Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 46
Filter
1.
Proc Natl Acad Sci U S A ; 120(6): e2212003120, 2023 02 07.
Article in English | MEDLINE | ID: mdl-36719915

ABSTRACT

While establishing an invasive infection, the dormant conidia of Aspergillus fumigatus transit through swollen and germinating stages, to form hyphae. During this morphotype transition, the conidial cell wall undergoes dynamic remodeling, which poses challenges to the host immune system and antifungal drugs. However, such cell wall reorganization during conidial germination has not been studied so far. Here, we explored the molecular rearrangement of Aspergillus fumigatus cell wall polysaccharides during different stages of germination. We took advantage of magic-angle spinning NMR to investigate the cell wall polysaccharides, without employing any destructive method for sample preparation. The breaking of dormancy was associated with a significant change in the molar ratio between the major polysaccharides ß-1,3-glucan and α-1,3-glucan, while chitin remained equally abundant. The use of various polarization transfers allowed the detection of rigid and mobile polysaccharides; the appearance of mobile galactosaminogalactan was a molecular hallmark of germinating conidia. We also report for the first time highly abundant triglyceride lipids in the mobile matrix of conidial cell walls. Water to polysaccharides polarization transfers revealed an increased surface exposure of glucans during germination, while chitin remained embedded deeper in the cell wall, suggesting a molecular compensation mechanism to keep the cell wall rigidity. We complement the NMR analysis with confocal and atomic force microscopies to explore the role of melanin and RodA hydrophobin on the dormant conidial surface. Exemplified here using Aspergillus fumigatus as a model, our approach provides a powerful tool to decipher the molecular remodeling of fungal cell walls during their morphotype switching.


Subject(s)
Aspergillus fumigatus , Fungal Proteins , Aspergillus fumigatus/metabolism , Spores, Fungal/metabolism , Fungal Proteins/metabolism , Polysaccharides/metabolism , Chitin/metabolism , Glucans/metabolism , Cell Wall/metabolism
2.
Int J Mol Sci ; 23(4)2022 Feb 18.
Article in English | MEDLINE | ID: mdl-35216412

ABSTRACT

Classical treatments of shoulder instability are associated with recurrence. To determine whether the modification of the capsule properties may be an alternative procedure, the effect of crosslinking treatment on the structure and mechanical properties of diseased human shoulder capsules was investigated. Joint capsules harvested from patients during shoulder surgery (n = 5) were treated or not with UV and/or riboflavin (0.1%, 1.0% and 2.5%). The structure and the mechanical properties of the capsules were determined by atomic force microscopy. The effect of treatments on cell death was investigated. Collagen fibrils were well-aligned and adjacent to each other with a D-periodicity of 66.9 ± 3.2 nm and a diameter of 71.8 ± 15.4 nm in control untreated capsules. No effect of treatments was observed on the organization of the collagen fibrils nor on their intrinsic characteristics, including D-periodicity or their mean diameter. The treatments also did not induce cell death. In contrast, UV + 2.5% riboflavin induced capsule stiffness, as revealed by the increased Young's modulus values (p < 0.0001 for each patient). Our results showed that the crosslinking procedure changed the biomechanics of diseased capsules, while keeping their structural organisation unchanged at the single fibril level. The UV/riboflavin crosslinking procedure may be a promising way to preserve the functions of collagen-based tissues and tune their elasticity for clinically relevant treatments.


Subject(s)
Collagen/chemistry , Collagen/pharmacology , Cross-Linking Reagents/pharmacology , Shoulder Joint/drug effects , Shoulder/physiology , Biomechanical Phenomena/drug effects , Cross-Linking Reagents/chemistry , Elastic Modulus/drug effects , Elasticity/drug effects , Extracellular Matrix/drug effects , Humans , Joint Instability , Microscopy, Atomic Force/methods , Riboflavin/chemistry , Riboflavin/pharmacology , Ultraviolet Rays
3.
Cell Microbiol ; 21(5): e12994, 2019 05.
Article in English | MEDLINE | ID: mdl-30552790

ABSTRACT

If the mycelium of Aspergillus fumigatus is very short-lived in the laboratory, conidia can survive for years. This survival capacity and extreme resistance to environmental insults is a major biological characteristic of this fungal species. Moreover, conidia, which easily reach the host alveola, are the infective propagules. Earlier studies have shown the role of some molecules of the outer conidial layer in protecting the fungus against the host defense. The outer layer of the conidial cell wall, directly in contact with the host cells, consists of α-(1,3)-glucan, melanin, and proteinaceous rodlets. This study is focused on the global importance of this outer layer. Single and multiple mutants without one to three major components of the outer layer were constructed and studied. The results showed that the absence of the target molecules resulting from multiple gene deletions led to unexpected phenotypes without any logical additivity. Unexpected compensatory cell wall surface modifications were indeed observed, such as the synthesis of the mycelial virulence factor galactosaminogalactan, the increase in chitin and glycoprotein concentration or particular changes in permeability. However, sensitivity of the multiple mutants to killing by phagocytic host cells confirmed the major importance of melanin in protecting conidia.


