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1.
Cell ; 186(20): 4454-4471.e19, 2023 09 28.
Article in English | MEDLINE | ID: mdl-37703875

ABSTRACT

Macrophages are heterogeneous and play critical roles in development and disease, but their diversity, function, and specification remain inadequately understood during human development. We generated a single-cell RNA sequencing map of the dynamics of human macrophage specification from PCW 4-26 across 19 tissues. We identified a microglia-like population and a proangiogenic population in 15 macrophage subtypes. Microglia-like cells, molecularly and morphologically similar to microglia in the CNS, are present in the fetal epidermis, testicle, and heart. They are the major immune population in the early epidermis, exhibit a polarized distribution along the dorsal-lateral-ventral axis, and interact with neural crest cells, modulating their differentiation along the melanocyte lineage. Through spatial and differentiation trajectory analysis, we also showed that proangiogenic macrophages are perivascular across fetal organs and likely yolk-sac-derived as microglia. Our study provides a comprehensive map of the heterogeneity and developmental dynamics of human macrophages and unravels their diverse functions during development.


Subject(s)
Macrophages , Humans , Cell Differentiation , Cell Lineage , Macrophages/cytology , Microglia , Organ Specificity
2.
BMC Genomics ; 25(1): 190, 2024 Feb 19.
Article in English | MEDLINE | ID: mdl-38369486

ABSTRACT

BACKGROUND: Non-alcoholic fatty liver disease (NAFLD) has rapidly become the most common cause of chronic liver disease in children and adolescents, but its etiology remains largely unknown. Adrenarche is a critical phase for hormonal changes, and any disturbance during this period has been linked to metabolic disorders, including obesity and dyslipidemia. However, whether there is a causal linkage between adrenarche disturbance and the increasing prevalence of NAFLD in children remains unclear. RESULTS: Using the young female rat as a model, we found that the liver undergoes a transient slowdown period of growth along with the rise of adrenal-derived sex steroid precursors during adrenarche. Specifically blocking androgen actions across adrenarche phase using androgen receptor antagonist flutamide largely increased liver weight by 47.97% and caused marked fat deposition in liver, thus leading to severe NAFLD in young female rats. Conversely, further administrating nonaromatic dihydrotestosterone (DHT) into young female rats across adrenarche phase could effectively reduce liver fat deposition. But, administration of the aromatase inhibitor, formestane across adrenarche had minimal effects on hepatic de novo fatty acid synthesis and liver fat deposition, suggesting adrenal-derived sex steroid precursors exert their anti-NAFLD effects in young females by converting into active androgens rather than into active estrogens. Mechanistically, transcriptomic profiling and integrated data analysis revealed that active androgens converted from the adrenal sex steroid precursors prevent NAFLD in young females primarily by inactivating hepatic sterol regulatory element-binding transcription factor 1 (Srebf1) signaling. CONCLUSIONS: We firstly evidenced that adrenarche-accompanied rise of sex steroid precursors plays a predominant role in preventing the incidence of NAFLD in young females by converting into active androgens and inactivating hepatic Srebf1 signaling. Our novel finding provides new insights into the etiology of NAFLD and is crucial in developing effective prevention and management strategies for NAFLD in children.


Subject(s)
Adrenarche , Non-alcoholic Fatty Liver Disease , Sterol Regulatory Element Binding Protein 1 , Animals , Child , Female , Humans , Rats , Androgens , Liver/metabolism , Non-alcoholic Fatty Liver Disease/etiology , Non-alcoholic Fatty Liver Disease/prevention & control , Non-alcoholic Fatty Liver Disease/metabolism , Steroids , Sterol Regulatory Element Binding Protein 1/metabolism
3.
Cytokine ; 173: 156421, 2024 01.
Article in English | MEDLINE | ID: mdl-37944420

