Article in English | MEDLINE | ID: mdl-25936837

ABSTRACT

N(6)-methyldeoxyadenosine (6mA or m(6)A) is a DNA modification preserved in prokaryotes to eukaryotes. It is widespread in bacteria and functions in DNA mismatch repair, chromosome segregation, and virulence regulation. In contrast, the distribution and function of 6mA in eukaryotes have been unclear. Here, we present a comprehensive analysis of the 6mA landscape in the genome of Chlamydomonas using new sequencing approaches. We identified the 6mA modification in 84% of genes in Chlamydomonas. We found that 6mA mainly locates at ApT dinucleotides around transcription start sites (TSS) with a bimodal distribution and appears to mark active genes. A periodic pattern of 6mA deposition was also observed at base resolution, which is associated with nucleosome distribution near the TSS, suggesting a possible role in nucleosome positioning. The new genome-wide mapping of 6mA and its unique distribution in the Chlamydomonas genome suggest potential regulatory roles of 6mA in gene expression in eukaryotic organisms.


Subject(s)
Adenine/analogs & derivatives , Chlamydomonas reinhardtii/genetics , Transcription Initiation Site , 5-Methylcytosine/metabolism , Adenine/metabolism , Chlamydomonas reinhardtii/metabolism , DNA, Algal/metabolism , Gene Expression Regulation , Genome-Wide Association Study , Nucleosomes/metabolism , Transcription, Genetic
2.
EMBO J ; 2024 Sep 19.
Article in English | MEDLINE | ID: mdl-39300210

ABSTRACT

Astrocytes in the brain exhibit regional heterogeneity contributing to regional circuits involved in higher-order brain functions, yet the mechanisms controlling their distribution remain unclear. Here, we show that the precise allocation of astrocytes to specific brain regions during development is achieved through transcription factor 4 (Tcf4)-mediated fate restriction based on their embryonic origin. Loss of Tcf4 in ventral telencephalic neural progenitor cells alters the fate of oligodendrocyte precursor cells to transient intermediate astrocyte precursor cells, resulting in mislocalized astrocytes in the dorsal neocortex. These ectopic astrocytes engage with neocortical neurons and acquire features reminiscent of dorsal neocortical astrocytes. Furthermore, Tcf4 functions as a suppressor of astrocyte fate during the differentiation of oligodendrocyte precursor cells derived from the ventral telencephalon, thereby restricting the fate to the oligodendrocyte lineage in the dorsal neocortex. Together, our findings highlight a previously unappreciated role for Tcf4 in regulating astrocyte allocation, offering additional insights into the mechanisms underlying neurodevelopmental disorders linked to Tcf4 mutations.

3.
Nucleic Acids Res ; 52(15): 8746-8762, 2024 Aug 27.
Article in English | MEDLINE | ID: mdl-39011882

ABSTRACT

Bacterial gene expression is a complex process involving extensive regulatory mechanisms. Along with growing interests in this field, Nanopore Direct RNA Sequencing (DRS) provides a promising platform for rapid and comprehensive characterization of bacterial RNA biology. However, the DRS of bacterial RNA is currently deficient in the yield of mRNA-mapping reads and has yet to be exploited for transcriptome-wide RNA modification mapping. Here, we showed that pre-processing of bacterial total RNA (size selection followed by ribosomal RNA depletion and polyadenylation) guaranteed high throughputs of sequencing data and considerably increased the amount of mRNA reads. This way, complex transcriptome architectures were reconstructed for Escherichia coli and Staphylococcus aureus and extended the boundaries of 225 known E. coli operons and 89 defined S. aureus operons. Utilizing unmodified in vitro-transcribed (IVT) RNA libraries as a negative control, several Nanopore-based computational tools globally detected putative modification sites in the E. coli and S. aureus transcriptomes. Combined with Next-Generation Sequencing-based N6-methyladenosine (m6A) detection methods, 75 high-confidence m6A candidates were identified in the E. coli protein-coding transcripts, while none were detected in S. aureus. Altogether, we demonstrated the potential of Nanopore DRS in systematic and convenient transcriptome and epitranscriptome analysis.


