Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 39
Filter
Add more filters

Country/Region as subject
Publication year range
1.
Clin Genet ; 104(1): 121-126, 2023 07.
Article in English | MEDLINE | ID: mdl-36896672

ABSTRACT

PKDCC encodes a component of Hedgehog signalling required for normal chondrogenesis and skeletal development. Although biallelic PKDCC variants have been implicated in rhizomelic shortening of limbs with variable dysmorphic features, this association was based on just two patients. In this study, data from the 100 000 Genomes Project was used in conjunction with exome sequencing and panel-testing results accessed via international collaboration to assemble a cohort of eight individuals from seven independent families with biallelic PKDCC variants. The allelic series included six frameshifts, a previously described splice-donor site variant and a likely pathogenic missense variant observed in two families that was supported by in silico structural modelling. Database queries suggested that the prevalence of this condition is between 1 of 127 and 1 of 721 in clinical cohorts with skeletal dysplasia of unknown aetiology. Clinical assessments, combined with data from previously published cases, indicate a predominantly upper limb involvement. Micrognathia, hypertelorism and hearing loss appear to be commonly co-occurring features. In conclusion, this study strengthens the link between biallelic inactivation of PKDCC and rhizomelic limb-shortening and will enable clinical testing laboratories to better interpret variants in this gene.


Subject(s)
Dwarfism , Osteochondrodysplasias , Humans , Hedgehog Proteins , Osteochondrodysplasias/pathology , Prevalence , RNA Splice Sites
2.
Am J Hum Genet ; 105(6): 1126-1147, 2019 12 05.
Article in English | MEDLINE | ID: mdl-31735293

ABSTRACT

The redox state of the neural progenitors regulates physiological processes such as neuronal differentiation and dendritic and axonal growth. The relevance of endoplasmic reticulum (ER)-associated oxidoreductases in these processes is largely unexplored. We describe a severe neurological disorder caused by bi-allelic loss-of-function variants in thioredoxin (TRX)-related transmembrane-2 (TMX2); these variants were detected by exome sequencing in 14 affected individuals from ten unrelated families presenting with congenital microcephaly, cortical polymicrogyria, and other migration disorders. TMX2 encodes one of the five TMX proteins of the protein disulfide isomerase family, hitherto not linked to human developmental brain disease. Our mechanistic studies on protein function show that TMX2 localizes to the ER mitochondria-associated membranes (MAMs), is involved in posttranslational modification and protein folding, and undergoes physical interaction with the MAM-associated and ER folding chaperone calnexin and ER calcium pump SERCA2. These interactions are functionally relevant because TMX2-deficient fibroblasts show decreased mitochondrial respiratory reserve capacity and compensatory increased glycolytic activity. Intriguingly, under basal conditions TMX2 occurs in both reduced and oxidized monomeric form, while it forms a stable dimer under treatment with hydrogen peroxide, recently recognized as a signaling molecule in neural morphogenesis and axonal pathfinding. Exogenous expression of the pathogenic TMX2 variants or of variants with an in vitro mutagenized TRX domain induces a constitutive TMX2 polymerization, mimicking an increased oxidative state. Altogether these data uncover TMX2 as a sensor in the MAM-regulated redox signaling pathway and identify it as a key adaptive regulator of neuronal proliferation, migration, and organization in the developing brain.


Subject(s)
Brain Diseases/pathology , Brain/abnormalities , Developmental Disabilities/pathology , Membrane Proteins/metabolism , Mitochondria/metabolism , Thioredoxins/metabolism , Adolescent , Adult , Brain Diseases/genetics , Brain Diseases/metabolism , Child , Child, Preschool , Cohort Studies , Developmental Disabilities/genetics , Developmental Disabilities/metabolism , Female , Fibroblasts/metabolism , Fibroblasts/pathology , Follow-Up Studies , Humans , Infant , Infant, Newborn , Male , Membrane Proteins/genetics , Mitochondria/pathology , Oxidation-Reduction , Prognosis , Skin/metabolism , Skin/pathology , Thioredoxins/genetics , Transcriptome
3.
J Inherit Metab Dis ; 44(4): 987-1000, 2021 07.
Article in English | MEDLINE | ID: mdl-33583022