ABSTRACT

BACKGROUND: The Shiga toxin-producing Escherichia coli (STEC) infects animals and induces acute intestinal inflammation. Long non-coding RNAs (lncRNAs) are known to play crucial roles in modulating inflammation response. However, it is not clear whether lncRNAs are involved in STEC-induced inflammation. METHODS AND RESULTS: To understand the association of lncRNAs with STEC infection, we used RNA-seq technology to analyze the profiles of lncRNAs in Mock-infected and STEC-infected human intestinal epithelial cells (HIECs). We detected a total of 702 lncRNAs differentially expressed by STEC infection. 583 differentially expressed lncRNAs acted as competitive microRNAs (miRNAs) binding elements in regulating the gene expression involved in TNF signaling pathway, IL-17 signaling pathway, PI3K-Akt signaling pathway, and apoptosis pathways. We analyzed 3 targeted genes, TRADD, TRAF1 and TGFB2, which were differentially regulated by mRNA-miRNA-lncRNA interaction network, potentially involved in the inflammatory and apoptotic response to STEC infection. Functional analysis of up/downstream genes associated with differentially expressed lncRNAs revealed their role in adheres junction and endocytosis. We also used the qRT-PCR technique to validate 8 randomly selected differentially expressed lncRNAs and mRNAs in STEC-infected HIECs. CONCLUSION: Our results, for the first time, revealed differentially expressed lncRNAs induced by STEC infection of HIECs. The results will help investigate the molecular mechanisms for the inflammatory responses induced by STEC.


Subject(s)
MicroRNAs , RNA, Long Noncoding , Shiga-Toxigenic Escherichia coli , Animals , Humans , Shiga-Toxigenic Escherichia coli/genetics , Shiga-Toxigenic Escherichia coli/metabolism , RNA, Long Noncoding/genetics , RNA, Long Noncoding/metabolism , RNA-Seq , Phosphatidylinositol 3-Kinases/genetics , MicroRNAs/genetics , Inflammation , Epithelial Cells/metabolism , Gene Expression Profiling
4.
BMC Vet Res ; 20(1): 180, 2024 May 07.
Article in English | MEDLINE | ID: mdl-38715028

ABSTRACT

BACKGROUND: Infectious bovine rhinotracheitis (IBR), caused by Bovine alphaherpesvirus-1 (BoAHV-1), is an acute, highly contagious disease primarily characterized by respiratory tract lesions in infected cattle. Due to its severe pathological damage and extensive transmission, it results in significant economic losses in the cattle industry. Accurate detection of BoAHV-1 is of paramount importance. In this study, we developed a real-time fluorescent quantitative PCR detection method for detecting BoAHV-1 infections. Utilizing this method, we tested clinical samples and successfully identified and isolated a strain of BoAHV-1.1 from positive samples. Subsequently, we conducted a genetic evolution analysis on the isolate strain's gC, TK, gG, gD, and gE genes. RESULTS: The study developed a real-time quantitative PCR detection method using SYBR Green II, achieving a detection limit of 7.8 × 101 DNA copies/µL. Specificity and repeatability analyses demonstrated no cross-reactivity with other related pathogens, highlighting excellent repeatability. Using this method, 15 out of 86 clinical nasal swab samples from cattle were found to be positive (17.44%), which was higher than the results obtained from conventional PCR detection (13.95%, 12/86). The homology analysis and phylogenetic tree analysis of the gC, TK, gG, gD, and gE genes of the isolated strain indicate that the JL5 strain shares high homology with the BoAHV-1.1 reference strains. Amino acid sequence analysis revealed that gC, gE, and gG each had two amino acid mutations, while the TK gene had one synonymous mutation and one H to Y mutation, with no amino acid mutations observed in the gD gene. Phylogenetic tree analysis indicated that the JL5 strain belongs to the BoAHV-1.1 genotype and is closely related to American strains such as C33, C14, and C28. CONCLUSIONS: The established real-time fluorescent quantitative PCR detection method exhibits good repeatability, specificity, and sensitivity. Furthermore, genetic evolution analysis of the isolated BoAHV-1 JL-5 strain indicates that it belongs to the BoAHV-1.1 subtype. These findings provide a foundation and data for the detection, prevention, and control Infectious Bovine Rhinotracheitis.


Subject(s)
Alphaherpesvirinae , Infectious Bovine Rhinotracheitis , Real-Time Polymerase Chain Reaction , Infectious Bovine Rhinotracheitis/virology , Animals , Cattle , Alphaherpesvirinae/classification , Alphaherpesvirinae/genetics , Alphaherpesvirinae/isolation & purification , Real-Time Polymerase Chain Reaction/methods , Real-Time Polymerase Chain Reaction/standards , Sensitivity and Specificity , Specimen Handling/veterinary , Phylogeny
5.
J Nanobiotechnology ; 22(1): 320, 2024 Jun 08.
Article in English | MEDLINE | ID: mdl-38849820

