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1.
Am J Med Genet A ; : e63654, 2024 May 13.
Article in English | MEDLINE | ID: mdl-38738944

ABSTRACT

Filippi syndrome is a rare genetic disorder characterized by growth and neurodevelopmental delays, dysmorphism, and selective limb abnormalities. Although the syndrome was described approximately four decades ago, only a few families with molecularly confirmed diagnoses have been reported. In this article, we present three new patients of Filippi syndrome with unusual clinical and genetic aspects. These patients exhibited novel clinical features that have not previously been associated with Filippi syndrome, including renal hypoplasia/aplasia, renal cysts, renal cortical thinning, hypomelanotic, and hypermelanotic macules. All three patients had homozygous frameshift variants of the CKAP2L gene, specifically NM_152515.3: c.554_555del, c.981_982del, and c.1463_1467del, with the second being a novel variant. Given the limited number of reported Filippi syndrome patients to date and the ongoing discovery of new clinical aspects of the disease, exploring its potential connection with kidney and skin pigmentation abnormalities could be valuable for future research.

2.
Am J Med Genet A ; 188(6): 1792-1800, 2022 06.
Article in English | MEDLINE | ID: mdl-35238469

ABSTRACT

Somatic and germline PI3K-AKT-mTOR pathway pathogenic variants are involved in several segmental overgrowth phenotypes such as the PIK3CA-related overgrowth spectrum (PROS), Proteus syndrome, and PTEN hamartoma tumor syndrome. In this study, we describe five patients with PROS. We identified by high-throughput sequencing four different somatic PIK3CA pathogenic variants in five individuals. The Glu726Lys variant, which was previously reported in megalencephaly-capillary malformation-polymicrogyria (MCAP) syndrome, was identified in two patients with unclassified PROS. The Cys420Arg substitution, which was previously reported in CLOVES, was found in a patient with fibroadipose hyperplasia. Additionally, relatively rare pathogenic variants, His1047Tyr and Tyr1021Cys, were detected in two patients with MCAP. Therefore, we suggest performing deep sequencing of PIK3CA in all patients with suspected PROS, instead of targeted polymerase chain reaction for hotspot pathogenic variants.


Subject(s)
Abnormalities, Multiple , Class I Phosphatidylinositol 3-Kinases , Megalencephaly , Phosphatidylinositol 3-Kinases , Abnormalities, Multiple/genetics , Abnormalities, Multiple/metabolism , Class I Phosphatidylinositol 3-Kinases/genetics , Class I Phosphatidylinositol 3-Kinases/metabolism , Humans , Megalencephaly/genetics , Megalencephaly/metabolism , Mutation , Phenotype , Phosphatidylinositol 3-Kinases/genetics , Phosphatidylinositol 3-Kinases/metabolism , Skin Diseases, Vascular , Telangiectasis/congenital
3.
Am J Med Genet A ; 185(7): 2267-2270, 2021 07.
Article in English | MEDLINE | ID: mdl-33765348

ABSTRACT

3MC syndrome is a rare condition manifesting with typical facial appearance, postnatal growth deficiency, skeletal manifestations, and genitourinary tract anomalies. 3MC is caused by biallelic pathogenic variants in MASP1, COLEC11, or COLEC10. Here, we report an affected subject of Kurdish origin from Turkey presenting with facial dysmorphisms, such as, hypertelorism, blepharophimosis, blepharoptosis, highly arched eyebrows, umbilical hernia, and caudal appendage. These features were compatible with 3MC syndrome. Molecular analysis revealed a novel homozygous pathogenic variant, c.310C > T; p.Gln104Ter in the MASP1 gene, resulting in a premature stop codon. Few subjects with 3MC syndrome have been reported in the literature so far. Thus, detailed study of this subject contributes to the evolving clinical and genetic characterization of 3MC syndrome.


