Trends in seabird breeding populations across the Great Barrier Reef.

The Great Barrier Reef is an iconic ecosystem, known globally for its rich marine biodiversity that includes many thousands of tropical breeding seabirds. Despite indications of localized declines in some seabird species from as early as the mid-1990s, trends in seabird populations across the reef have never been quantified. With a long history of human impact and ongoing environmental change, seabirds are likely sentinels in this important ecosystem. Using 4 decades of monitoring data, we estimated site-specific trends for 9 seabird species from 32 islands and cays across the reef. Trends varied markedly among species and sites, but probable declines occurred at 45% of the 86 species-by-site combinations analyzed compared with increases at 14%. For 5 species, we combined site-specific trends into a multisite trend in scaled abundance, which revealed probable declines of Common Noddy (Anous stolidus), Sooty Tern (Onychoprion fuscatus), and Masked Booby (Sula dactylatra), but no long-term changes in the 2 most widely distributed species, Greater Crested Tern (Thalasseus bergii) and Brown Booby (Sula leucogaster). For Brown Booby, long-term stability largely resulted from increases at a single large colony on East Fairfax Island that offset declines at most other sites. Although growth of the Brown Booby population on East Fairfax points to the likely success of habitat restoration on the island, it also highlights a general vulnerability wherein large numbers of some species are concentrated at a small number of key sites. Identifying drivers of variation in population change across species and sites while ensuring long-term protection of key sites will be essential to securing the future of seabirds on the reef.

Tendencias en las Poblaciones de Aves Marinas Reproductoras a lo largo de la Gran Barrera de Arrecifes Resumen La Gran Barrera de Arrecife es un ecosistema icónico, conocido mundialmente por la riqueza de biodiversidad marina que incluye a miles de aves marinas tropicales en reproducción. A pesar de las indicaciones de la declinación localizada de algunas especies de aves marinas que datan desde tan temprano como mediados de la década de 1990, nunca se han cuantificado las tendencias de las poblaciones de aves marinas a lo largo del arrecife. Con una larga historia de impacto antropogénico y el cambio climático en curso, las aves marinas son los probables centinelas de este importante ecosistema. Usamos cuatro décadas de datos de monitoreo para estimar las tendencias específicas de sitio para nueve especies de aves marinas en 32 islas y cayos en todo el arrecife. Las tendencias variaron notablemente entre especies y sitios, aunque las declinaciones probables ocurrieron en 45% de las 86 combinaciones de especie por sitio analizadas en comparación con los incrementos al 14%. Combinamos las tendencias específicas de sitio para cinco especies con una tendencia multisitio con abundancia escalada. Lo anterior reveló declinaciones probables para las siguientes especies: Anous stolidus, Onychoprion fuscatus y Sula dactylatra, pero ningún cambio a largo plazo para las dos especies con mayor distribución: Thalasseus bergii y Sula leucogaster. Para Sula leucogaster, la estabilidad a largo plazo resultó principalmente de los incrementos en una gran colonia única en la isla Fairfax del Este, la cual compensó las declinaciones en casi todos los demás sitios. Aunque el crecimiento de la población de Sula leucogaster en la isla Fairfax del Este apunta hacia el éxito probable de la restauración del hábitat en la isla, también resalta una vulnerabilidad general en la que los grandes números de algunas especies están concentrados en un número reducido de sitios importantes. La identificación de los causantes de la variación en los cambios poblacionales en las especies y en los sitios mientras se asegura la protección a largo plazo de los sitios importantes será esencial para asegurar el futuro de las aves marinas del arrecife.

The evolutionary dynamics of the lion Panthera leo revealed by host and viral population genomics.