ABSTRACT

Congenital disorders of glycosylation (CDGs) are a continuously expanding group of monogenic disorders of glycoprotein and glycolipid biosynthesis that cause multisystem diseases. Individuals with ALG3-CDG frequently exhibit severe neurological involvement (epilepsy, microcephaly, and hypotonia), ocular anomalies, dysmorphic features, skeletal anomalies, and feeding difficulties. We present 10 unreported individuals diagnosed with ALG3-CDG based on molecular and biochemical testing with 11 novel variants in ALG3, bringing the total to 40 reported individuals. In addition to the typical multisystem disease seen in ALG3-CDG, we expand the symptomatology of ALG3-CDG to now include endocrine abnormalities, neural tube defects, mild aortic root dilatation, immunodeficiency, and renal anomalies. N-glycan analyses of these individuals showed combined deficiencies of hybrid glycans and glycan extension beyond Man5 GlcNAc2 consistent with their truncated lipid-linked precursor oligosaccharides. This spectrum of N-glycan changes is unique to ALG3-CDG. These expanded features of ALG3-CDG facilitate diagnosis and suggest that optimal management should include baseline endocrine, renal, cardiac, and immunological evaluation at the time of diagnosis and with ongoing monitoring.


Subject(s)
Congenital Disorders of Glycosylation/genetics , Mannosyltransferases/genetics , Adolescent , Adult , Child, Preschool , Congenital Disorders of Glycosylation/pathology , Congenital Disorders of Glycosylation/physiopathology , Female , Genotype , Humans , Infant , Infant, Newborn , Male , Phenotype , Young Adult
4.
Am J Med Genet B Neuropsychiatr Genet ; 183(3): 172-180, 2020 04.
Article in English | MEDLINE | ID: mdl-31854501

ABSTRACT

Hearing loss (HL) is the most common sensory disorder worldwide and genetic factors contribute to approximately half of congenital HL cases. HL is subject to extensive genetic heterogeneity, rendering molecular diagnosis difficult. Mutations of the transmembrane channel-like 1 (TMC1) gene cause hearing defects in humans and mice. The precise function of TMC1 protein in the inner ear is unknown, although it is predicted to be involved in functional maturation of cochlear hair cells. TMC1 mutations result in autosomal recessive (DFNB7/11) and sometimes dominant (DFNA36) nonsyndromic HL. Mutations in TMC1 are responsible for a significant portion of HL, particularly in consanguineous populations. To evaluate the importance of TMC1 mutations in the Saudi population, we used a combination of autozygome-guided candidate gene mutation analysis and targeted next generation sequencing in 366 families with HL previously shown to lack mutations in GJB2. We identified 12 families that carried five causative TMC1 mutations; including three novel (c.362+3A > G; c.758C > T [p.Ser253Phe]; c.1396_1398delACC [p.Asn466del]) and two reported mutations (c.100C > T [p.Arg34Ter]; c.1714G > A [p.Asp572Asn]). Each of the identified recessive mutation was classified as severe, by both age of onset and severity of HL. Similarly, consistent with the previously reported dominant variant p.Asp572Asn, the HL phenotype was progressive. Eight families in our cohort were found to share the pathogenic p.Arg34Ter mutation and linkage disequilibrium was observed between p.Arg34Ter and SNPs investigated. Our results indicate that TMC1 mutations account for about 3.3% (12/366) of Saudi HL cases and that the recurrent TMC1 mutation p.Arg34Ter is likely to be a founder mutation.


Subject(s)
Hearing Loss, Sensorineural/genetics , Membrane Proteins/genetics , Mutation , Adolescent , Adult , Age of Onset , Child , Child, Preschool , DNA Mutational Analysis , Ear, Inner/metabolism , Exons , Family Health , Female , Genetic Linkage , Genome-Wide Association Study , Genotype , Haplotypes , Humans , Linkage Disequilibrium , Male , Pedigree , Phenotype , Polymorphism, Single Nucleotide , Saudi Arabia , Young Adult
5.
BMC Med Genet ; 20(1): 119, 2019 07 04.
Article in English | MEDLINE | ID: mdl-31272422

