Search details
1.
Challenges and best practices in omics benchmarking.
Nat Rev Genet
; 25(5): 326-339, 2024 May.
Article
in English
| MEDLINE | ID: mdl-38216661
2.
BEERS2: RNA-Seq simulation through high fidelity in silico modeling.
Brief Bioinform
; 25(3)2024 Mar 27.
Article
in English
| MEDLINE | ID: mdl-38605641
3.
Differential Impact In Vivo of Pf4-ΔCre-Mediated and Gp1ba-ΔCre-Mediated Depletion of Cyclooxygenase-1 in Platelets in Mice.
Arterioscler Thromb Vasc Biol
; 44(6): 1393-1406, 2024 Jun.
Article
in English
| MEDLINE | ID: mdl-38660804
4.
Modulation of the Immune Response to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination by Nonsteroidal Anti-Inflammatory Drugs.
J Pharmacol Exp Ther
; 386(2): 198-204, 2023 08.
Article
in English
| MEDLINE | ID: mdl-37105582
5.
Comparative evaluation of full-length isoform quantification from RNA-Seq.
BMC Bioinformatics
; 22(1): 266, 2021 May 25.
Article
in English
| MEDLINE | ID: mdl-34034652
6.
CAMPAREE: a robust and configurable RNA expression simulator.
BMC Genomics
; 22(1): 692, 2021 Sep 25.
Article
in English
| MEDLINE | ID: mdl-34563123
7.
A specific sequence in the genome of respiratory syncytial virus regulates the generation of copy-back defective viral genomes.
PLoS Pathog
; 15(4): e1007707, 2019 04.
Article
in English
| MEDLINE | ID: mdl-30995283
8.
Correction: A specific sequence in the genome of respiratory syncytial virus regulates the generation of copy-back defective viral genomes.
PLoS Pathog
; 15(10): e1008099, 2019 Oct.
Article
in English
| MEDLINE | ID: mdl-31581268
9.
RNA-seq analysis of galaninergic neurons from ventrolateral preoptic nucleus identifies expression changes between sleep and wake.
BMC Genomics
; 21(1): 633, 2020 Sep 14.
Article
in English
| MEDLINE | ID: mdl-32928100
10.
Simulation-based comprehensive benchmarking of RNA-seq aligners.
Nat Methods
; 14(2): 135-139, 2017 02.
Article
in English
| MEDLINE | ID: mdl-27941783
11.
Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates.
Bioinformatics
; 34(9): 1488-1497, 2018 05 01.
Article
in English
| MEDLINE | ID: mdl-29236961
12.
Lipocalin-Like Prostaglandin D Synthase but Not Hemopoietic Prostaglandin D Synthase Deletion Causes Hypertension and Accelerates Thrombogenesis in Mice.
J Pharmacol Exp Ther
; 367(3): 425-432, 2018 12.
Article
in English
| MEDLINE | ID: mdl-30305427
13.
Histone posttranslational modifications predict specific alternative exon subtypes in mammalian brain.
PLoS Comput Biol
; 13(6): e1005602, 2017 Jun.
Article
in English
| MEDLINE | ID: mdl-28609483
14.
Propagation of adipogenic signals through an epigenomic transition state.
Genes Dev
; 24(10): 1035-44, 2010 May 15.
Article
in English
| MEDLINE | ID: mdl-20478996
15.
A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression.
BMC Genomics
; 18(1): 602, 2017 08 10.
Article
in English
| MEDLINE | ID: mdl-28797240
16.
Myeloid cell microsomal prostaglandin E synthase-1 fosters atherogenesis in mice.
Proc Natl Acad Sci U S A
; 111(18): 6828-33, 2014 May 06.
Article
in English
| MEDLINE | ID: mdl-24753592
17.
Systematic evaluation of spliced alignment programs for RNA-seq data.
Nat Methods
; 10(12): 1185-91, 2013 Dec.
Article
in English
| MEDLINE | ID: mdl-24185836
18.
Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data.
Bioinformatics
; 31(24): 3938-45, 2015 Dec 15.
Article
in English
| MEDLINE | ID: mdl-26338770
19.
Deep sequencing the circadian and diurnal transcriptome of Drosophila brain.
Genome Res
; 22(7): 1266-81, 2012 Jul.
Article
in English
| MEDLINE | ID: mdl-22472103
20.
Myeloid Cell COX-2 deletion reduces mammary tumor growth through enhanced cytotoxic T-lymphocyte function.
Carcinogenesis
; 35(8): 1788-97, 2014 Aug.
Article
in English
| MEDLINE | ID: mdl-24590894