The lion Panthera leo is one of the world's most charismatic carnivores and is one of Africa's key predators. Here, we used a large dataset from 357 lions comprehending 1.13 megabases of sequence data and genotypes from 22 microsatellite loci to characterize its recent evolutionary history. Patterns of molecular genetic variation in multiple maternal (mtDNA), paternal (Y-chromosome), and biparental nuclear (nDNA) genetic markers were compared with patterns of sequence and subtype variation of the lion feline immunodeficiency virus (FIV(Ple)), a lentivirus analogous to human immunodeficiency virus (HIV). In spite of the ability of lions to disperse long distances, patterns of lion genetic diversity suggest substantial population subdivision (mtDNA Phi(ST) = 0.92; nDNA F(ST) = 0.18), and reduced gene flow, which, along with large differences in sero-prevalence of six distinct FIV(Ple) subtypes among lion populations, refute the hypothesis that African lions consist of a single panmictic population. Our results suggest that extant lion populations derive from several Pleistocene refugia in East and Southern Africa ( approximately 324,000-169,000 years ago), which expanded during the Late Pleistocene ( approximately 100,000 years ago) into Central and North Africa and into Asia. During the Pleistocene/Holocene transition ( approximately 14,000-7,000 years), another expansion occurred from southern refugia northwards towards East Africa, causing population interbreeding. In particular, lion and FIV(Ple) variation affirms that the large, well-studied lion population occupying the greater Serengeti Ecosystem is derived from three distinct populations that admixed recently.

Pathological manifestations of feline immunodeficiency virus (FIV) infection in wild African lions.

Feline immunodeficiency virus (FIV) causes AIDS in the domestic cat (Felis catus) but has not been explicitly associated with AIDS pathology in any of the eight free-ranging species of Felidae that are endemic with circulating FIV strains. African lion (Panthera leo) populations are infected with lion-specific FIV strains (FIVple), yet there remains uncertainty about the degree to which FIV infection impacts their health. Reported CD4+ T-lymphocyte depletion in FIVple-infected lions and anecdotal reports of lion morbidity associated with FIV seroprevalence emphasize the concern as to whether FIVple is innocuous or pathogenic. Here we monitored clinical, biochemical, histological and serological parameters among FIVple-positive (N=47) as compared to FIVple-negative (N=17) lions anesthetized and sampled on multiple occasions between 1999 and 2006 in Botswana. Relative to uninfected lions, FIVple-infected lions displayed a significant elevation in the prevalence of AIDS-defining conditions: lymphadenopathy, gingivitis, tongue papillomas, dehydration, and poor coat condition, as well as displaying abnormal red blood cell parameters, depressed serum albumin, and elevated liver enzymes and gamma globulin. Spleen and lymph node biopsies from free-ranging FIVple-infected lions (N=9) revealed evidence of lymphoid depletion, the hallmark pathology documented in immunodeficiency virus infections of humans (HIV-1), macaques, and domestic cats. We conclude that over time FIVple infections in free-ranging lions can lead to adverse clinical, immunological, and pathological outcomes in some individuals that parallel sequelae caused by lentivirus infection in humans (HIV), Asian macaques (SIV) and domestic cats (FIVfca).

Seroprevalence and genomic divergence of circulating strains of feline immunodeficiency virus among Felidae and Hyaenidae species.

Feline immunodeficiency virus (FIV) infects numerous wild and domestic feline species and is closely related to human immunodeficiency virus (HIV) and simian immunodeficiency virus (SIV). Species-specific strains of FIV have been described for domestic cat (Felis catus), puma (Puma concolor), lion (Panthera leo), leopard (Panthera pardus), and Pallas' cat (Otocolobus manul). Here, we employ a three-antigen Western blot screening (domestic cat, puma, and lion FIV antigens) and PCR analysis to survey worldwide prevalence, distribution, and genomic differentiation of FIV based on 3,055 specimens from 35 Felidae and 3 Hyaenidae species. Although FIV infects a wide variety of host species, it is confirmed to be endemic in free-ranging populations of nine Felidae and one Hyaenidae species. These include the large African carnivores (lion, leopard, cheetah, and spotted hyena), where FIV is widely distributed in multiple populations; most of the South American felids (puma, jaguar, ocelot, margay, Geoffroy's cat, and tigrina), which maintain a lower FIV-positive level throughout their range; and two Asian species, the Pallas' cat, which has a species-specific strain of FIV, and the leopard cat, which has a domestic cat FIV strain in one population. Phylogenetic analysis of FIV proviral sequence demonstrates that most species for which FIV is endemic harbor monophyletic, genetically distinct species-specific FIV strains, suggesting that FIV transfer between cat species has occurred in the past but is quite infrequent today.