Subject(s)
Escherichia coli , Nanopore Sequencing , RNA, Bacterial , Sequence Analysis, RNA , Staphylococcus aureus , Transcriptome , Escherichia coli/genetics , Escherichia coli/metabolism , Staphylococcus aureus/genetics , Staphylococcus aureus/metabolism , Transcriptome/genetics , RNA, Bacterial/genetics , RNA, Bacterial/metabolism , Sequence Analysis, RNA/methods , Nanopore Sequencing/methods , High-Throughput Nucleotide Sequencing/methods , Operon/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Adenosine/analogs & derivatives , Adenosine/metabolism , Adenosine/genetics , Nanopores , Gene Expression Regulation, Bacterial , Gene Expression Profiling/methods
4.
Nucleic Acids Res ; 52(D1): D72-D80, 2024 Jan 05.
Article in English | MEDLINE | ID: mdl-37904589

ABSTRACT

G-quadruplexes (G4s) are non-canonical four-stranded structures and are emerging as novel genetic regulatory elements. However, a comprehensive genomic annotation of endogenous G4s (eG4s) and systematic characterization of their regulatory network are still lacking, posing major challenges for eG4 research. Here, we present EndoQuad (https://EndoQuad.chenzxlab.cn/) to address these pressing issues by integrating high-throughput experimental data. First, based on high-quality genome-wide eG4s mapping datasets (human: 1181; mouse: 24; chicken: 2) generated by G4 ChIP-seq/CUT&Tag, we generate a reference set of genome-wide eG4s. Our multi-omics analyses show that most eG4s are identified in one or a few cell types. The eG4s with higher occurrences across samples are more structurally stable, evolutionarily conserved, enriched in promoter regions, mark highly expressed genes and associate with complex regulatory programs, demonstrating higher confidence level for further experiments. Finally, we integrate millions of functional genomic variants and prioritize eG4s with regulatory functions in disease and cancer contexts. These efforts have culminated in the comprehensive and interactive database of experimentally validated DNA eG4s. As such, EndoQuad enables users to easily access, download and repurpose these data for their own research. EndoQuad will become a one-stop resource for eG4 research and lay the foundation for future functional studies.


Subject(s)
Databases, Genetic , G-Quadruplexes , Regulatory Sequences, Nucleic Acid , Animals , Humans , Mice , Genome , Genomics
5.
Proc Natl Acad Sci U S A ; 120(26): e2220178120, 2023 Jun 27.
Article in English | MEDLINE | ID: mdl-37339202

ABSTRACT

The compositional and thermal state of Earth's mantle provides critical constraints on the origin, evolution, and dynamics of Earth. However, the chemical composition and thermal structure of the lower mantle are still poorly understood. Particularly, the nature and origin of the two large low-shear-velocity provinces (LLSVPs) in the lowermost mantle observed from seismological studies are still debated. In this study, we inverted for the 3D chemical composition and thermal state of the lower mantle based on seismic tomography and mineral elasticity data by employing a Markov chain Monte Carlo framework. The results show a silica-enriched lower mantle with a Mg/Si ratio less than ~1.16, lower than that of the pyrolitic upper mantle (Mg/Si = 1.3). The lateral temperature distributions can be described by a Gaussian distribution with a standard deviation (SD) of 120 to 140 K at 800 to 1,600 km and the SD increases to 250 K at 2,200 km depth. However, the lateral distribution in the lowermost mantle does not follow the Gaussian distribution. We found that the velocity heterogeneities in the upper lower mantle mainly result from thermal anomalies, while those in the lowermost mantle mainly result from compositional or phase variations. The LLSVPs have higher density at the base and lower density above the depth of ~2,700 km than the ambient mantle, respectively. The LLSVPs are found to have ~500 K higher temperature, higher Bridgmanite and iron content than the ambient mantle, supporting the hypothesis that the LLSVPs may originate from an ancient basal magma ocean formed in Earth's early history.