ABSTRACT

Simultaneously modulating the inflammatory microenvironment and promoting local bone regeneration is one of the main challenges in treating bone defects. In recent years, osteoimmunology has revealed that the immune system plays an essential regulatory role in bone regeneration and that macrophages are critical components. In this work, a mussel-inspired immunomodulatory and osteoinductive dual-functional hydroxyapatite nano platform (Gold/hydroxyapatite nanocomposites functionalized with polydopamine - PDA@Au-HA) is developed to accelerate bone tissues regeneration by regulating the immune microenvironment. PDA coating endows nanomaterials with the ability to scavenge reactive oxygen species (ROS) and anti-inflammatory properties, and it also exhibits an immunomodulatory ability to inhibit M1 macrophage polarization and activate M2 macrophage secretion of osteogenesis-related cytokines. Most importantly, this nano platform promotes the polarization of M2 macrophages and regulates the crosstalk between macrophages and pre-osteoblast cells to achieve bone regeneration. Au-HA can synergistically promote vascularized bone regeneration through sustained release of Ca and P particles and gold nanoparticles (NPs). This nano platform has a synergistic effect of good compatibility, scavenging of ROS, and anti-inflammatory and immunomodulatory capability to accelerate the bone repair process. Thus, our research offers a possible therapeutic approach by exploring PDA@Au-HA nanocomposites as a bifunctional platform for tissue regeneration.


Subject(s)
Bivalvia , Bone Regeneration , Durapatite , Gold , Indoles , Macrophages , Osteogenesis , Bone Regeneration/drug effects , Durapatite/chemistry , Durapatite/pharmacology , Animals , Mice , Gold/chemistry , Gold/pharmacology , Bivalvia/chemistry , RAW 264.7 Cells , Macrophages/drug effects , Indoles/chemistry , Indoles/pharmacology , Osteogenesis/drug effects , Reactive Oxygen Species/metabolism , Polymers/chemistry , Polymers/pharmacology , Nanocomposites/chemistry , Metal Nanoparticles/chemistry , Osteoblasts/drug effects , Anti-Inflammatory Agents/pharmacology , Anti-Inflammatory Agents/chemistry , Immunologic Factors/pharmacology , Immunologic Factors/chemistry , Cytokines/metabolism
6.
J Nanobiotechnology ; 22(1): 210, 2024 Apr 26.
Article in English | MEDLINE | ID: mdl-38671474

ABSTRACT

Carbon dots (CDs) are novel carbon-based nanomaterials that have been used as photosensitizer-mediated photodynamic therapy (PDT) in recent years due to their good photosensitizing activity. Photosensitizers (PSs) are main components of PDT that can produce large amounts of reactive oxygen species (ROS) when stimulated by light source, which have the advantages of low drug resistance and high therapeutic efficiency. CDs can generate ROS efficiently under irradiation and therefore have been extensively studied in disease local phototherapy. In tumor therapy, CDs can be used as PSs or PS carriers to participate in PDT and play an extremely important role. In bacterial infectious diseases, CDs exhibit high bactericidal activity as CDs are effective in disrupting bacterial cell membranes leading to bacterial death upon photoactivation. We focus on recent advances in the therapy of cancer and bacteria with CDs, and also briefly summarize the mechanisms and requirements for PSs in PDT of cancer, bacteria and other diseases. We also discuss the role CDs play in combination therapy and the potential for future applications against other pathogens.


Subject(s)
Bacterial Infections , Carbon , Neoplasms , Photochemotherapy , Photosensitizing Agents , Quantum Dots , Photosensitizing Agents/therapeutic use , Photosensitizing Agents/pharmacology , Photosensitizing Agents/chemistry , Photochemotherapy/methods , Humans , Neoplasms/drug therapy , Carbon/chemistry , Carbon/therapeutic use , Carbon/pharmacology , Bacterial Infections/drug therapy , Quantum Dots/chemistry , Quantum Dots/therapeutic use , Animals , Reactive Oxygen Species/metabolism
7.
J Nanobiotechnology ; 21(1): 501, 2023 Dec 21.
Article in English | MEDLINE | ID: mdl-38129853

ABSTRACT

Oral and maxillofacial diseases are one of the most prevalent diseases in the world, which not only seriously affect the health of patients' oral and maxillofacial tissues, but also bring serious economic and psychological burdens to patients. Therefore, oral and maxillofacial diseases require effective treatment. Traditional treatments have limited effects. In recent years, nature exosomes have attracted increasing attention due to their ability to diagnose and treat diseases. However, the application of nature exosomes is limited due to low yield, high impurities, lack of targeting, and high cost. Engineered exosomes can be endowed with better comprehensive therapeutic properties by modifying exosomes of parent cells or directly modifying exosomes, and biomaterial loading exosomes. Compared with natural exosomes, these engineered exosomes can achieve more effective diagnosis and treatment of oral and maxillary system diseases, and provide reference and guidance for clinical application. This paper reviews the engineering modification methods of exosomes and the application of engineered exosomes in oral and maxillofacial diseases and looks forward to future research directions.