Subject(s)
Aspergillus fumigatus/metabolism , Cell Wall/metabolism , Melanins/metabolism , Spores, Fungal/metabolism , Aspergillosis/immunology , Aspergillus fumigatus/drug effects , Aspergillus fumigatus/genetics , Aspergillus fumigatus/pathogenicity , Azoles/pharmacology , Benzenesulfonates/pharmacology , Caspofungin/pharmacology , Cell Wall/drug effects , Cell Wall/genetics , Chitin/metabolism , Congo Red/pharmacology , Fungal Proteins/metabolism , Glucans/genetics , Glucans/metabolism , Glycoproteins/genetics , Glycoproteins/metabolism , Humans , Hydrophobic and Hydrophilic Interactions , Melanins/genetics , Melanins/physiology , Monocytes/immunology , Mycelium/metabolism , Phagocytes/metabolism , Polysaccharides/metabolism , Pyocyanine/pharmacology , Spores, Fungal/cytology , Spores, Fungal/genetics , Virulence Factors/metabolism
4.
Biomacromolecules ; 20(12): 4522-4534, 2019 12 09.
Article in English | MEDLINE | ID: mdl-31710810

ABSTRACT

A comprehensive understanding of the mechanism by which type I collagen (Col) interacts with hydroxyapatite nanoparticles (Hap NPs) in aqueous solutions is a pivotal step for guiding the design of biologically relevant nanocomposites with controlled hierarchical structure. In this paper we use a variety of Hap NPs differing by their shape (rod vs platelet) and their size (∼30 vs ∼130 nm) and investigate their mechanism(s) of interaction with collagen. The addition of collagen to the Hap suspensions induces different effects that strongly depend on the nanoparticle type. Interestingly, the use of small rods, typically with ∼30 nm of length (R30), leads to the formation of assembled collagen fibrils decorated with Hap nanocrystals which, in turn, self-assemble progressively to form larger fibrillar Hap-Col composite. The crystals decorating collagen provide "intrinsic" negative charges to the fibrillar objects that allow their incorporation in three-dimensional structure using layer-by-layer (LbL) assembly. This offers a straightforward way to construct a collagen-based hybrid material with well-defined hierarchy under near-physiological conditions. In situ, QCM-D monitoring revealed the buildup of soft and highly hydrated hybrid (PAH/R30-Col)n multilayers for which the mechanism of growth was very different from that observed for polyelectrolytes and nanoparticles without collagen (PAH/R30). The LbL assembly of crystal-decorated collagen yields a hierarchical nanostructured film whose thickness and roughness can be modulated by the addition of salt and incorporate fibrillar objects of about 400 nm in width and few micrometers in length, as probed by AFM. The approach described in this work provides a relevant way to better control the (supra)molecular assembly of Col and Hap NPs with the perspective of developing hierarchical Hap-Col nanocomposites with tuned properties for various biomedical applications.


Subject(s)
Collagen/chemistry , Durapatite/chemistry , Nanocomposites/chemistry , Nanoparticles/chemistry
5.
Int J Mol Sci ; 19(6)2018 Jun 05.
Article in English | MEDLINE | ID: mdl-29874861

ABSTRACT

Heparin-binding haemagglutinin (HBHA) is a surface-exposed virulence factor of Mycobacterium tuberculosis and is involved in the binding of mycobacteria to non-phagocytic cells, allowing for extra-pulmonary dissemination of the bacilli. Despite its surface exposure, HBHA is not produced as a pre-protein containing a typical cleavable N-terminal signal peptide and is thus likely secreted by a Sec-independent, as of yet unknown mechanism. Here, we used the bacterial adenylate cyclase two-hybrid system to identify the proteins encoded by rv0613c and mmpL14 as being able to interact with HBHA. Our study was focused on Rv0613c, as it showed more consistent interactions with HBHA than MmpL14. Deletion of its orthologous gene MSMEG_1285 in recombinant Mycobacterium smegmatis producing HBHA from M. tuberculosis resulted in the loss of proper surface exposure of HBHA, as evidenced by atomic force microscopy. Furthermore, the lack of MSMEG_1285 also abolished the clumping phenotype and rough colony morphology of the recombinant M. smegmatis and reduced its adherence to A549 epithelial cells. These phenotypes have previously been associated with surface-exposed HBHA. Thus, MSMEG_1285 is directly involved in the proper cell-surface exposure of HBHA. These observations identify MSMEG_1285/Rv0613c as the first accessory protein involved in the cell surface exposure of HBHA.