6.
FASEB J ; 38(7): e23581, 2024 Apr 15.
Article in English | MEDLINE | ID: mdl-38551642

ABSTRACT

Human DEAD/H box RNA helicase DDX6 acts as an oncogene in several different types of cancer, where it participates in RNA processing. Nevertheless, the role of DDX6 in pancreatic cancer (PC), together with the underlying mechanism, has yet to be fully elucidated. In the present study, compared with adjacent tissues, the level of DDX6 was abnormally increased in human PC tissues, and this increased level of expression was associated with poor prognosis. Furthermore, the role of DDX6 in PC was investigated by overexpressing or silencing the DDX6 in the PC cell lines, SW1990 and PaTu-8988t. A xenograft model was established by injecting nude mice with either DDX6-overexpressing or DDX6-silenced SW1990 cells. DDX6 overexpression promoted the proliferation and cell cycle transition, inhibited the cell apoptosis of PC cells, and accelerated tumor formation, whereas DDX6 knockdown elicited the opposite effects. DDX6 exerted positive effects on PC. RNA immunoprecipitation assay showed that DDX6 bound to kinesin family member C1 (KIFC1) mRNA, which was further confirmed by RNA pull-down assay. These results suggested that DDX6 positively regulated the expression of KIFC1. KIFC1 overexpression enhanced the proliferative capability of PC cells with DDX6 knockdown and inhibited their apoptosis. By contrast, DDX6 overexpression reversed the inhibitory effect of KIFC1 silencing on tumor proliferation. Subsequently, the transcription factor Yin Yang 1 (YY1) was shown to negatively regulate DDX6 at both the mRNA and protein levels. Dual-luciferase reporter assay verified that YY1 targeted the promoter of DDX6 and inhibited its transcription. High expression levels of YY1 decreased the proliferation of PC cells and promoted cell apoptosis, although these effects were reversed by DDX6 overexpression. Taken together, YY1 may target the DDX6/KIFC1 axis, thereby negatively regulating its expression, leading to an inhibitory effect on pancreatic tumor.


Subject(s)
DEAD-box RNA Helicases , MicroRNAs , Pancreatic Neoplasms , YY1 Transcription Factor , Animals , Humans , Mice , Cell Line, Tumor , Cell Proliferation , DEAD-box RNA Helicases/genetics , DEAD-box RNA Helicases/metabolism , Gene Expression Regulation, Neoplastic , Mice, Nude , MicroRNAs/genetics , Pancreatic Neoplasms/pathology , Proto-Oncogene Proteins/metabolism , RNA, Messenger , YY1 Transcription Factor/genetics , YY1 Transcription Factor/metabolism
7.
FASEB J ; 38(7): e23587, 2024 Apr 15.
Article in English | MEDLINE | ID: mdl-38568835

ABSTRACT

Mastitis is a disease characterized by congestion, swelling, and inflammation of the mammary gland and usually caused by infection with pathogenic microorganisms. Furthermore, the development of mastitis is closely linked to the exogenous pathway of the gastrointestinal tract. However, the regulatory mechanisms governing the gut-metabolism-mammary axis remain incompletely understood. The present study revealed alterations in the gut microbiota of mastitis rats characterized by an increased abundance of the Proteobacteria phylum. Plasma analysis revealed significantly higher levels of L-isoleucine and cholic acid along with 7-ketodeoxycholic acid. Mammary tissue showed elevated levels of arachidonic acid metabolites and norlithocholic acid. Proteomic analysis showed increased levels of IFIH1, Tnfaip8l2, IRGM, and IRF5 in mastitis rats, which suggests that mastitis triggers an inflammatory response and immune stress. Follistatin (Fst) and progesterone receptor (Pgr) were significantly downregulated, raising the risk of breast cancer. Extracellular matrix (ECM) receptors and focal adhesion signaling pathways were downregulated, while blood-milk barrier integrity was disrupted. Analysis of protein-metabolic network regulation revealed that necroptosis, protein digestion and absorption, and arachidonic acid metabolism were the principal regulatory pathways involved in the development of mastitis. In short, the onset of mastitis leads to changes in the microbiota and alterations in the metabolic profiles of various biological samples, including colonic contents, plasma, and mammary tissue. Key manifestations include disturbances in bile acid metabolism, amino acid metabolism, and arachidonic acid metabolism. At the same time, the integrity of the blood-milk barrier is compromised while inflammation is promoted, thereby reducing cell adhesion in the mammary glands. These findings contribute to a more comprehensive understanding of the metabolic status of mastitis and provide new insights into its impact on the immune system.