Subject(s)
Exosomes , Humans , Biocompatible Materials
8.
Eur J Immunol ; 51(2): 487-489, 2021 02.
Article in English | MEDLINE | ID: mdl-32976648

ABSTRACT

In women with a history of recurrent miscarriage, the uterine CD56+ cell density in subjects with subsequent euploid miscarriage was significantly higher than those with subsequent aneuploid miscarriage. Both endometrial and embryonic factors should be investigated when interpreting uterine CD56+ cell density results relating to recurrent miscarriage.


Subject(s)
Abortion, Habitual/metabolism , Abortion, Habitual/pathology , CD56 Antigen/metabolism , Uterus/metabolism , Uterus/pathology , Adult , Cell Count/methods , Endometrium/metabolism , Endometrium/pathology , Female , Humans , Pregnancy
9.
Ecotoxicol Environ Saf ; 248: 114287, 2022 Dec 15.
Article in English | MEDLINE | ID: mdl-36371889

ABSTRACT

Polybrominated diphenyl ethers (PBDEs) are widely used as brominated flame retardants in the manufacturing industry, belonging to persistent organic pollutants in the environment. Planarians are the freshwater worms, with strong regenerative ability and extreme sensitivity to environmental toxicants. This study aimed to evaluate the potential acute comprehensive effects of PBDE-47/-209 on freshwater planarians. Methods to detect the effects include: detection of oxidative stress, observation of morphology and histology, detection of DNA fragmentation, and detection of cell proliferation and apoptosis. In the PBDE-47 treatment group, planarians showed increased oxidative stress intensity, severe tissue damage, increased DNA fragmentation level, and increased cell proliferation and apoptosis. In the PBDE-209 treatment group, planarians showed decreased oxidative stress intensity, slight tissue damage, almost unchanged DNA fragmentation level and apoptosis, proliferation increased only on the first day after treatment. In conclusion, both PBDE-47 and PBDE-209 are dangerous environmental hazardous material that can disrupt planarians homeostasis, while the toxicity of PBDE-47 is sever than PBDE-209 that PBDE-47 can lead to the death of planarians.


Subject(s)
Flame Retardants , Planarians , Animals , Halogenated Diphenyl Ethers/toxicity , Planarians/metabolism , Flame Retardants/toxicity , Flame Retardants/metabolism , DNA Damage , Apoptosis , Homeostasis , Cell Proliferation
10.
Biomarkers ; 26(1): 55-64, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33225756

ABSTRACT

PURPOSE: To verify antioxidant responses and lipid peroxidation can be used as sensitive indicators for the risk assessment of the Wei River. MATERIAL AND METHODS: We investigate the effects of the Wei River on oxidative stress of planarian Dugesia japonica by antioxidant parameters, and use ICP-MS to measure the heavy metals in the Wei River. Then, we observe the effects of three common heavy metal ions (Cr3+, Hg2+, Pb2+) on the regeneration of planarians on morphological and histological levels. RESULTS: The significant changes of antioxidant parameters (SOD, CAT, GPx, GST, T-AOC) and MDA content indicate that oxidative stress is induced after the Wei River exposure on planarians, though the heavy metals in the Wei River are not exceeding the standards. Then, the regeneration of planarians shows different degree of morphological and histological damage after Cr3+, Hg2+ and Pb2+ exposure. CONCLUSION: We speculate that the heavy metal ions in the Wei River, especially Cr3+, Hg2+ and Pb2+, may give rise to oxidative damage on planarians. These findings illustrate that planarian can serve as an indicator of aquatic ecosystem pollution, antioxidant responses and lipid peroxidation can also be used as sensitive indicators and provide an excellent opportunity for urban river risk assessment.