Subject(s)
Bacterial Proteins/genetics , Membrane Proteins/genetics , Mycobacterium tuberculosis/genetics , Tuberculosis/genetics , A549 Cells , Amino Acid Sequence/genetics , Cell Membrane/genetics , Epithelial Cells/metabolism , Humans , Mycobacterium smegmatis/genetics , Mycobacterium smegmatis/pathogenicity , Mycobacterium tuberculosis/pathogenicity , Tuberculosis/microbiology , Virulence Factors/genetics
6.
Mol Cell Proteomics ; 12(12): 3935-47, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24002364

ABSTRACT

Surface proteins of Gram-positive bacteria play crucial roles in bacterial adhesion to host tissues. Regarding commensal or probiotic bacteria, adhesion to intestinal mucosa may promote their persistence in the gastro-intestinal tract and their beneficial effects to the host. In this study, seven Lactococcus lactis strains exhibiting variable surface physico-chemical properties were compared for their adhesion to Caco-2 intestinal epithelial cells. In this test, only one vegetal isolate TIL448 expressed a high-adhesion phenotype. A nonadhesive derivative was obtained by plasmid curing from TIL448, indicating that the adhesion determinants were plasmid-encoded. Surface-exposed proteins in TIL448 were analyzed by a proteomic approach consisting in shaving of the bacterial surface with trypsin and analysis of the released peptides by LC-MS/MS. As the TIL448 complete genome sequence was not available, the tryptic peptides were identified by a mass matching approach against a database including all Lactococcus protein sequences and the sequences deduced from partial DNA sequences of the TIL448 plasmids. Two surface proteins, encoded by plasmids in TIL448, were identified as candidate adhesins, the first one displaying pilin characteristics and the second one containing two mucus-binding domains. Inactivation of the pilin gene abolished adhesion to Caco-2 cells whereas inactivation of the mucus-binding protein gene had no effect on adhesion. The pilin gene is located inside a cluster of four genes encoding two other pilin-like proteins and one class-C sortase. Synthesis of pili was confirmed by immunoblotting detection of high molecular weight forms of pilins associated to the cell wall as well as by electron and atomic force microscopy observations. As a conclusion, surface proteome analysis allowed us to detect pilins at the surface of L. lactis TIL448. Moreover we showed that pili appendages are formed and involved in adhesion to Caco-2 intestinal epithelial cells.


Subject(s)
Bacterial Proteins/genetics , Fimbriae Proteins/genetics , Fimbriae, Bacterial/genetics , Gene Expression Regulation, Bacterial , Lactococcus lactis/genetics , Proteome/genetics , Adhesins, Bacterial/genetics , Adhesins, Bacterial/metabolism , Amino Acid Sequence , Aminoacyltransferases/genetics , Aminoacyltransferases/metabolism , Bacterial Adhesion , Bacterial Proteins/metabolism , Caco-2 Cells , Chromatography, Liquid , Cysteine Endopeptidases/genetics , Cysteine Endopeptidases/metabolism , Fimbriae Proteins/metabolism , Fimbriae, Bacterial/metabolism , Fimbriae, Bacterial/ultrastructure , Humans , Intestines/cytology , Intestines/microbiology , Lactococcus lactis/metabolism , Lactococcus lactis/ultrastructure , Microscopy, Electron , Molecular Sequence Annotation , Molecular Sequence Data , Multigene Family , Peptide Fragments/analysis , Plasmids , Probiotics/chemistry , Proteolysis , Proteome/metabolism , Tandem Mass Spectrometry , Trypsin/chemistry
7.
J Cell Sci ; 125(Pt 18): 4189-95, 2012 Sep 15.
Article in English | MEDLINE | ID: mdl-23077172

ABSTRACT

Living cells use cell surface proteins, such as mechanosensors, to constantly sense and respond to their environment. However, the way in which these proteins respond to mechanical stimuli and assemble into large complexes remains poorly understood at the molecular level. In the past years, atomic force microscopy (AFM) has revolutionized the way in which biologists analyze cell surface proteins to molecular resolution. In this Commentary, we discuss how the powerful set of advanced AFM techniques (e.g. live-cell imaging and single-molecule manipulation) can be integrated with the modern tools of molecular genetics (i.e. protein design) to study the localization and molecular elasticity of individual mechanosensors on the surface of living cells. Although we emphasize recent studies on cell surface proteins from yeasts, the techniques described are applicable to surface proteins from virtually all organisms, from bacteria to human cells.