Subject(s)
Abnormalities, Multiple/genetics , Collectins/genetics , Craniofacial Abnormalities/genetics , Mannose-Binding Protein-Associated Serine Proteases/genetics , Muscular Atrophy/genetics , Abnormalities, Multiple/pathology , Blepharophimosis/genetics , Blepharophimosis/pathology , Blepharoptosis/genetics , Blepharoptosis/pathology , Cleft Lip/genetics , Cleft Lip/pathology , Cleft Palate/genetics , Cleft Palate/pathology , Craniofacial Abnormalities/pathology , Craniosynostoses/genetics , Craniosynostoses/pathology , Eye Abnormalities/genetics , Eye Abnormalities/pathology , Humans , Hypertelorism/genetics , Hypertelorism/pathology , Infant , Male , Muscular Atrophy/pathology , Turkey/epidemiology
4.
Fetal Pediatr Pathol ; 40(5): 486-492, 2021 Oct.
Article in English | MEDLINE | ID: mdl-31997693

ABSTRACT

BACKGROUND: The 17q22 contiguous microdeletion syndrome is a recently described chromosomal disorder. Clinical features are heterogeneous because of variable deletion sizes. Clinical report: We present a child with delayed psychomotor development, dysmorphic features (prominent posterior rotated ears, upturned nose, thin upper lip, smooth philtrum, high palate), vesicoureteral reflux and growth hormone deficiency. 1.53 Mb loss at the 17q22 chromosome region in the proband was the responsible for the phenotype. Conclusion: In the few cases of interstitial 17q22 deletion in the literature, this is the first with growth hormone deficiency. This may contribute to the phenotypic spectrum of 17q22 microdeletion syndrome. As the reported cases increase, we believe that genotype-phenotype correlation will be better illuminated.


Subject(s)
Chromosome Deletion , Chromosome Disorders , Human Growth Hormone/deficiency , Chromosome Disorders/diagnosis , Chromosome Disorders/genetics , Humans , Phenotype , Syndrome
5.
Mol Syndromol ; 14(1): 80-87, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36777703

ABSTRACT

Introduction: FBLN5-related cutis laxa is a very rare, autosomal recessive syndrome that is characterized by loose, wrinkled, and redundant skin, sagging cheeks, emphysema, aortic or pulmonary artery abnormalities, inguinal hernia, and diverticula of the gastrointestinal and urinary tract. Case Presentation: In this study, we report an 8-year-old Turkish girl with a novel homozygous missense variant in the FBLN5 gene, c.862G>T, p.(Asp288Tyr). Her unaffected parents were carriers of the same variant. The patient had loose skin, short stature, broad eyebrows, large ears, inguinal hernia, frequent respiratory tract infections, a history of peripheral pulmonary artery stenosis, and fourth finger contractures on both hands. Discussion: To our knowledge, 8 families have been reported to date, and this family is the third Turkish family with FBLN5-related cutis laxa. In addition to the classical findings of cutis laxa, the patient had fourth finger contractures on both hands. This report contributes to the ongoing clinical and genetic characterization of FBLN5-related cutis laxa.

6.
Int J Surg Pathol ; 30(3): 346-349, 2022 May.
Article in English | MEDLINE | ID: mdl-34617795

ABSTRACT

Melanomas presenting in primary or metastatic sites with a poorly differentiated histology comprise dedifferentiated (DM) and undifferentiated melanomas (UM), the latter consisting purely of undifferentiated cells and totally lacking immunophenotypic features of melanoma. These entities have a wide morphological spectrum including round cell sarcoma-like features which pose a significant diagnostic challenge. Here we present a case of UM with morphological and immunohistochemical features resembling undifferentiated round cell sarcoma, whose diagnosis could only be established after proper integration of clinical and molecular data. This diagnostically challenging case, fulfilling the previously proposed diagnostic criteria by Agaimy et al, expands the clinicopathological spectrum of DM/UM, highlights the essence of molecular signature, and further emphasizes the importance of patient's history in any morphological setting.