Subject(s)
Antioxidants/metabolism , Metals, Heavy/toxicity , Planarians/drug effects , Water Pollutants, Chemical/toxicity , Animals , Ecosystem , Environmental Monitoring , Humans , Lipid Peroxidation/drug effects , Oxidative Stress/drug effects , Risk Assessment , Rivers
11.
Plant Dis ; 105(4): 1174-1176, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33064625

ABSTRACT

New Guinea impatiens (NGI, Impatiens hawkeri) are popular bedding plants that can be affected by a number of pathogens. Using 16S rDNA sequencing and genus-specific PCR, we identified the first Dickeya dianthicola strain isolated from NGI presented with blackleg symptoms, herein designated as D. dianthicola 67-19. Here, we report a high-quality complete and annotated genome sequence of D. dianthicola 67-19. The 4,851,809 bp genome was assembled with Nanopore reads and polished with Illumina reads, yielding 422× and 105× coverage, respectively. This closed genome provides a resource for future research on comparative genomics and biology of D. dianthicola, which could translate to improved detection and disease management.


Subject(s)
Impatiens , Solanum tuberosum , Dickeya , New Guinea , Plant Diseases
12.
Plant Dis ; 105(1): 196-198, 2021 Jan.
Article in English | MEDLINE | ID: mdl-32720879

ABSTRACT

Pectobacterium spp. are a major cause of loss in vegetable and ornamental plant production. One of these species, Pectobacterium carotovorum, can cause soft rot disease on many plants, particularly potato. These diseases lead to significant economic loss and pose food security threats by reducing crop yields in the field, in transit, and during storage. The Gram-negative enterobacterium P. carotovorum WPP14 is a particularly virulent strain for which there is no available closed genome, limiting the molecular research for this important pathogen. Here, we report a high-quality complete and annotated genome sequence of P. carotovorum WPP14. The 4,892,225-bp genome was assembled with Nanopore reads and polished with Illumina reads, yielding 394× and 164× coverage, respectively. This closed genome provides a resource for research on improved detection and biology of P. carotovorum, which could translate into improved disease management.


Subject(s)
Pectobacterium , Solanum tuberosum , Bacteria , Pectobacterium/genetics , Pectobacterium carotovorum/genetics , Plant Diseases
13.
Foodborne Pathog Dis ; 18(10): 718-726, 2021 10.
Article in English | MEDLINE | ID: mdl-33534639

ABSTRACT

Staphylococcus aureus has been recognized as an important foodborne pathogen. However, knowledge about the epidemiology and genetic characteristics of S. aureus in the meat production chain from farm to market is limited. The aim of this study was to investigate the genetic characteristics of S. aureus in animal samples isolated from Xinjiang province farms and farmer' markets, by determining staphylococcal protein A (spa) repeat region and virulence factor typing, and by assessment of antimicrobial resistance. Out of 1324 samples, 128 (9.7%) were positive for S. aureus, 26 (2.0%) of them were identified as methicillin-resistant S. aureus (MRSA) and 88 (6.6%) of them were identified as vancomycin-resistant S. aureus (VRSA). Antimicrobial resistance was determined using the disk diffusion method. S. aureus isolates showed resistance to penicillin G (98.4%), clarithromycin (69.5%), erythromycin (69.5%), vancomycin (68.8%), and tetracycline (67.2%). A total of 80.4% of isolates showed resistance to three or more antimicrobial classes. PCR was used to detect ten virulence genes such as the enterotoxin (sea, seb, and sec), hemolysin (hla and hlb), clumping factor (clfA), and fibronectin-binding proteins A and B (fnbA and fnbB). Our study showed that isolates harbored two or seven virulence genes. All strains encode hla and clfA, and half of them encode hlb and enterotoxin genes. The spa typing results showed that the 128 isolates were grouped into 32 spa types. The main spa types were t127 (22.7%), t2592 (12.5%), t437 (10.9%), and t2616 (10.9%). Notably, isolates of t437 type accounted for 46.2% of the MRSA. Our data indicate that meats in the slaughterhouse and farmers' markets were contaminated with S. aureus. S. aureus virulence genes and spa types were diverse, and its antibiotic resistance was serious. The presence of MRSA and VRSA represents potential public health risks and warrants further investigation regarding the driving factors of such resistance and their transmission to humans.