Subject(s)
Cell Membrane/metabolism , Mechanotransduction, Cellular , Membrane Proteins/metabolism , Microscopy, Atomic Force/methods , Animals , Biomechanical Phenomena , Humans , Imaging, Three-Dimensional
8.
Open Res Eur ; 3: 187, 2023.
Article in English | MEDLINE | ID: mdl-39118808

ABSTRACT

Background: Atomic force microscopy (AFM) is one of the main techniques used to characterize the mechanical properties of soft biological samples and biomaterials at the nanoscale. Despite efforts made by the AFM community to promote open-source data analysis tools, standardization continues to be a significant concern in a field that requires common analysis procedures. AFM-based mechanical measurements involve applying a controlled force to the sample and measure the resulting deformation in the so-called force-distance curves. These may include simple approach and retract or oscillatory cycles at various frequencies (microrheology). To extract quantitative parameters, such as the elastic modulus, from these measurements, AFM measurements are processed using data analysis software. Although open tools exist and allow obtaining the mechanical properties of the sample, most of them only include standard elastic models and do not allow the processing of microrheology data. In this work, we have developed an open-source software package (called PyFMLab, as of python force microscopy laboratory) capable of determining the viscoelastic properties of samples from both conventional force-distance curves and microrheology measurements. Methods: PyFMLab has been written in Python, which provides an accessible syntax and sufficient computational efficiency. The software features were divided into separate, self-contained libraries to enhance code organization and modularity and to improve readability, maintainability, testability, and reusability. To validate PyFMLab, two AFM datasets, one composed of simple force curves and another including oscillatory measurements, were collected on HeLa cells. Results: The viscoelastic parameters obtained on the two datasets analysed using PyFMLab were validated against data processing proprietary software and against validated MATLAB routines developed before obtaining equivalent results. Conclusions: Its open-source nature and versatility makes PyFMLab an open-source solution that paves the way for standardized viscoelastic characterization of biological samples from both force-distance curves and microrheology measurements.

9.
Nanoscale ; 15(40): 16371-16380, 2023 Oct 20.
Article in English | MEDLINE | ID: mdl-37789717

ABSTRACT

Atomic force microscopy (AFM) has become indispensable for studying biological and medical samples. More than two decades of experiments have revealed that cancer cells are softer than healthy cells (for measured cells cultured on stiff substrates). The softness or, more precisely, the larger deformability of cancer cells, primarily independent of cancer types, could be used as a sensitive marker of pathological changes. The wide application of biomechanics in clinics would require designing instruments with specific calibration, data collection, and analysis procedures. For these reasons, such development is, at present, still very limited, hampering the clinical exploitation of mechanical measurements. Here, we propose a standardized operational protocol (SOP), developed within the EU ITN network Phys2BioMed, which allows the detection of the biomechanical properties of living cancer cells regardless of the nanoindentation instruments used (AFMs and other indenters) and the laboratory involved in the research. We standardized the cell cultures, AFM calibration, measurements, and data analysis. This effort resulted in a step-by-step SOP for cell cultures, instrument calibration, measurements, and data analysis, leading to the concordance of the results (Young's modulus) measured among the six EU laboratories involved. Our results highlight the importance of the SOP in obtaining a reproducible mechanical characterization of cancer cells and paving the way toward exploiting biomechanics for diagnostic purposes in clinics.


Subject(s)
Cell Culture Techniques , Elastic Modulus , Microscopy, Atomic Force/methods , Biomechanical Phenomena
10.
Langmuir ; 28(49): 16738-44, 2012 Dec 11.
Article in English | MEDLINE | ID: mdl-23198968

ABSTRACT

Currently, there is a growing need for methods that can quantify and map the molecular interactions of biological samples, both with high-force sensitivity and high spatial resolution. Force-volume imaging is a valuable atomic force microscopy (AFM) modality for probing specific sites on biosurfaces. However, the low speed and poor spatial resolution of this method have severely hampered its widespread use in life science research. We use a novel AFM mode (i.e., peak force tapping with chemically functionalized tips) to probe the localization and interactions of chemical and biological sites on living cells at high speed and high resolution (8 min for 1 µm × 1 µm images at 512 pixels × 512 pixels). First, we demonstrate the ability of the method to quantify and image hydrophobic forces on organic surfaces and on microbial pathogens. Next, we detect single sensor proteins on yeast cells, and we unravel their mechanical properties in relation to cellular function. Owing to its key capabilities (quantitative mapping, resolution of a few nanometers, and true correlation with topography), this novel biochemically sensitive imaging technique is a powerful complement to other advanced AFM modes for quantitative, high-resolution bioimaging.