Subject(s)
Melanoma , Sarcoma , Soft Tissue Neoplasms , Biomarkers, Tumor , Humans , Immunophenotyping , Melanoma/diagnosis , Melanoma/genetics , Melanoma/pathology , Sarcoma/diagnosis , Soft Tissue Neoplasms/diagnosis
7.
Balkan Med J ; 39(6): 422-428, 2022 11 07.
Article in English | MEDLINE | ID: mdl-36305088

ABSTRACT

Background: RASD1 encodes Dexamethasone-induced Ras-related protein 1 (Dexras1), a protein with a critical role in signal transduction in neurons. There is a strong suspicion that dysfunction of Dexras1 might contribute to the pathogenesis of neuropsychiatric diseases. Related to its functions in intracellular signaling pathways, Dexras1 has a potential role in the etiology of schizophrenia because of its close interaction with NOS1, NOS1AP, and NMDAR, which have previously been associated with schizophrenia. Aims: To investigate the association of RASD1 variants with schizophrenia in a selected cohort from Turkey. Study Design: A case-control study. Methods: We performed targeted sequencing for the two exons, single intron, and untranslated regions of RASD1 gene in 200 individuals with schizophrenia and 100 healthy controls of Turkish origin. Results: Two rare variants, RASD1 (NM_016084.5): c.722A>T and c*31G>A were identified in individuals with schizophrenia but not in any controls. The c.722A>T was found in a single individual with schizophrenia and is a missense heterozygous variant in the second exon of RASD1, which is extremely rare in GnomAD. The other variant, c*31G>A, which was found in another individual from this schizophrenia cohort, has not been reported previously. Seven previously identified common single nucleotide polymorphisms were also detected; however, they were not significantly associated with schizophrenia in this study cohort. Conclusion: Our findings suggest that rare variants of RASD1 might be contributing to the etiopathogenesis of schizophrenia. Further studies are needed to elucidate the underlying mechanism of this association.


Subject(s)
Schizophrenia , Humans , Schizophrenia/genetics , ras Proteins/genetics , ras Proteins/metabolism , Case-Control Studies , Exons , Genetic Testing , Adaptor Proteins, Signal Transducing/genetics , Adaptor Proteins, Signal Transducing/metabolism
8.
J Clin Res Pediatr Endocrinol ; 12(3): 319-328, 2020 09 02.
Article in English | MEDLINE | ID: mdl-31782289

ABSTRACT

A novel heterozygous IVS11-2A>C(c.1957-2A>C) mutation in the GLI2 gene is reported. There was an extremely distinct phenotypical expression in two siblings and their father. The index case was a boy who developed cholestasis and hypoglycaemia in the neonatal period. He had bilateral postaxial polydactyly, mid-facial hypoplasia, high palatal arch, micropenis, and bilateral cryptorchidism. Laboratory examination revealed a diagnosis of multiple pituitary hormone deficiency. There was severe anterior pituitary hypoplasia, absent pituitary stalk and ectopic posterior pituitary on magnetic resonance imaging which suggested pituitary stalk interruption syndrome with no other midline structural abnormality. Molecular genetic analysis revealed a novel heterozygous splicing IVS11-2A>C(c.1957-2A>C) mutation detected in the GLI2 gene. His father and a six-year-old brother with the identical mutation also had unilateral postaxial polydactyly and mid-facial hypoplasia although there was no pituitary hormone deficiency. This novel heterozygous GLI2 mutation detected appears to present with an extremely variable clinical phenotype, even in related individuals with an identical mutation, suggesting incomplete penetrance of this GLI2 mutation.


Subject(s)
Abnormalities, Multiple/genetics , Hypopituitarism/genetics , Nuclear Proteins/genetics , Zinc Finger Protein Gli2/genetics , Abnormalities, Multiple/diagnosis , Adult , Brain Diseases/complications , Brain Diseases/diagnosis , Brain Diseases/genetics , Child , Choristoma/complications , Choristoma/genetics , DNA Mutational Analysis , Facial Asymmetry/complications , Facial Asymmetry/diagnosis , Facial Asymmetry/genetics , Fathers , Fingers/abnormalities , Heterozygote , Humans , Hypopituitarism/complications , Hypopituitarism/diagnosis , Infant , Male , Mutation , Pedigree , Pituitary Gland, Posterior/abnormalities , Pituitary Gland, Posterior/pathology , Polydactyly/complications , Polydactyly/diagnosis , Polydactyly/genetics , Sequence Inversion , Siblings , Toes/abnormalities
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