Subject(s)
Mastitis , Staphylococcal Infections , Female , Humans , Rats , Animals , Staphylococcus aureus/physiology , Proteomics , Arachidonic Acid/metabolism , Mastitis/microbiology , Mastitis/pathology , Mastitis/veterinary , Inflammation/metabolism , Metabolic Networks and Pathways , Mammary Glands, Animal/metabolism , Staphylococcal Infections/metabolism
8.
Nano Lett ; 24(15): 4691-4701, 2024 Apr 17.
Article in English | MEDLINE | ID: mdl-38588212

ABSTRACT

Tumor cells exhibit heightened glucose (Glu) consumption and increased lactic acid (LA) production, resulting in the formation of an immunosuppressive tumor microenvironment (TME) that facilitates malignant proliferation and metastasis. In this study, we meticulously engineer an antitumor nanoplatform, denoted as ZLGCR, by incorporating glucose oxidase, LA oxidase, and CpG oligodeoxynucleotide into zeolitic imidazolate framework-8 that is camouflaged with a red blood cell membrane. Significantly, ZLGCR-mediated consumption of Glu and LA not only amplifies the effectiveness of metabolic therapy but also reverses the immunosuppressive TME, thereby enhancing the therapeutic outcomes of CpG-mediated antitumor immunotherapy. It is particularly important that the synergistic effect of metabolic therapy and immunotherapy is further augmented when combined with immune checkpoint blockade therapy. Consequently, this engineered antitumor nanoplatform will achieve a cooperative tumor-suppressive outcome through the modulation of metabolism and immune responses within the TME.


Subject(s)
Neoplasms , Tumor Microenvironment , Humans , Immunotherapy , Radioimmunotherapy , Glucose , Glucose Oxidase , Immunosuppressive Agents , Lactic Acid , Neoplasms/therapy , Cell Line, Tumor
9.
Plant Cell Physiol ; 65(3): 372-389, 2024 Apr 16.
Article in English | MEDLINE | ID: mdl-38123450

ABSTRACT

Heat-shock transcription factors (HSFs) are crucial for regulating plant responses to heat and various stresses, as well as for maintaining normal cellular functions and plant development. HSFA9 and HSFA2 are two of the Arabidopsis class A HSFs and their expressions are dramatically induced in response to heat shock (HS) stress among all 21 Arabidopsis HSFs. However, the detailed biological roles of their cooperation have not been fully characterized. In this study, we employed an integrated approach that combined bioinformatics, molecular genetics and computational analysis to identify and validate the molecular mechanism that controls seed longevity and thermotolerance in Arabidopsis. The acquisition of tolerance to deterioration was accompanied by a significant transcriptional switch that involved the induction of primary metabolism, reactive oxygen species and unfolded protein response, as well as the regulation of genes involved in response to dehydration, heat and hypoxia. In addition, the cis-regulatory motif analysis in normal stored and controlled deterioration treatment (CDT) seeds confirmed the CDT-repressed genes with heat-shock element (HSE) in their promoters. Using a yeast two-hybrid and molecular dynamic interaction assay, it is shown that HSFA9 acted as a potential regulator that can interact with HSFA2. Moreover, the knock-out mutants of both HSFA9 and HSFA2 displayed a significant reduction in seed longevity. These novel findings link HSF transcription factors with seed deterioration tolerance and longevity.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Thermotolerance , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , DNA-Binding Proteins/metabolism , Gene Expression Regulation, Plant , Heat Shock Transcription Factors/genetics , Heat Shock Transcription Factors/metabolism , Heat-Shock Proteins/genetics , Heat-Shock Response/genetics , Seeds/metabolism , Thermotolerance/genetics , Transcription Factors/metabolism
10.
EMBO J ; 39(6): e103412, 2020 03 16.
Article in English | MEDLINE | ID: mdl-32090355

ABSTRACT

Bacterial cyclic-di-GMP (c-di-GMP) production is associated with biofilm development and the switch from acute to chronic infections. In Pseudomonas aeruginosa, the diguanylate cyclase (DGC) SiaD and phosphatase SiaA, which are co-transcribed as part of a siaABCD operon, are essential for cellular aggregation. However, the detailed functions of this operon and the relationships among its constituent genes are unknown. Here, we demonstrate that the siaABCD operon encodes for a signaling network that regulates SiaD enzymatic activity to control biofilm and aggregates formation. Through protein-protein interaction, SiaC promotes SiaD diguanylate cyclase activity. Biochemical and structural data revealed that SiaB is an unusual protein kinase that phosphorylates SiaC, whereas SiaA phosphatase can dephosphorylate SiaC. The phosphorylation state of SiaC is critical for its interaction with SiaD, which will switch on or off the DGC activity of SiaD and regulate c-di-GMP levels and subsequent virulence phenotypes. Collectively, our data provide insights into the molecular mechanisms underlying the modulation of DGC activity associated with chronic infections, which may facilitate the development of antimicrobial drugs.