Subject(s)
Fungal Proteins/chemistry , Microscopy, Atomic Force/methods , Molecular Imaging/methods , Aspergillus fumigatus/chemistry , Aspergillus fumigatus/genetics , Aspergillus fumigatus/ultrastructure , Fungal Proteins/genetics , Histidine/chemistry , Histidine/genetics , Hydrophobic and Hydrophilic Interactions , Intracellular Signaling Peptides and Proteins/chemistry , Intracellular Signaling Peptides and Proteins/genetics , Membrane Glycoproteins/chemistry , Membrane Glycoproteins/genetics , Microscopy, Atomic Force/instrumentation , Molecular Imaging/instrumentation , Oligopeptides/chemistry , Oligopeptides/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/ultrastructure , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/genetics , Spores, Fungal/chemistry , Spores, Fungal/genetics , Spores, Fungal/ultrastructure , Surface Properties
11.
Langmuir ; 28(4): 2211-6, 2012 Jan 31.
Article in English | MEDLINE | ID: mdl-22149133

ABSTRACT

In living cells, sophisticated functional interfaces are generated through the self-assembly of bioactive building blocks. Prominent examples of such biofunctional surfaces are bacterial nanostructures referred to as pili. Although these proteinaceous filaments exhibit remarkable structure and functions, their potential to design bioinspired self-assembled systems has been overlooked. Here, we used atomic force microscopy (AFM) to explore the supramolecular organization and self-assembly of pili from the Gram-positive probiotic bacterium Lactobacillus rhamnosus GG (LGG). High-resolution AFM imaging of cell preparations adsorbed on mica revealed pili not only all around the cells, but also in the form of remarkable star-like structures assembled on the mica surface. Next, we showed that two-step centrifugation is a simple procedure to separate large amounts of pili, even though through their synthesis they are covalently anchored to the cell wall. We also found that the centrifuged pili assemble as long bundles. We suggest that these bundles originate from a complex interplay of mechanical effects (centrifugal force) and biomolecular interactions involving the SpaC cell adhesion pilin subunit (lectin-glycan bonds, hydrophobic bonds). Supporting this view, we found that pili isolated from an LGG mutant lacking hydrophilic exopolysaccharides show an increased tendency to form tight bundles. These experiments demonstrate that AFM is a powerful platform for visualizing individual pili on bacterial surfaces and for unravelling their two-dimensional assembly on solid surfaces. Our data suggest that bacterial pili may provide a generic approach in nanobiotechnology for elaborating functional supramolecular interfaces assembled from bioactive building blocks.


Subject(s)
Fimbriae, Bacterial , Lacticaseibacillus rhamnosus/cytology , Microscopy, Atomic Force , Nanostructures , Air , Aluminum Silicates/chemistry , Biotechnology , Cell Aggregation , Surface Properties
12.
Nanoscale ; 14(24): 8691-8708, 2022 Jun 23.
Article in English | MEDLINE | ID: mdl-35673929

ABSTRACT

The extracellular matrix (ECM) of articular cartilage is a three-dimensional network mainly constituted of entangled collagen fibrils and interfibrillar aggrecan aggregates. During the development of osteoarthritis (OA), the most common musculoskeletal disorder, the ECM is subjected to a combination of chemical and structural changes that play a pivotal role in the initiation and the progress of the disease. While the molecular mechanisms involved in the pathological remodelling of the ECM are considered as decisive, they remain, however, not completely elucidated. Herein, we report a relevant way for unravelling the role and nature of OA progress on human cartilage tissues, in terms of chemical composition and morphological and mechanical properties at the level of supramolecular assemblies constituting the cartilage ECM. For this purpose, we used X-ray photoelectron spectroscopy (XPS), and developed an innovative methodological approach that provides the molecular composition of the ECM. Moreover, we used atomic force microscopy (AFM) to probe the tissues at the level of individual collagen fibrils, both imaging and force spectroscopy modes being explored to this end. Taken together, these nanoscale characterization studies reveal the existence of two stages in the OA progress. At the early stage, a marked increase in the aggrecan and collagen content is observed, reflecting the homeostatic chondrocyte activity that tends to repair the cartilage ECM. At the late stage, we observe a failed attempt to stabilize and/or restore the tissue, yielding significant degradation of the supramolecular assemblies. This suggests an imbalance in the chondrocyte activity that turns in favor of catabolic events. Chemical changes are also accompanied by ECM structural changes and stiffening. Interestingly, we showed the possibility to mimic the imbalanced activities of chondrocytes by applying enzymatic digestions of healthy cartilage, through the combined action of hyaluronidase and collagenase. This yields damage strictly analogous to that observed at high OA severity. These findings bring mechanistic insights leading to a better understanding of the mechanism by which OA is initiated and progresses in the cartilage ECM. They offer guidelines for the development of curative treatments, such as targeting the homeostatic balance of chondrocyte metabolism through the control of enzymatic reactions involved in catabolic processes.