ABSTRACT

BACKGROUND: Mutations in ARL6IP1, which encodes a tetraspan membrane protein localized to the endoplasmic reticulum (ER), have been recently described in a large family with a complicated form of hereditary spastic paraplegia (HSP). CASE PRESENTATION: We sought to expand the HSP phenotype associated with ARL6IP1 variants by examining a Saudi kindred with a clinically more severe presentation, which resulted in spontaneous neonatal death of both affected siblings. Clinical features encompassed not only spastic paraplegia but also developmental delay, microcephaly, cerebral atrophy, periventricular leukoencephalopathy, hypotonia, seizures, spasticity, jejunal stricture, gastrointestinal reflux, neuropathy, dysmorphism and respiratory distress. We performed clinical assessment and radiological studies of this family, in addition to homozygosity mapping and whole exome sequencing (WES) to identify the disease-associated variant. Homozygosity mapping localized the causative gene to a region on chromosome 16 harboring ARL6IP1. WES of the index case identified the homoallelic nonsense variant, c.112C > T in ARL6IP1 that segregated with the phenotype and was predicted to result in loss of the protein. Allelic expression analysis of the parents demonstrated downward pressure on the mutant allele, suggestive of nonsense-mediated decay. CONCLUSIONS: Our report shows that the phenotype associated with ARL6IP1 variants may be broader and more acute than so far reported and identifies fatal HSP as the severe end of the phenotypic spectrum of ARL6IP1 variants.


Subject(s)
Adaptor Proteins, Signal Transducing/genetics , Genetic Association Studies , Genetic Predisposition to Disease/genetics , Genetic Variation , Membrane Proteins/genetics , Mutation , Spastic Paraplegia, Hereditary/genetics , Alleles , Child, Preschool , Endoplasmic Reticulum/metabolism , Female , Gene Expression Regulation , Homozygote , Humans , Male , Mutation/genetics , Pedigree , Phenotype , Saudi Arabia , Spastic Paraplegia, Hereditary/diagnostic imaging , Spastic Paraplegia, Hereditary/physiopathology , Exome Sequencing
6.
Microb Pathog ; 135: 103626, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31325573

ABSTRACT

Plaque-related diseases are amongst the most common ailments of the oral cavity. Streptococcus mutans is the causal agent of dental caries in animals and humans and is responsible for the formation and accumulation of plaques. This study aimed to identify and evaluate the role of the dental plaque isolates and its surrounding environment in plaque formation or inhibition. The study started with the identification of human dental plaque isolates from high caries index patients based on 16S rRNA and Mitis salivarius bacitracin agar (MSB) was used for S. mutans growing. Unexpectedly, the Streptococcus mutans was completely absent. The disc diffusion assay recorded that all the isolates had antimicrobial activity against the S. mutans growth. Enzymes assay revealed that the isolates produced dextransucrase, levansucrase and levanase activity with wide variation degrees. Also, the lactic acid production assay was done based in pH shift assessment. The highest pH shift and dextran yield were detected by the isolates Bacillus subtilis_AG1 and Bacillus mojavensis_AG3. The adherence test revealed that Lysinibacillus cresolivorans_W2 (MK411028) recorded the highest adhesion property (60%). Oligo- and polysaccharides were synthesized by the action of dextransucrase enzyme and their cytotoxicity tests were negative. Dextran with a molecular weight (117521 Da) recorded the highest antimicrobial efficacy against Bacillus subtilis_AG1 and Bacillusmojavensis_AG3 (65%, 63.5%) respectively. The results concluded that the dextran was the most important factor causing the dental plaque pathogenicity. Also, oral oligo- and polysaccharides might play a role in dental plaque control.


Subject(s)
Bacteria/classification , Bacteria/isolation & purification , Dental Plaque/microbiology , Streptococcus mutans/isolation & purification , Animals , Anti-Bacterial Agents/pharmacology , Bacillaceae/isolation & purification , Bacillus/isolation & purification , Bacillus subtilis/isolation & purification , Bacteria/drug effects , Bacteria/genetics , Bacterial Adhesion , Cell Line , Dental Caries/microbiology , Dextrans/metabolism , Glucosyltransferases , Hexosyltransferases , Humans , Hydrogen-Ion Concentration , Lactic Acid/metabolism , Microbial Sensitivity Tests , Mouth/microbiology , Phylogeny , RNA, Ribosomal, 16S/genetics , Streptococcus mutans/drug effects
7.
Am J Hum Genet ; 97(6): 862-8, 2015 Dec 03.
Article in English | MEDLINE | ID: mdl-26608784

