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1.
TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8 T Cell-Fate Decision.
Immunity
; 51(5): 840-855.e5, 2019 11 19.
Article
in English
| MEDLINE | ID: mdl-31606264
2.
Assessing GPT-4 for cell type annotation in single-cell RNA-seq analysis.
Nat Methods
; 2024 Mar 25.
Article
in English
| MEDLINE | ID: mdl-38528186
3.
Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers.
Nature
; 596(7870): 126-132, 2021 08.
Article
in English
| MEDLINE | ID: mdl-34290408
4.
SifiNet: a robust and accurate method to identify feature gene sets and annotate cells.
Nucleic Acids Res
; 52(9): e46, 2024 May 22.
Article
in English
| MEDLINE | ID: mdl-38647069
5.
DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence.
Nucleic Acids Res
; 51(5): 2046-2065, 2023 03 21.
Article
in English
| MEDLINE | ID: mdl-36762477
6.
Palo: spatially aware color palette optimization for single-cell and spatial data.
Bioinformatics
; 38(14): 3654-3656, 2022 07 11.
Article
in English
| MEDLINE | ID: mdl-35642896
7.
findPC: An R package to automatically select the number of principal components in single-cell analysis.
Bioinformatics
; 38(10): 2949-2951, 2022 05 13.
Article
in English
| MEDLINE | ID: mdl-35561205
8.
Controlling taxa abundance improves metatranscriptomics differential analysis.
BMC Microbiol
; 23(1): 60, 2023 03 07.
Article
in English
| MEDLINE | ID: mdl-36882742
9.
Author Correction: Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers.
Nature
; 598(7881): E1, 2021 Oct.
Article
in English
| MEDLINE | ID: mdl-34608287
10.
Preparation of PAMAM modified PVDF membrane and its adsorption performance for copper ions.
Environ Res
; 204(Pt A): 111943, 2022 03.
Article
in English
| MEDLINE | ID: mdl-34478725
11.
Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain.
J Neuroinflammation
; 18(1): 185, 2021 Aug 26.
Article
in English
| MEDLINE | ID: mdl-34446036
12.
Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq.
Nucleic Acids Res
; 47(19): e121, 2019 11 04.
Article
in English
| MEDLINE | ID: mdl-31428792
13.
Genetic Programming with Delayed Routing for Multiobjective Dynamic Flexible Job Shop Scheduling.
Evol Comput
; 29(1): 75-105, 2021.
Article
in English
| MEDLINE | ID: mdl-32375006
14.
Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes.
Nucleic Acids Res
; 46(1): e2, 2018 01 09.
Article
in English
| MEDLINE | ID: mdl-29325176
15.
Sex differences in gene regulation in the dorsal root ganglion after nerve injury.
BMC Genomics
; 20(1): 147, 2019 Feb 19.
Article
in English
| MEDLINE | ID: mdl-30782122
16.
PRMT5 is essential for the maintenance of chondrogenic progenitor cells in the limb bud.
Development
; 143(24): 4608-4619, 2016 12 15.
Article
in English
| MEDLINE | ID: mdl-27827819
17.
Single-cell regulome data analysis by SCRAT.
Bioinformatics
; 33(18): 2930-2932, 2017 Sep 15.
Article
in English
| MEDLINE | ID: mdl-28505247
18.
TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis.
Nucleic Acids Res
; 44(13): e117, 2016 07 27.
Article
in English
| MEDLINE | ID: mdl-27179027
19.
Turning publicly available gene expression data into discoveries using gene set context analysis.
Nucleic Acids Res
; 44(1): e8, 2016 Jan 08.
Article
in English
| MEDLINE | ID: mdl-26350211
20.
The Pluripotency Factor NANOG Binds to GLI Proteins and Represses Hedgehog-mediated Transcription.
J Biol Chem
; 291(13): 7171-82, 2016 Mar 25.
Article
in English
| MEDLINE | ID: mdl-26797124