Subject(s)
Cartilage, Articular , Osteoarthritis , Aggrecans/metabolism , Cartilage, Articular/pathology , Chondrocytes , Collagen/metabolism , Extracellular Matrix/metabolism , Humans , Osteoarthritis/pathology
13.
Nat Chem Biol ; 5(11): 857-62, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19767735

ABSTRACT

Here we report on in vivo measurement of the mechanical behavior of a cell surface sensor using single-molecule atomic force microscopy. We focus on the yeast wall stress component sensor Wsc1, a plasma membrane protein that is thought to function as a rigid probe of the cell wall status. We first map the distribution of individual histidine-tagged sensors on living yeast cells by scanning the cell surface with atomic force microscopy tips carrying nitrilotriacetate groups. We then show that Wsc1 behaves like a linear nanospring that is capable of resisting high mechanical force and of responding to cell surface stress. Both a genomic pmt4 deletion and the insertion of a stretch of glycines in Wsc1 result in substantial alterations in protein spring properties, supporting the important role of glycosylation at the extracellular serine/threonine-rich region.


Subject(s)
Biosensing Techniques , Cell Membrane/physiology , Microscopy, Atomic Force/methods , Saccharomyces cerevisiae/physiology , Cell Membrane/ultrastructure , Cell Wall/physiology , Cell Wall/ultrastructure , Cells, Immobilized/physiology , Cells, Immobilized/ultrastructure , Intracellular Signaling Peptides and Proteins/chemistry , Intracellular Signaling Peptides and Proteins/physiology , Membrane Glycoproteins/chemistry , Membrane Glycoproteins/physiology , Membrane Proteins/physiology , Membrane Proteins/ultrastructure , Models, Molecular , Protein Conformation , Saccharomyces cerevisiae/ultrastructure , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/physiology , Saccharomyces cerevisiae Proteins/ultrastructure , Solutions , Stress, Mechanical
14.
Chemphyschem ; 12(7): 1310-6, 2011 May 09.
Article in English | MEDLINE | ID: mdl-21488141

ABSTRACT

We investigate the interaction between D-Ala-D-Ala peptide and a stainless steel (SS) surface by AFM force spectroscopy with view to understand the role and nature of interfacial processes at the single molecule level. For this purpose, force-distance curves were recorded between the D-Ala-D-Ala modified tip and the SS surface in NaHCO(3)-enriched medium. The SS surface was prepared in a way that allows iron oxide species, presumably FeOOH, to be formed and remains stable during AFM measurements. Dynamic force measurements show that the unbinding force linearly increases with the logarithm of the loading rate, as generally observed for receptor­ligand complexes. Our results reveal also the existence of two regimes, suggesting the presence of multiple energy barriers in the energy landscape. From these dynamic force spectroscopy measurements, the kinetic off-rate constant is determined. An average unbinding force in the range of 50-300 pN is obtained, depending on the loading rate. Accordingly, in a medium in which the electrostatic interactions are not dominating, the binding mechanism of the peptide and SS surface cannot be attributed to covalent bonds and may be due to a combination of van der Waals and hydrogen bonds. Our findings open up new way to probe peptide-inorganic surface interactions and to understand the mechanism of peptide specific binding which is of particular interest in the design of hybrid materials.


Subject(s)
Dipeptides/chemistry , Hydrogen Bonding , Microscopy, Atomic Force , Photoelectron Spectroscopy , Stainless Steel/chemistry , Surface Properties
15.
Langmuir ; 27(24): 15129-34, 2011 Dec 20.
Article in English | MEDLINE | ID: mdl-22107047

ABSTRACT

In yeasts, cell surface stresses are detected by a family of plasma membrane sensors. Among these, Wsc1 contains an extracellular cysteine-rich domain (CRD), which mediates sensor clustering and is believed to anchor the sensor in the cell wall. Although the formation of Wsc1 clusters and their interaction with the intracellular pathway components are important for proper stress signaling, the molecular mechanisms underlying clustering remain poorly understood. Here, we used the combination of single-molecule atomic force microscopy (AFM) with genetic manipulations to demonstrate that Wsc1 clustering involves disulfide bridges of the CRD. Using AFM tips carrying nitrilotriacetate groups, we mapped the distribution of individual His-tagged sensors on living yeast cells. While Wsc1 formed nanoscale clusters on native cells, clustering was no longer observed after treatment with the reducing agent dithiothreitol (DTT), indicating that intra- or intermolecular disulfide bridges are required for clustering. Moreover, DTT treatment resulted in a significant increase in cell surface roughness, suggesting that disulfide bridges between other cell-wall proteins are crucial for proper cell surface topology. The remarkable sensor properties unravelled here may well apply to other sensors and receptors with cysteine-rich domains throughout biology. Our combined method of AFM with genetic manipulations offers great prospects to explore the mechanisms underlying the clustering of cell surface proteins.


