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1.
Qiita: rapid, web-enabled microbiome meta-analysis.
Gonzalez, Antonio; Navas-Molina, Jose A; Kosciolek, Tomasz; McDonald, Daniel; Vázquez-Baeza, Yoshiki; Ackermann, Gail; DeReus, Jeff; Janssen, Stefan; Swafford, Austin D; Orchanian, Stephanie B; Sanders, Jon G; Shorenstein, Joshua; Holste, Hannes; Petrus, Semar; Robbins-Pianka, Adam; Brislawn, Colin J; Wang, Mingxun; Rideout, Jai Ram; Bolyen, Evan; Dillon, Matthew; Caporaso, J Gregory; Dorrestein, Pieter C; Knight, Rob.
Nat Methods ; 15(10): 796-798, 2018 10.
Article in English | MEDLINE | ID: mdl-30275573

ABSTRACT

Multi-omic insights into microbiome function and composition typically advance one study at a time. However, in order for relationships across studies to be fully understood, data must be aggregated into meta-analyses. This makes it possible to generate new hypotheses by finding features that are reproducible across biospecimens and data layers. Qiita dramatically accelerates such integration tasks in a web-based microbiome-comparison platform, which we demonstrate with Human Microbiome Project and Integrative Human Microbiome Project (iHMP) data.


Subject(s)
Computational Biology/methods , Internet , Metagenomics , Microbiota , Software , Humans , User-Computer Interface
2.
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Bolyen, Evan; Rideout, Jai Ram; Dillon, Matthew R; Bokulich, Nicholas A; Abnet, Christian C; Al-Ghalith, Gabriel A; Alexander, Harriet; Alm, Eric J; Arumugam, Manimozhiyan; Asnicar, Francesco; Bai, Yang; Bisanz, Jordan E; Bittinger, Kyle; Brejnrod, Asker; Brislawn, Colin J; Brown, C Titus; Callahan, Benjamin J; Caraballo-Rodríguez, Andrés Mauricio; Chase, John; Cope, Emily K; Da Silva, Ricardo; Diener, Christian; Dorrestein, Pieter C; Douglas, Gavin M; Durall, Daniel M; Duvallet, Claire; Edwardson, Christian F; Ernst, Madeleine; Estaki, Mehrbod; Fouquier, Jennifer; Gauglitz, Julia M; Gibbons, Sean M; Gibson, Deanna L; Gonzalez, Antonio; Gorlick, Kestrel; Guo, Jiarong; Hillmann, Benjamin; Holmes, Susan; Holste, Hannes; Huttenhower, Curtis; Huttley, Gavin A; Janssen, Stefan; Jarmusch, Alan K; Jiang, Lingjing; Kaehler, Benjamin D; Kang, Kyo Bin; Keefe, Christopher R; Keim, Paul; Kelley, Scott T; Knights, Dan.
Nat Biotechnol ; 37(9): 1091, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31399723

ABSTRACT

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

3.
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Bolyen, Evan; Rideout, Jai Ram; Dillon, Matthew R; Bokulich, Nicholas A; Abnet, Christian C; Al-Ghalith, Gabriel A; Alexander, Harriet; Alm, Eric J; Arumugam, Manimozhiyan; Asnicar, Francesco; Bai, Yang; Bisanz, Jordan E; Bittinger, Kyle; Brejnrod, Asker; Brislawn, Colin J; Brown, C Titus; Callahan, Benjamin J; Caraballo-Rodríguez, Andrés Mauricio; Chase, John; Cope, Emily K; Da Silva, Ricardo; Diener, Christian; Dorrestein, Pieter C; Douglas, Gavin M; Durall, Daniel M; Duvallet, Claire; Edwardson, Christian F; Ernst, Madeleine; Estaki, Mehrbod; Fouquier, Jennifer; Gauglitz, Julia M; Gibbons, Sean M; Gibson, Deanna L; Gonzalez, Antonio; Gorlick, Kestrel; Guo, Jiarong; Hillmann, Benjamin; Holmes, Susan; Holste, Hannes; Huttenhower, Curtis; Huttley, Gavin A; Janssen, Stefan; Jarmusch, Alan K; Jiang, Lingjing; Kaehler, Benjamin D; Kang, Kyo Bin; Keefe, Christopher R; Keim, Paul; Kelley, Scott T; Knights, Dan.
Nat Biotechnol ; 37(8): 852-857, 2019 08.
Article in English | MEDLINE | ID: mdl-31341288

Subject(s)
Computational Biology , Data Science , Microbiota , Software , Databases, Factual , Humans
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