Subject(s)
Biofilms/growth & development , Escherichia coli Proteins/metabolism , Phosphorus-Oxygen Lyases/metabolism , Pseudomonas aeruginosa/physiology , Signal Transduction , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cyclic GMP/analogs & derivatives , Cyclic GMP/metabolism , Escherichia coli Proteins/genetics , Gene Expression Regulation, Bacterial , Phenotype , Phosphorus-Oxygen Lyases/genetics , Pseudomonas aeruginosa/enzymology , Pseudomonas aeruginosa/genetics , Pseudomonas aeruginosa/pathogenicity , Virulence
11.
Planta ; 260(1): 24, 2024 Jun 10.
Article in English | MEDLINE | ID: mdl-38858226

ABSTRACT

MAIN CONCLUSION: The resurrection plant Boea hygrometrica selectively recruits and assembles drought-specific microbial communities across the plant-soil compartments, which may benefit plant growth and fitness under extreme drought conditions. Plant-associated microbes are essential for facilitating plant growth and fitness under drought stress. The resurrection plant Boea hygrometrica in natural habitats with seasonal rainfall can survive rapid desiccation, yet their interaction with microbiomes under drought conditions remains unexplored. This study examined the bacterial and fungal microbiome structure and drought response across plant-soil compartments of B. hygrometrica by high-throughput amplicon sequencing of 16S rRNA gene and internal transcribed spacer. Our results demonstrated that the diversity, composition, and functional profile of the microbial community varied considerably across the plant-soil compartments and were strongly affected by drought stress. Bacterial and fungal diversity was significantly reduced from soil to endosphere and belowground to aboveground compartments. The compartment-specific enrichment of the dominant bacteria phylum Cyanobacteriota and genus Methylorubrum in leaf endosphere, genera Pseudonocardia in rhizosphere soil and Actinoplanes in root endosphere, and fungal phylum Ascomycota in the aboveground compartments and genera Knufia in root endosphere and Cladosporium in leaf endosphere composed part of the core microbiota with corresponding enrichment of beneficial functions for plant growth and fitness. Moreover, the recruitment of dominant microbial genera Sphingosinicella and Plectosphaerella, Ceratobasidiaceae mycorrhizal fungi, and numerous plant growth-promoting bacteria involving nutrient supply and auxin regulation was observed in desiccated B. hygrometrica plants. Our results suggest that the stable assembled drought-specific microbial community of B. hygrometrica may contribute to plant survival under extreme environments and provide valuable microbial resources for the microbe-mediated drought tolerance enhancement in crops.


Subject(s)
Droughts , Microbiota , Soil Microbiology , Microbiota/genetics , Stress, Physiological , Bacteria/genetics , Bacteria/classification , Plant Roots/microbiology , Plant Roots/genetics , RNA, Ribosomal, 16S/genetics , Fungi/physiology , Fungi/genetics , Rhizosphere , Brassicaceae/microbiology , Brassicaceae/genetics , Brassicaceae/physiology , Plant Leaves/microbiology , Plant Leaves/genetics
12.
Planta ; 259(2): 47, 2024 Jan 29.
Article in English | MEDLINE | ID: mdl-38285274

ABSTRACT

MAIN CONCLUSION: Substantial advancements have been made in our comprehension of vegetative desiccation tolerance in resurrection plants, and further research is still warranted to elucidate the mechanisms governing distinct cellular adaptations. Resurrection plants are commonly referred to as a small group of extremophile vascular plants that exhibit vegetative desiccation tolerance (VDT), meaning that their vegetative tissues can survive extreme drought stress (> 90% water loss) and subsequently recover rapidly upon rehydration. In contrast to most vascular plants, which typically employ water-saving strategies to resist partial water loss and optimize water absorption and utilization to a limited extent under moderate drought stress, ultimately succumbing to cell death when confronted with severe and extreme drought conditions, resurrection plants have evolved unique mechanisms of VDT, enabling them to maintain viability even in the absence of water for extended periods, permitting them to rejuvenate without harm upon water contact. Understanding the mechanisms associated with VDT in resurrection plants holds the promise of expanding our understanding of how plants adapt to exceedingly arid environments, a phenomenon increasingly prevalent due to global warming. This review offers an updated and comprehensive overview of recent advances in VDT within resurrection plants, with particular emphasis on elucidating the metabolic and cellular adaptations during desiccation, including the intricate processes of cell wall folding and the prevention of cell death. Furthermore, this review highlights existing unanswered questions in the field, suggests potential avenues for further research to gain deeper insights into the remarkable VDT adaptations observed in resurrection plants, and highlights the potential application of VDT-derived techniques in crop breeding to enhance tolerance to extreme drought stress.