ABSTRACT

Primary microcephaly is a developmental brain anomaly that results from defective proliferation of neuroprogenitors in the germinal periventricular zone. More than a dozen genes are known to be mutated in autosomal-recessive primary microcephaly in isolation or in association with a more generalized growth deficiency (microcephalic primordial dwarfism), but the genetic heterogeneity is probably more extensive. In a research protocol involving autozygome mapping and exome sequencing, we recruited a multiplex consanguineous family who is affected by severe microcephalic primordial dwarfism and tested negative on clinical exome sequencing. Two candidate autozygous intervals were identified, and the second round of exome sequencing revealed a single intronic variant therein (c.2885+8A>G [p.Ser963(∗)] in RTTN exon 23). RT-PCR confirmed that this change creates a cryptic splice donor and thus causes retention of the intervening 7 bp of the intron and leads to premature truncation. On the basis of this finding, we reanalyzed the exome file of a second consanguineous family affected by a similar phenotype and identified another homozygous change in RTTN as the likely causal mutation. Combined linkage analysis of the two families confirmed that RTTN maps to the only significant linkage peak. Finally, through international collaboration, a Canadian multiplex family affected by microcephalic primordial dwarfism and biallelic mutation of RTTN was identified. Our results expand the phenotype of RTTN-related disorders, hitherto limited to polymicrogyria, to include microcephalic primordial dwarfism with a complex brain phenotype involving simplified gyration.


Subject(s)
Carrier Proteins/genetics , Dwarfism/genetics , Mutation , Amino Acid Sequence , Animals , Brain/abnormalities , Brain/metabolism , Cell Cycle Proteins , Child , Child, Preschool , Consanguinity , Dwarfism/pathology , Exome , Exons , Gene Expression , Homozygote , Humans , Introns , Male , Microcephaly/genetics , Microcephaly/pathology , Molecular Sequence Data , Pedigree , Sequence Alignment
8.
N Engl J Med ; 382(12): 1166-1174, 2020 03 19.
Article in English | MEDLINE | ID: mdl-32187475
9.
Neurosciences (Riyadh) ; 23(2): 162-164, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29664460

ABSTRACT

Ataxia-Telangiectasia (A-T) is an autosomal recessive disorder caused by variants in ATM gene and characterized by progressive neurologic impairment, cerebellar ataxia, and oculo-cutaneous telangiectasia. Immunodeficiency with a recurrent sinopulmonary infections are observed in patients with A-T. Here, we report a novel stop codon variant, c.5944 C>T (p.Gln1982*), revealed by whole-exome sequencing in a 9-year old boy. He presented with recurrent upper respiratory tract infections, failure to thrive, developmental delay, ataxic gait, and bulbar telangiectasia.


Subject(s)
Ataxia Telangiectasia Mutated Proteins/genetics , Ataxia Telangiectasia/genetics , Codon, Nonsense , Adult , Ataxia Telangiectasia/pathology , Humans , Male , Exome Sequencing
10.
Hum Mol Genet ; 24(5): 1410-9, 2015 Mar 01.
Article in English | MEDLINE | ID: mdl-25361962

ABSTRACT

Jeune asphyxiating thoracic dystrophy (JATD) is a skeletal dysplasia characterized by a small thoracic cage and a range of skeletal and extra-skeletal anomalies. JATD is genetically heterogeneous with at least nine genes identified, all encoding ciliary proteins, hence the classification of JATD as a skeletal ciliopathy. Consistent with the observation that the heterogeneous molecular basis of JATD has not been fully determined yet, we have identified two consanguineous Saudi families segregating JATD who share a single identical ancestral homozygous haplotype among the affected members. Whole-exome sequencing revealed a single novel variant within the disease haplotype in CEP120, which encodes a core centriolar protein. Subsequent targeted sequencing of CEP120 in Saudi and European JATD cohorts identified two additional families with the same missense mutation. Combining the four families in linkage analysis confirmed a significant genome-wide linkage signal at the CEP120 locus. This missense change alters a highly conserved amino acid within CEP120 (p.Ala199Pro). In addition, we show marked reduction of cilia and abnormal number of centrioles in fibroblasts from one affected individual. Inhibition of the CEP120 ortholog in zebrafish produced pleiotropic phenotypes characteristic of cilia defects including abnormal body curvature, hydrocephalus, otolith defects and abnormal renal, head and craniofacial development. We also demonstrate that in CEP120 morphants, cilia are shortened in the neural tube and disorganized in the pronephros. These results are consistent with aberrant CEP120 being implicated in the pathogenesis of JATD and expand the role of centriolar proteins in skeletal ciliopathies.