Subject(s)
Cell Membrane/metabolism , Cell Wall/metabolism , Disulfides/metabolism , Membrane Proteins/metabolism , Organisms, Genetically Modified/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Cell Membrane/chemistry , Cell Membrane/drug effects , Cell Membrane/genetics , Cell Wall/chemistry , Cell Wall/drug effects , Cell Wall/genetics , Disulfides/chemistry , Dithiothreitol/metabolism , Dithiothreitol/pharmacology , Gene Expression , Membrane Proteins/chemistry , Membrane Proteins/genetics , Microscopy, Atomic Force , Organisms, Genetically Modified/genetics , Plasmids , Protein Structure, Tertiary , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/genetics , Signal Transduction , Stress, Physiological , Transduction, Genetic
16.
Phys Chem Chem Phys ; 13(21): 9995-10003, 2011 Jun 07.
Article in English | MEDLINE | ID: mdl-21350761

ABSTRACT

Mapping of the surface properties of Staphylococcus epidermidis and of biofilm forming bacteria in general is a key to understand their functions, particularly their adhesive properties. To gain a comprehensive view of the structural and chemical properties of S. epidermidis, four different strains (biofilm positive and biofilm negative strains) were analyzed using in situ atomic force microscopy (AFM). Force measurements performed using bare hydrophilic silicon nitride tips disclosed similar adhesive properties for each strain. However, use of hydrophobic tips showed that hydrophobic forces are not the driving forces for adhesion of the four strains. Rather, the observation of sawtooth force-distance patterns on the surface of biofilm positive strains documents the presence of modular proteins such as Aap that may mediate cell adhesion. Treatment of two biofilm positive strains with two chemical inhibitor compounds leads to a loss of adhesion, suggesting that AFM could be a valuable tool to screen for anti-adhesion molecules.


Subject(s)
Bacterial Adhesion , Microscopy, Atomic Force , Staphylococcus epidermidis/cytology , Hydrophobic and Hydrophilic Interactions , Microscopy, Atomic Force/methods , Staphylococcus epidermidis/chemistry
17.
Biochim Biophys Acta ; 1778(1): 276-82, 2008 Jan.
Article in English | MEDLINE | ID: mdl-17963688

ABSTRACT

Phospholipase D from Streptomyces chromofuscus (PLDSc) is a soluble enzyme known to be activated by the phosphatidic acid (PA)-calcium complexes. Despite the vast body of literature that has accumulated on this enzyme, the exact mechanism of activation remains poorly understood. In this work, we report the first observation of PLDSc activity in real time and at nanometer resolution using atomic force microscopy (AFM). AFM images of continuous and patchy dipalmitoylphosphatidylcholine (DPPC) bilayers were recorded, prior and after incubation with PLDSc. For continuous bilayers, the enzyme induced important morphological alterations; holes corresponding to the bilayer thickness were created, while an additional elevated phase, about 2.5 nm high, was observed. This bilayer blistering is believed to be due to the production of the negatively charged lipid PA that would cause localized repulsions between the bilayer and the underlying mica surface. By contrast, these elevated domains were not seen on patchy bilayers incubated with the enzyme. Instead, the shapes of DPPC patches were strongly deformed by enzyme activity and evolved into melted morphologies. These results point to the importance of lipid packing on PLD activity and illustrate the potential of AFM for visualizing remodeling enzymatic activities.


Subject(s)
Lipid Bilayers/metabolism , Microscopy, Atomic Force , Phospholipase D/metabolism , Phospholipase D/ultrastructure , Streptomyces/enzymology , 1,2-Dipalmitoylphosphatidylcholine/metabolism , Catalysis , Models, Biological
18.
Chemphyschem ; 10(9-10): 1672-5, 2009 Jul 13.
Article in English | MEDLINE | ID: mdl-19475637

ABSTRACT

Understanding the molecular interactions between bacterial adhesion proteins (adhesins) and their receptors is essential for elucidating the molecular mechanisms of bacterial pathogenesis. Here, atomic force microscopy (AFM) is used to explore the specific interactions between the heparin-binding hemagglutinin (HBHA) from Mycobacterium tuberculosis, and heparan sulphate proteoglycan (HSPG) receptors on live A549 pneumocytes. First, we show that the specific binding forces between single HBHA-HSPG pairs, 57+/-16 pN, are similar to the forces measured earlier between HBHA and heparin molecules. Second, we mapped the distribution of single HSPG receptors on the surface of A549 cells, revealing that the proteins are widely and homogeneously exposed. Third, we observed force curves with constant force plateaus at large pulling velocities, reflecting the extraction of membrane tethers or nanotubes. These single-molecule measurements provide new avenues in pathogenesis research, particularly for elucidating the molecular basis of pathogen-host interactions.