Subject(s)
Craterostigma , Tracheophyta , Craterostigma/genetics , Desiccation , Plant Breeding , Cell Death , Water
13.
Opt Express ; 32(2): 2097-2105, 2024 Jan 15.
Article in English | MEDLINE | ID: mdl-38297746

ABSTRACT

In this paper, a 4L-shaped graphene patterned polarization-insensitive plasmon-induced transparency (PIT) metamaterial structure is proposed. The photoelectric switch based on this structure supports a variety of light sources, such as linearly polarized light with different polarization directions, left rotation circularly polarized light (LCP) and right rotation circularly polarized light (RCP). And the switch has excellent performance in the case of different light sources, the amplitude modulation is as high as 99.01%, and the insertion loss is as low as 0.04 dB. In addition, the PIT metamaterial has a high refractive index sensitivity of up to 49156 nm/RIU. The group index of the PIT metamaterial is as high as 980, which can achieve excellent slow light effect. This study provides a scheme and guidance for the design of optoelectronic devices.

14.
Opt Lett ; 49(18): 5328-5331, 2024 Sep 15.
Article in English | MEDLINE | ID: mdl-39270297

ABSTRACT

Metamaterials have opened up a new field of electromagnetic wave stealth that can achieve cross-band electromagnetic wave stealth through high electromagnetic wave absorption and low infrared emission. However, traditional cross-band stealth metamaterials make covering the terahertz band challenging and have certain design flaws. This Letter introduces an innovative cross-band electromagnetic wave stealth metasurface design that can achieve cross-band stealth in the infrared, microwave, and THz bands. We use phase change materials and the gradient principle to achieve GHz and THz cross-band absorption. We also design surface height-covered low infrared emitting materials, which give them lower infrared emissivity. These functions give it enormous potential in military applications, and using phase change materials for cross-band absorption also provides new, to our knowledge, ideas for multifunctional stealth materials.

15.
Pancreatology ; 2024 Aug 13.
Article in English | MEDLINE | ID: mdl-39216997

ABSTRACT

BACKGROUND: Helix-loop-helix transcription factor 4 (HTF4) as an anti-cancer target has been reported in many human cancers, but limited data exists regarding the effect of HTF4 in pancreatic cancer. In this study, we aimed to investigate the role of HTF4 in pancreatic cancer. METHODS: The expression levels of HTF4 in clinical pancreatic cancer samples were measured. HTF4 was knocked down or overexpressed in pancreatic cancer cells and was subsequently tested for bio-function using in vitro assays and in vivo. The regulation of HTF4 on GID2 was assessed via bioinformatic tools and dual-luciferase reporter assay. RESULTS: We found that HTF4 was highly expressed in pancreatic cancer tissues and correlated with poor patient prognosis. In addition, knocking down HTF4 expression inhibited cell proliferation, migration, and invasion, whereas HTF4 overexpression exerted the opposite effect. Moreover, HTF4 promoted tumor growth and metastasis in pancreatic cancer. Further, HTF4 bound to the GID2 promoter region and promoted transcriptional activation of GID2 in pancreatic cancer cells. GID2 knockdown suppressed HTF4-induced malignant behaviors of pancreatic cancer cells. CONCLUSIONS: Our findings suggest that the HTF4/GID2 axis accelerates the progression of pancreatic cancer, providing a potential therapeutic target and prognostic indicator for the treatment of pancreatic cancer patients.