Subject(s)
Bone and Bones/abnormalities , Cell Cycle Proteins/genetics , Centrioles/genetics , Ellis-Van Creveld Syndrome/genetics , Mutation, Missense , Amino Acid Sequence , Animals , Bone and Bones/metabolism , Cell Cycle Proteins/metabolism , Centrioles/metabolism , Chromosome Mapping , Chromosomes, Human, Pair 5/genetics , Chromosomes, Human, Pair 5/metabolism , Cilia/pathology , Cohort Studies , Disease Models, Animal , Europe , Female , Fibroblasts/cytology , Fibroblasts/metabolism , Genetic Loci , Genome-Wide Association Study , Humans , Infant , Magnetic Resonance Imaging , Male , Molecular Sequence Data , Pedigree , Phenotype , Saudi Arabia , Zebrafish
11.
Hum Genet ; 135(11): 1233-1239, 2016 Nov.
Article in English | MEDLINE | ID: mdl-27417436

ABSTRACT

Laterality defects are heterogeneous groups of congenital malformations that arise from perturbed asymmetrical development of visceral organs. The central role of the motile cilia-generated nodal flow in breaking early embryonic symmetry is reflected in the large contribution of ciliary genes to the etiology of these disorders. In a consanguineous multiplex family with a laterality defect that resembles situs inversus totalis, and complex congenital heart disease, we combined autozygome and exome analysis to identify a novel homozygous variant in ANKS3. ANKS3 encodes a recently described ciliary protein with known interaction with other ciliary proteins, and deficiency of its zebrafish ortholog causes laterality defects. Consistent with the proposed role of the ANKS3 variant in the pathogenesis of the reported family's phenotype, we show that the mutant RNA failed to rescue the laterality defect in anks3 morphants compared to wild-type RNA. Furthermore, we describe a new mutant anks3 line that also displays laterality defect in the homozygous state. Our study suggests a role for ANKS3 in right-left axis determination in humans.


Subject(s)
Carrier Proteins/genetics , Cilia/genetics , Heart Diseases/genetics , Heterotaxy Syndrome/genetics , Zebrafish/growth & development , Animals , Body Patterning/genetics , Cilia/pathology , Embryonic Development/genetics , Exome/genetics , Heart Diseases/pathology , Heterotaxy Syndrome/pathology , Humans , Mutation , Zebrafish/genetics
12.
Hum Genet ; 135(10): 1191-7, 2016 10.
Article in English | MEDLINE | ID: mdl-27503289

ABSTRACT

Primary microcephaly is a clinical phenotype in which the head circumference is significantly reduced at birth due to abnormal brain development, primarily at the cortical level. Despite the marked genetic heterogeneity, most primary microcephaly-linked genes converge on mitosis regulation. Two consanguineous families segregating the phenotype of severe primary microcephaly, spasticity and failure to thrive had overlapping autozygomes in which exome sequencing identified homozygous splicing variants in CIT that segregate with the phenotype within each family. CIT encodes citron, an effector of the Rho signaling that is required for cytokinesis specifically in proliferating neuroprogenitors, as well as for postnatal brain development. In agreement with the critical role assigned to the kinase domain in effecting these biological roles, we show that both splicing variants predict variable disruption of this domain. The striking phenotypic overlap between CIT-mutated individuals and the knockout mice and rats that are specifically deficient in the kinase domain supports the proposed causal link between CIT mutation and primary microcephaly in humans.


Subject(s)
Genetic Predisposition to Disease , Intracellular Signaling Peptides and Proteins/genetics , Microcephaly/genetics , Protein Serine-Threonine Kinases/genetics , Animals , Brain/growth & development , Brain/pathology , Child , Cytokinesis/genetics , Female , Genetic Heterogeneity , Humans , Infant, Newborn , Mice , Mice, Knockout , Microcephaly/pathology , Mitosis/genetics , Mutation , Rats , Saudi Arabia , Signal Transduction
13.
Am J Hum Genet ; 93(6): 1108-17, 2013 Dec 05.
Article in English | MEDLINE | ID: mdl-24268659

ABSTRACT

Nemaline myopathy (NM) is a rare congenital muscle disorder primarily affecting skeletal muscles that results in neonatal death in severe cases as a result of associated respiratory insufficiency. NM is thought to be a disease of sarcomeric thin filaments as six of eight known genes whose mutation can cause NM encode components of that structure, however, recent discoveries of mutations in non-thin filament genes has called this model in question. We performed whole-exome sequencing and have identified recessive small deletions and missense changes in the Kelch-like family member 41 gene (KLHL41) in four individuals from unrelated NM families. Sanger sequencing of 116 unrelated individuals with NM identified compound heterozygous changes in KLHL41 in a fifth family. Mutations in KLHL41 showed a clear phenotype-genotype correlation: Frameshift mutations resulted in severe phenotypes with neonatal death, whereas missense changes resulted in impaired motor function with survival into late childhood and/or early adulthood. Functional studies in zebrafish showed that loss of Klhl41 results in highly diminished motor function and myofibrillar disorganization, with nemaline body formation, the pathological hallmark of NM. These studies expand the genetic heterogeneity of NM and implicate a critical role of BTB-Kelch family members in maintenance of sarcomeric integrity in NM.


