Isolation and characterization of denitrifiers from woodchip bioreactors for bioaugmentation application.

AIMS: This study was done to obtain denitrifiers that could be used for bioaugmentation in woodchip bioreactors to remove nitrate from agricultural subsurface drainage water. METHODS AND RESULTS: We isolated denitrifiers from four different bioreactors in Minnesota, and characterized the strains by measuring their denitrification rates and analysing their whole genomes. A total of 206 bacteria were isolated from woodchips and thick biofilms (bioslimes) that formed in the bioreactors, 76 of which were able to reduce nitrate at 15°C. Among those, nine potential denitrifying strains were identified, all of which were isolated from the woodchip samples. Although many nitrate-reducing strains were isolated from the bioslime samples, none were categorized as denitrifiers but instead as carrying out dissimilatory nitrate reduction to ammonium. CONCLUSIONS: Among the denitrifiers confirmed by 15 N stable isotope analysis and genome analysis, Cellulomonas cellasea strain WB94 and Microvirgula aerodenitrificans strain BE2.4 appear to be promising for bioreactor bioaugmentation due to their potential for both aerobic and anaerobic denitrification, and the ability of strain WB94 to degrade cellulose. SIGNIFICANCE AND IMPACT OF THE STUDY: Denitrifiers isolated in this study could be useful for bioaugmentation application to enhance nitrate removal in woodchip bioreactors.

Impact of P inputs on source-sink P dynamics of sediment along an agricultural ditch network.

Phosphorus (P) loss from intensive dairy farms is a pressure on water quality in agricultural catchments. At farm scale, P sources can enter in-field drains and open ditches, resulting in transfer along ditch networks and delivery into nearby streams. Open ditches could be a potential location for P mitigation if the right location was identified, depending on P sources entering the ditch and the source-sink dynamics at the sediment-water interface. The objective of this study was to identify the right location along a ditch to mitigate P losses on an intensive dairy farm. High spatial resolution grab samples for water quality, along with sediment and bankside samples, were collected along an open ditch network to characterise the P dynamics within the ditch. Phosphorus inputs to the ditch adversely affected water quality, and a step change in P concentrations (increase in mean dissolved reactive phosphorus (DRP) from 0.054 to 0.228 mg L-1) midway along the section of the ditch sampled, signalled the influence of a point source entering the ditch. Phosphorus inputs altered sediment P sorption properties as P accumulated along the length of the ditch. Accumulation of bankside and sediment labile extractable P, Mehlich 3 P (M3P) (from 13 to 97 mg kg-1) resulted in a decrease in P binding energies (k) to < 1 L mg-1 at downstream points and raised the equilibrium P concentrations (EPC0) from 0.07 to 4.61 mg L-1 along the ditch. The increase in EPC0 was in line with increasing dissolved and total P in water, demonstrating the role of sediment downstream in this ditch as a secondary source of P to water. Implementation of intervention measures are needed to both mitigate P loss and remediate sediment to restore the sink properties. In-ditch measures need to account for a physicochemical lag time before improvements in water quality will be observed.

Short communication: Identifying challenges and opportunities for improved nutrient management through the USDA's Dairy Agroecosystem Working Group.

Nutrient management on US dairy farms must balance an array of priorities, some of which conflict. To illustrate nutrient management challenges and opportunities across the US dairy industry, the USDA Agricultural Research Service Dairy Agroecosystems Working Group (DAWG) modeled 8 confinement and 2 grazing operations in the 7 largest US dairy-producing states using the Integrated Farm System Model (IFSM). Opportunities existed across all of the dairies studied to increase on-farm feed production and lower purchased feed bills, most notably on large dairies (>1,000 cows) with the highest herd densities. Purchased feed accounted for 18 to 44% of large dairies' total operating costs compared with 7 to 14% on small dairies (<300 milk cows) due to lower stocking rates. For dairies with larger land bases, in addition to a reduction in environmental impact, financial incentives exist to promote prudent nutrient management practices by substituting manure nutrients or legume nutrients for purchased fertilizers. Environmental priorities varied regionally and were principally tied to facility management for dry-lot dairies of the semi-arid western United States (ammonia-N emissions), to manure handling and application for humid midwestern and eastern US dairies (nitrate-N leaching and P runoff), and pasture management for dairies with significant grazing components (nitrous oxide emissions). Many of the nutrient management challenges identified by DAWG are beyond slight modifications in management and require coordinated solutions to ensure an environmentally and economically sustainable US dairy industry.

Effect of dietary protein concentration on ammonia and greenhouse gas emitting potential of dairy manure.