16.
Inorg Chem ; 63(24): 11125-11134, 2024 Jun 17.
Article in English | MEDLINE | ID: mdl-38833320

ABSTRACT

The hydrogen (H2) evolution rates of photocatalysts suffer from weak oxidation and reduction ability and low photogenerated charge carrier separation efficiency. Herein, by combining band-gap structure optimization and vacancy modulation through a one-step hydrothermal method, In2O3 containing oxygen vacancy (Ov/In2O3) is simply introduced into In2S3 to promote photocatalytic hydrogen evolution. Specifically, the change in the sulfur source ratio can induce the coexistence of Ov/In2O3 and In2S3 in a high-temperature hydrothermal process. Under light irradiation, In2S3@Ov/In2O3-0.1 nanosheets hold a remarkable average H2 evolution rate up to 4.04 mmol g-1 h-1, which is 32.14, 11.91, and 2.25-fold better than those of pristine In2S3, In2S3@Ov/In2O3-0.02, and In2S3@Ov/In2O3-0.25 nanosheets, respectively. The ultraviolet-visible (UV-vis) diffuse reflectance and photoluminescence (PL) spectra reveal that the formation of Ov/In2O3 in In2S3 optimizes the band-gap structure and accelerates the migration of the photogenerated charge carrier of In2S3@Ov/In2O3-x nanosheets, respectively. Both the enhancement of oxidation and reduction ability and photogenerated charge carrier separation ability are responsible for the remarkable improvement in photocatalytic H2 evolution performance. This work provides a new strategy to prepare a composite of metal sulfide and metal oxide through a one-step hydrothermal method.

17.
Inorg Chem ; 63(5): 2525-2532, 2024 Feb 05.
Article in English | MEDLINE | ID: mdl-38252455

ABSTRACT

Organic-inorganic halide hybrids have been extensively developed and used in optoelectronic devices because of their superior performance such as ease of assembly, flexible structural tunability, and excellent optoelectronic properties. Ferroelastic strain might be used to modulate and control photoelectric properties such as photovoltaic voltage, while organic-inorganic hybrid ferroelastic semiconductors remain relatively unexplored. Herein, we successfully design a new Sn-base, lead-free hybrid ferroelastic semiconductor, [TPMA]2[SnCl6] (TPMA = benzyl trimethylammonium). It undergoes a high-temperature -3mF-1-type ferroelastic phase transition at 408 K, and intriguingly, its ferroelastic domains can be simultaneously switched under the stimulation of external heat and stress. The ferroelastic phase transition might be derived from the order-disorder transition of organic cations during heating and cooling. Moreover, [TPMA]2[SnCl6] also demonstrates a high-temperature dielectric switching property around 408 K, which has good stability and reproducibility. With those benefits, [TPMA]2[SnCl6] shows great potential in applications such as energy storage devices, optoelectronic devices, shape memory, intelligent switches, and so on.

18.
BMC Pregnancy Childbirth ; 24(1): 414, 2024 Jun 07.
Article in English | MEDLINE | ID: mdl-38849756

ABSTRACT

CircRNAs are a class of endogenous non-coding RNAs implicated in the pathogenesis of many pregnancy related diseases, one of which is pre-eclampsia (PE). This study aims to investigate the role of CircPAPPA2 (circbase ID: hsa_circ_0015382) in regulating the migration and invasion of trophoblast cells. RNA sequencing was used to identify the differentially expressed circRNAs in placenta of PE and normal pregnant women. Quantitative polymerase chain reaction (qRT-PCR) was used to verify the expression of circPAPPA2 and two miRNAs (miR-942-5p, 5006-3p) in placenta of PE and normal pregnant women. CCK8 and transwell experiments were performed to assess the function of circPAPPA2 in PE development.The interaction between circPAPPA2 and miR-942-5p/miR-5006-3p was verified by dual-luciferase reporter assay. Finally, bioinformatics analyzed with gene ontology, Kyoto Encyclopedia of the target genes. The results showed that the expression of circPAPPA2 was increased in placenta of PE pregnant women. Also, circPAPPA2 impedes trophoblasts cell proliferation and invasion. Moreover, the expression of circPAPPA2 was positively correlated with systolic blood pressure and urine protein. In addition, circPAPPA2 serves as a sponge of miR-942-5p and miR-5006-3p. In conclusion, CircPAPPA2 regulates trophoblasts cell proliferation and invasion by mediating the miR-942/miR-5006-3p.