Subject(s)
Mutation , Myofibrils/metabolism , Myopathies, Nemaline/genetics , Myopathies, Nemaline/metabolism , Protein Interaction Domains and Motifs , Proteins/genetics , Signal Transduction , Ubiquitination , Adolescent , Animals , Child , Child, Preschool , Cytoskeletal Proteins , Fatal Outcome , Female , Gene Expression , Gene Order , Genetic Association Studies , Humans , Infant , Infant, Newborn , Male , Models, Molecular , Muscle, Skeletal/metabolism , Muscle, Skeletal/pathology , Muscle, Skeletal/ultrastructure , Myopathies, Nemaline/diagnosis , Protein Conformation , Proteins/chemistry , Zebrafish
14.
Am J Med Genet A ; 170A(5): 1142-7, 2016 May.
Article in English | MEDLINE | ID: mdl-26842963

ABSTRACT

ADAT3-related intellectual disability has been recently described in 24 individuals from eight Saudi families who had cognitive impairment and strabismus. Other common features included growth failure, microcephaly, tone abnormalities, epilepsy, and nonspecific brain abnormalities. A single homozygous founder mutation (c.382G>A:p.(V128M)) in the ADAT3 gene, which encodes a protein that functions in tRNA editing, was identified in all affected individuals. In this report, we present additional 15 individuals from 11 families (10 Saudis and 1 Emirati) who are homozygous for the same founder mutation. In addition to the universal findings of intellectual disability and strabismus, the majority exhibited microcephaly and growth failure. Additional features not reported in the original cohort include dysmorphic facial features (prominent forehead, up-slanted palpebral fissures, epicanthus, and depressed nasal bridge), behavioral problems (hyperactivity and aggressiveness), recurrent otitis media, and growth hormone deficiency. ADAT3-related intellectual disability is an important recognizable cause of intellectual disability in Arabia.


Subject(s)
Adenosine Deaminase/genetics , Cognitive Dysfunction/genetics , Intellectual Disability/genetics , Strabismus/genetics , Adolescent , Adult , Child , Child, Preschool , Cognitive Dysfunction/complications , Cognitive Dysfunction/physiopathology , Female , Founder Effect , Growth Hormone/genetics , Humans , Infant , Intellectual Disability/complications , Intellectual Disability/physiopathology , Male , Phenotype , Strabismus/complications , Strabismus/physiopathology
15.
J Med Genet ; 52(5): 322-9, 2015 May.
Article in English | MEDLINE | ID: mdl-25713110

ABSTRACT

BACKGROUND: Truncus arteriosus (TA) is characterised by failure of septation of the outflow tract into aortic and pulmonary trunks and is associated with high morbidity and mortality. Although ranked among the least common congenital heart defects, TA provides an excellent model for the role of individual genes in cardiac morphogenesis as exemplified by TBX1 deficiency caused by point mutations or, more commonly, hemizygosity as part of the 22q11.2 deletion syndrome. The latter genetic lesion, however, is only observed in a proportion of patients with TA, which suggests the presence of additional disease genes. OBJECTIVE: To identify novel genes that cause Mendelian forms of TA. METHODS AND RESULTS: We exploited the occurrence of monogenic forms of TA in the Saudi population, which is characterised by high consanguinity, a feature conducive to the occurrence of Mendelian phenocopies of complex phenotypes as we and others have shown. Indeed, we demonstrate in two multiplex consanguineous families that we are able to map TA to regions of autozygosity in which whole-exome sequencing revealed homozygous truncating mutations in PRKD1 (encoding a kinase derepressor of MAF2) and NRP1 (encoding a coreceptor of vascular endothelial growth factor (VEGFA)). Previous work has demonstrated that Prkd1(-/-) is embryonic lethal and that its tissue-specific deletion results in abnormal heart remodelling, whereas Nrp1(-/-) develops TA. Surprisingly, molecular karyotyping to exclude 22q11.2 deletion syndrome in the replication cohort of 17 simplex TA cases revealed a de novo hemizygous deletion that encompasses PRDM1, deficiency of which also results in TA phenotype in mouse. CONCLUSIONS: Our results expand the repertoire of molecular lesions in chromatin remodelling and transcription factors that are implicated in the pathogenesis of congenital heart disease in humans and attest to the power of monogenic forms of congenital heart diseases as a complementary approach to dissect the genetics of these complex phenotypes.