Two experiments were conducted to investigate the effect of dietary crude protein concentration on ammonia (NH(3)) and greenhouse gas (GHG; nitrous oxide, methane, and carbon dioxide) emissions from fresh dairy cow manure incubated in a controlled environment (experiment 1) and from manure-amended soil (experiment 2). Manure was prepared from feces and urine collected from lactating Holstein cows fed diets with 16.7% (DM basis; HCP) or 14.8% CP (LCP). High-CP manure had higher N content and proportion of NH(3)- and urea-N in total manure N than LCP manure (DM basis: 4.4 vs. 2.8% and 51.4 vs. 30.5%, respectively). In experiment 1, NH(3) emitting potential (EP) was greater for HCP compared with LCP manure (9.20 vs. 4.88 mg/m(2) per min, respectively). The 122-h cumulative NH(3) emission tended to be decreased 47% (P=0.09) using LCP compared with HCP manure. The EP and cumulative emissions of GHG were not different between HCP and LCP manure. In experiment 2, urine and feces from cows fed LCP or HCP diets were mixed and immediately applied to lysimeters (61×61×61 cm; Hagerstown silt loam; fine, mixed, mesic Typic Hapludalf) at 277 kg of N/ha application rate. The average NH(3) EP (1.53 vs. 1.03 mg/m(2) per min, respectively) and the area under the EP curve were greater for lysimeters amended with HCP than with LCP manure. The largest difference in the NH(3) EP occurred approximately 24 h after manure application (approximately 3.5 times greater for HCP than LCP manure). The 100-h cumulative NH(3) emission was 98% greater for HCP compared with LCP manure (7,415 vs. 3,745 mg/m(2), respectively). The EP of methane was increased and that of carbon dioxide tended to be increased by LCP compared with HCP manure. The cumulative methane emission was not different between treatments, whereas the cumulative carbon dioxide emission was increased with manure from the LCP diet. Nitrous oxide emissions were low in this experiment and did not differ between treatments. In the conditions of these experiments, fresh manure from dairy cows fed a LCP diet had substantially lower NH(3) EP, compared with manure from cows fed a HCP diet. The LCP manure increased soil methane EP due to a larger mass of manure added to meet plant N requirements compared with HCP manure. These results represent effects of dietary protein on NH(3) and GHG EP of manure in controlled laboratory conditions and do not account for environmental factors affecting gaseous emissions from manure on the farm.

Subsurface application of poultry litter in pasture and no-till soils.

Poultry litter provides a rich nutrient source for crops, but the usual practice of surface-applying litter can degrade water quality by allowing nutrients to be transported from fields in surface runoff while much of the ammonia (NH3)-N escapes into the atmosphere. Our goal was to improve on conventional titter application methods to decrease associated nutrient losses to air and water while increasing soil productivity. We developed and tested a knifing technique to directly apply dry poultry litter beneath the surface of pastures. Results showed that subsurface litter application decreased NH3-N volatilization and nutrient losses in runoff more than 90% (compared with surface-applied litter) to levels statistically as low as those from control (no litter) plots. Given this success, two advanced tractor-drawn prototypes were developed to subsurface apply poultry litter in field research. The two prototypes have been tested in pasture and no-till experiments and are both effective in improving nutrient-use efficiency compared with surface-applied litter, increasing crop yields (possibly by retaining more nitrogen in the soil), and decreasing nutrient losses, often to near background (control plot) levels. A paired-watershed study showed that cumulative phosphorus losses in runoff from continuously grazed perennial pastures were decreased by 55% over a 3-yr period if the annual poultry litter applications were subsurface applied rather than surface broadcast. Results highlight opportunities and challenges for commercial adoption of subsurface poultry litter application in pasture and no-till systems.

N loss to drain flow and N2O emissions from a corn-soybean rotation with winter rye.

Anthropogenic perturbation of the global nitrogen cycle and its effects on the environment such as hypoxia in coastal regions and increased N2O emissions is of increasing, multi-disciplinary, worldwide concern, and agricultural production is a major contributor. Only limited studies, however, have simultaneously investigated NO3- losses to subsurface drain flow and N2O emissions under corn-soybean production. We used the Root Zone Water Quality Model (RZWQM) to evaluate NO3- losses to drain flow and N2O emissions in a corn-soybean system with a winter rye cover crop (CC) in central Iowa over a nine year period. The observed and simulated average drain flow N concentration reductions from CC were 60% and 54% compared to the no cover crop system (NCC). Average annual April through October cumulative observed and simulated N2O emissions (2004-2010) were 6.7 and 6.0kgN2O-Nha-1yr-1 for NCC, and 6.2 and 7.2kgNha-1 for CC. In contrast to previous research, monthly N2O emissions were generally greatest when N loss to leaching were greatest, mostly because relatively high rainfall occurred during the months fertilizer was applied. N2O emission factors of 0.032 and 0.041 were estimated for NCC and CC using the tested model, which are similar to field results in the region. A local sensitivity analysis suggests that lower soil field capacity affects RZWQM simulations, which includes increased drain flow nitrate concentrations, increased N mineralization, and reduced soil water content. The results suggest that 1) RZWQM is a promising tool to estimate N2O emissions from subsurface drained corn-soybean rotations and to estimate the relative effects of a winter rye cover crop over a nine year period on nitrate loss to drain flow and 2) soil field capacity is an important parameter to model N mineralization and N loss to drain flow.