Subject(s)
MicroRNAs , Placenta , Pre-Eclampsia , RNA, Circular , Trophoblasts , Humans , Pre-Eclampsia/genetics , Pre-Eclampsia/metabolism , Female , MicroRNAs/genetics , MicroRNAs/metabolism , Pregnancy , RNA, Circular/genetics , Trophoblasts/metabolism , Placenta/metabolism , Adult , Cell Movement/genetics , Cell Proliferation/genetics , Case-Control Studies
19.
BMC Geriatr ; 24(1): 462, 2024 May 27.
Article in English | MEDLINE | ID: mdl-38802742

ABSTRACT

BACKGROUND: The feasibility and safety of laparoscopic pancreatoduodenectomy (LPD) in elderly patients is still controversial. This study aimed to compare the clinical outcomes of LPD and open pancreatoduodenectomy (OPD) in elderly patients. METHODS: Clinical and follow-up data of elderly patients (≥ 65 years) who underwent LPD or OPD between 2015 and 2022 were retrospectively analyzed. A 1:1 propensity score-matching (PSM) analysis was performed to minimize differences between groups. Univariate and multivariate logistic regression analysis were used to select independent prognostic factors for 90-day mortality. RESULTS: Of the 410 elderly patients, 236 underwent LPD and 174 OPD. After PSM, the LPD group had a less estimated blood loss (EBL) (100 vs. 200 mL, P < 0.001), lower rates of intraoperative transfusion (10.4% vs. 19.0%, P = 0.029), more lymph node harvest (11.0 vs. 10.0, P = 0.014) and shorter postoperative length of stay (LOS) (13.0 vs. 16.0 days, P = 0.013). There were no significant differences in serious complications, reoperation, 90-day readmission and mortality rates (all P > 0.05). Multivariate logistic regression analysis showed that post-pancreatectomy hemorrhage (PPH) was an independent risk factor for 90-day mortality. Elderly patients with pancreatic ductal adenocarcinoma (PDAC) who underwent LPD or OPD had similar overall survival (OS) (22.5 vs.20.4 months, P = 0.672) after PSM. CONCLUSIONS: It is safe and feasible for elderly patients to undergo LPD with less EBL and a shorter postoperative LOS. There was no statistically significant difference in long-term survival outcomes between elderly PDAC patients who underwent LPD or OPD.


Subject(s)
Laparoscopy , Pancreatic Neoplasms , Pancreaticoduodenectomy , Propensity Score , Humans , Pancreaticoduodenectomy/methods , Pancreaticoduodenectomy/adverse effects , Pancreaticoduodenectomy/trends , Aged , Male , Female , Laparoscopy/methods , Laparoscopy/adverse effects , Laparoscopy/trends , Retrospective Studies , Pancreatic Neoplasms/surgery , Treatment Outcome , Postoperative Complications/epidemiology , Aged, 80 and over , Time Factors , Length of Stay/trends
20.
Neurosurg Rev ; 47(1): 74, 2024 Feb 05.
Article in English | MEDLINE | ID: mdl-38315259

ABSTRACT

Few studies have explored the effect of a flow-diverter device (FD) on blood flow in the A1 segment of the anterior cerebral artery (ACA), after treatment of intracranial aneurysms in the bifurcation region of the internal carotid artery (ICA). The main objective of this article is to investigate the factors that affect A1 blood flow after FD covers the A1 artery. This is a single-center, retrospective study. Data were collected retrospectively from our center, and patients whose FDs were placed for treatment from the terminal of the ICA to the M1 segment were analyzed. A total of 42 patients were included in the study. Immediate post-procedural angiography following device placement revealed decreased blood flow in the A1 of 15 (35.7%) patients and complete occlusion of the A1 segment in 11 (26.2%) patients. During an average follow-up period of 9.8 months, the A1 segment was ultimately occluded in 25 patients (59.5%) and decreased blood flow in 4 patients (9.5%). When using FD to cover the A1 artery for the treatment of intracranial aneurysms, patients with preoperative opening of the anterior communicating artery (AcomA) are more prone to occlusion or decreased blood flow of the A1 artery, compared to patients without opening.


Subject(s)
Embolization, Therapeutic , Intracranial Aneurysm , Humans , Anterior Cerebral Artery/surgery , Retrospective Studies , Intracranial Aneurysm/therapy , Treatment Outcome , Hemodynamics , Stents
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