Subject(s)
Chromosome Mapping , Genetic Association Studies , Neuropilin-1/genetics , Protein Kinase C/genetics , Repressor Proteins/genetics , Truncus Arteriosus, Persistent/genetics , Child , Consanguinity , Echocardiography , Exome , Fatal Outcome , Female , Genes, Recessive , Genetic Loci , Genome-Wide Association Study , Genotype , High-Throughput Nucleotide Sequencing , Humans , Infant , Infant, Newborn , Male , Mutation , Pedigree , Polymorphism, Single Nucleotide , Positive Regulatory Domain I-Binding Factor 1 , Truncus Arteriosus, Persistent/diagnosis
16.
Appl Environ Microbiol ; 81(24): 8402-13, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26431970

ABSTRACT

Bacteria in the genus Streptomyces and its close relatives are prolific producers of secondary metabolites with antibiotic activity. Genome sequencing of these bacteria has revealed a rich source of potentially new antibiotic pathways, whose products have never been observed. Moreover, these new pathways can provide novel genes that could be used in combinatorial biosynthesis approaches to generate unnatural analogues of existing antibiotics. We explore here the use of multiple orthologous integrating plasmid systems, based on the int/attP loci from phages TG1, SV1, and ϕBT1, to express the polyketide synthase (PKS) for erythromycin in a heterologous Streptomyces host. Streptomyces strains containing the three polyketide synthase genes eryAI, eryAII, and eryAIII expressed from three different integrated plasmids produced the aglycone intermediate, 6-deoxyerythronolide B (6-dEB). A further pair of integrating plasmids, both derived from the ϕC31 int/attP locus, were constructed carrying a gene cassette for glycosylation of the aglycone intermediates, with or without the tailoring gene, eryF, required for the synthesis of erythronolide B (EB). Liquid chromatography-mass spectrometry of the metabolites indicated the production of angolosaminyl-6-dEB and angolosaminyl-EB. The advantages of using multiplexed integrating plasmids for engineering expression and for combinatorial biosynthesis were demonstrated.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Bacterial Proteins/genetics , Erythromycin/metabolism , Plasmids/genetics , Streptomyces/metabolism , Bacterial Proteins/biosynthesis , Chromatography, Liquid , Erythromycin/analogs & derivatives , Erythromycin/biosynthesis , Genetic Engineering , Glycosylation , Mass Spectrometry , Multienzyme Complexes/metabolism , Multigene Family/genetics , Streptomyces/genetics
17.
J Med Genet ; 50(7): 425-30, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23620220

ABSTRACT

BACKGROUND: Intellectual disability (ID) is one of the most common forms of disability worldwide, displaying a wide range of aetiologies and affecting nearly 2% of the global population. OBJECTIVE: To describe a novel autosomal recessive form of ID with strabismus and its underlying aetiology. MATERIALS AND METHODS: Autozygosity mapping, linkage analysis and exome sequencing were performed in a large multiplex consanguineous family that segregates ID and strabismus. Exome sequencing was independently performed in three other consanguineous families segregating the same disease. Direct sequencing of the resulting candidate gene was performed in four additional families with the same phenotype. RESULTS: A single missense mutation was identified in ADAT3 in all studied families on an ancient ancestral haplotype. This gene encodes one of two eukaryotic proteins that are necessary for the deamination of adenosine at position 34 to inosine in t-RNA. Our results show the first human mutation in the t-RNA editing machinery and expand the landscape of pathways involved in the pathogenesis of ID.


Subject(s)
Adenosine Deaminase/genetics , Intellectual Disability/genetics , RNA, Transfer/genetics , Strabismus/genetics , Amino Acid Sequence , Base Sequence , Cohort Studies , Consanguinity , Exome/genetics , Female , Genes, Recessive , Genetic Linkage , Haplotypes , Homozygote , Humans , Male , Molecular Sequence Data , Mutation , Pedigree , RNA, Transfer/metabolism
18.
Article in English | MEDLINE | ID: mdl-39147584