Subject(s)
Adhesins, Bacterial/chemistry , Heparan Sulfate Proteoglycans/chemistry , Mycobacterium/chemistry , Adhesins, Bacterial/metabolism , Cell Line , Heparan Sulfate Proteoglycans/metabolism , Humans , Lectins/chemistry , Lectins/metabolism , Microscopy, Atomic Force , Mycobacterium/metabolism , Protein Binding , Recombinant Proteins/metabolism
19.
PLoS One ; 14(3): e0213853, 2019.
Article in English | MEDLINE | ID: mdl-30875396

ABSTRACT

In the last 20 years, atomic force microscopy (AFM) has emerged as a ubiquitous technique in biological research, allowing the analysis of biological samples under near-physiological conditions from single molecules to living cells. Despite its growing use, the low process throughput remains a major drawback. Here, we propose a solution validated on a device allowing a fully automated, multi-sample analysis. Our approach is mainly designed to study samples in fluid and biological cells. As a proof of concept, we demonstrate its feasibility applied to detect and scan both fixed and living bacteria before completion of data processing. The effect of two distinct treatments (i.e. gentamicin and heating) is then evidenced on physical parameters of fixed Yersinia pseudotuberculosis bacteria. The multi-sample analysis presented allows an increase in the number of scanned samples while limiting the user's input. Importantly, cantilever cleaning and control steps are performed regularly-as part of the automated process-to ensure consistent scanning quality. We discuss how such an approach is paving the way to AFM developments in medical and clinical fields, in which statistical significance of results is a prerequisite.


Subject(s)
Gentamicins/pharmacology , Heating , Microscopy, Atomic Force/methods , Nanotechnology/methods , Yersinia pseudotuberculosis Infections/microbiology , Yersinia pseudotuberculosis/ultrastructure , Anti-Bacterial Agents/pharmacology , Automation , Humans , Microscopy, Atomic Force/instrumentation , Yersinia pseudotuberculosis/drug effects , Yersinia pseudotuberculosis/isolation & purification
20.
Sci Rep ; 9(1): 7733, 2019 05 22.
Article in English | MEDLINE | ID: mdl-31118478

ABSTRACT

At present, there is a lack of well-validated protocols that allow for the analysis of the mechanical properties of muscle and tendon tissues. Further, there are no reports regarding characterization of mouse skeletal muscle and tendon mechanical properties in vivo using elastography thereby limiting the ability to monitor changes in these tissues during disease progression or response to therapy. Therefore, we sought to develop novel protocols for the characterization of mechanical properties in musculotendinous tissues using atomic force microscopy (AFM) and ultrasound elastography. Given that TIEG1 knockout (KO) mice exhibit well characterized defects in the mechanical properties of skeletal muscle and tendon tissue, we have chosen to use this model system in the present study. Using TIEG1 knockout and wild-type mice, we have devised an AFM protocol that does not rely on the use of glue or chemical agents for muscle and tendon fiber immobilization during acquisition of transversal cartographies of elasticity and topography. Additionally, since AFM cannot be employed on live animals, we have also developed an ultrasound elastography protocol using a new linear transducer, SLH20-6 (resolution: 38 µm, footprint: 2.38 cm), to characterize the musculotendinous system in vivo. This protocol allows for the identification of changes in muscle and tendon elasticities. Such innovative technological approaches have no equivalent to date, promise to accelerate our understanding of musculotendinous mechanical properties and have numerous research and clinical applications.


Subject(s)
Elasticity Imaging Techniques/methods , Microscopy, Atomic Force/methods , Muscle, Skeletal/physiology , Tendons/physiology , Achilles Tendon/physiology , Achilles Tendon/ultrastructure , Animals , DNA-Binding Proteins/deficiency , Elastic Modulus , Female , Magnetic Resonance Imaging , Mice , Mice, Knockout , Microscopy, Electron , Muscle Fibers, Skeletal/physiology , Muscle Fibers, Skeletal/ultrastructure , Muscle, Skeletal/ultrastructure , Sarcomeres/physiology , Sarcomeres/ultrastructure , Tendons/ultrastructure , Transcription Factors/deficiency
SELECTION OF CITATIONS
SEARCH DETAIL