ABSTRACT

BACKGROUND AND PURPOSE: Sotos syndrome is a rare autosomal dominant condition caused by pathogenic mutations in the NSD1 gene that presents with craniofacial dysmorphism, overgrowth, seizures, and neurodevelopmental delay. Macrocephaly, ventriculomegaly, and corpus callosal dysmorphism are typical neuroimaging features that have been described in the medical literature. The purpose of this study was to expand on the neuroimaging phenotype by detailed analysis of a large cohort of patients with genetically proved Sotos syndrome. MATERIALS AND METHODS: This multicenter, multinational, retrospective observational cohort study systematically analyzed the clinical characteristics and neuroimaging features of 77 individuals with genetically diagnosed Sotos syndrome, via central consensus review with 3 pediatric neuroradiologists. RESULTS: In addition to previously described features, malformations of cortical development were identified in most patients (95.0%), typically dysgyria (92.2%) and polymicrogyria (22.1%), varying in location and distribution. Incomplete rotation of the hippocampus was observed in 50.6% of patients and was associated with other imaging findings, in particular with dysgyria (100% versus 84.2%, P = .012). CONCLUSIONS: Our findings show a link between the genetic-biochemical basis and the neuroimaging features and aid in better understanding the underlying clinical manifestations and possible treatment options. These findings have yet to be described to this extent and correspond with recent studies that show that NSD1 participates in brain development and has interactions with other known relevant genetic pathways.

19.
Int J Biol Macromol ; 250: 126278, 2023 Oct 01.
Article in English | MEDLINE | ID: mdl-37572818

ABSTRACT

This study aimed to investigate whether the gastroprotective effects of three types of bacterial levans are correlated with their prebiotic-associated anti-inflammatory/antioxidant potentials. Three levans designated as LevAE, LevP, and LevZ were prepared from bacterial honey isolates; purified, and characterized using TLC, NMR, and FTIR. The anti-inflammatory properties of levan preparations were assessed in LPS-stimulated RAW 264.7 cell lines, while their safety and gastroprotective potentials were assessed in Wistar rats. The three levans significantly reduced ulcer number (22.29-70.05 %) and severity (31.76-80.54 %) in the ethanol-induced gastric ulcer model compared to the control (P < 0.0001/each), with the highest effect observed in LevAE and levZ (200 mg/each) (P < 0.0001). LevZ produced the highest levels of glutathione; catalase activity, and the lowest MDA levels (P = 0.0001/each). The highest anti-inflammatory activity was observed in LevAE and levZ in terms of higher inhibitory effect on IL-1ß and TNF-α production (P < 0.0001 each); COX2, PGE2, and NF-κB gene expression. The three levan preparations also proved safe with no signs of toxicity, with anti-lipidemic properties as well as promising prebiotic activity that directly correlated with their antiulcer effect. This novel study highlights the implication of prebiotic-mediated systemic immunomodulation exhibited by bacterial levans that directly correlated with their gastroprotective activity.

20.
Eur J Pediatr ; 169(8): 1029-32, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20039062

ABSTRACT

Although rare, Munchausen syndrome by proxy (MBP) is a potentially life-threatening form of child abuse. Here, we report a 19-month-old female infant who presented with hepatosplenomegaly, anemia, thrombocytopenia, and recurrent septicemia. She was initially thought to have myelodysplastic syndrome. Further hematological and immunological investigations revealed no cause. beta-Glucosylceramidase enzyme activity on dried blood spot was suggestive of Gaucher disease. However, the enzyme level on cultured skin fibroblast was not consistent with Gaucher disease. The first hint about MBP was the recurrent sepsis with numerous gram negative rods. Furthermore, the mother's behavior and health history raised our suspicion about MBP. The child showed significant improvement after she was separated from the mother for a week. Finally, the mother confessed that she was spitting in local herbs and injecting it into the central line. This is, to our knowledge, the first report of MBP resembling in its presentation Gaucher disease. This case should alert the general and specialized pediatricians about MBP, as it may mimic metabolic diseases like Gaucher disease.


Subject(s)
Gaucher Disease/diagnosis , Glucosylceramidase/blood , Mothers/psychology , Munchausen Syndrome by Proxy/complications , Munchausen Syndrome by Proxy/diagnosis , Anemia/etiology , Diagnosis, Differential , Female , Gaucher Disease/enzymology , Glucosylceramidase/biosynthesis , Hepatomegaly/etiology , Humans , Infant , Mother-Child Relations , Munchausen Syndrome by Proxy/blood , Munchausen Syndrome by Proxy/psychology , Myelodysplastic Syndromes/diagnosis , Sepsis/etiology , Sick Role , Splenomegaly/etiology , Thrombocytopenia/etiology
SELECTION OF CITATIONS
SEARCH DETAIL