Subject(s)
Methicillin-Resistant Staphylococcus aureus , Staphylococcal Infections , Animals , Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial/genetics , Humans , Meat , Methicillin-Resistant Staphylococcus aureus/genetics , Microbial Sensitivity Tests , Prevalence , Staphylococcal Infections/epidemiology , Staphylococcal Infections/veterinary , Staphylococcus aureus/genetics
14.
Foodborne Pathog Dis ; 18(12): 867-872, 2021 12.
Article in English | MEDLINE | ID: mdl-34415781

ABSTRACT

Non-O157 Shiga toxin (stx)-producing Escherichia coli (STEC) is recognized as an important human diarrheal pathogen. Cattle are the principal reservoirs of STEC, although other animals can be carriers. Humans are mainly infected by consuming contaminated drinking water or food. This study aimed to evaluate the virulence potential of isolated bovine non-O157 STEC to humans in Xinjiang. During 2015-2017, 978 rectal swab samples collected from cattle of 5 farms were screened for the presence of Shiga toxin-encoding genes by polymerase chain reaction. Strains identified as STEC were isolated from rectal swab samples, and were characterized for stx subtype, virulence genes, O serogroup, phylogenetic group, and hemolytic phenotype. Among 125 non-O157 STEC isolates, the prevalence percentages of stx1 and stx2 were 22 and 21, respectively, and 57% of the isolates carried both Shiga toxins. The stx subtypes were mainly found in the combination of stx1a/stx2a (57%), stx2a (20%), stx1a (22%), stx1a/stx2a/stx2c (1%), and stx2a/stx2c (1%). The enterohemolysin (ehxA) gene was found in 94% of the isolates. No intimin (eae) was detected. Hemolysis was observed in 33% of the isolates. Two STEC serogroups O145 (17%) and O113 (2%) were found, which were reported to be associated with outbreaks of human disease. Phylotyping assays showed that most strains largely belong to groups A (91%) and B1 (7%). The results of this study can help improve our understanding of the epidemiological aspects of bovine STEC and devise strategies for protection against it.


Subject(s)
Escherichia coli Infections , Escherichia coli Proteins , Shiga-Toxigenic Escherichia coli , Animals , Cattle , China/epidemiology , Escherichia coli Infections/epidemiology , Escherichia coli Infections/veterinary , Escherichia coli Proteins/genetics , Phylogeny , Shiga Toxin 2/genetics , Shiga-Toxigenic Escherichia coli/genetics , Virulence/genetics
15.
Microbiology (Reading) ; 166(9): 837-848, 2020 09.
Article in English | MEDLINE | ID: mdl-32639227

ABSTRACT

Bacterial soft rot caused by the bacteria Dickeya and Pectobacterium is a destructive disease of vegetables, as well as ornamental plants. Several management options exist to help control these pathogens. Because of the limited success of these approaches, there is a need for the development of alternative methods to reduce losses. In this study, we evaluated the effect of potassium tetraborate tetrahydrate (PTB) on the growth of six Dickeya and Pectobacterium spp. Disc diffusion assays showed that Dickeya spp. and Pectobacterium spp. differ in their sensitivity to PTB. Spontaneous PTB-resistant mutants of Pectobacterium were identified and further investigation of the mechanism of PTB resistance was conducted by full genome sequencing. Point mutations in genes cpdB and supK were found in a single Pectobacterium atrosepticum PTB-resistant mutant. Additionally, point mutations in genes prfB (synonym supK) and prmC were found in two independent Pectobacterium brasiliense PTB-resistant mutants. prfB and prmC encode peptide chain release factor 2 and its methyltransferase, respectively. We propose the disruption of translation activity due to PTB leads to Pectobacterium growth inhibition. The P. atrosepticum PTB-resistant mutant showed altered swimming motility. Disease severity was reduced for P. atrosepticum-inoculated potato stems sprayed with PTB. We discuss the potential risk of selecting for bacterial resistance to this chemical.


Subject(s)
Anti-Bacterial Agents/pharmacology , Borates/pharmacology , Dickeya/drug effects , Pectobacterium/drug effects , Solanum tuberosum/microbiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Dickeya/genetics , Dickeya/growth & development , Dickeya/physiology , Disk Diffusion Antimicrobial Tests , Drug Resistance, Bacterial/genetics , Genes, Bacterial , Genetic Complementation Test , Movement , Pectobacterium/genetics , Pectobacterium/growth & development , Pectobacterium/physiology , Peptide Termination Factors/genetics , Peptide Termination Factors/metabolism , Plant Diseases/microbiology , Point Mutation , Protein Methyltransferases/genetics , Protein Methyltransferases/metabolism
16.
Biochem Biophys Res Commun ; 532(3): 355-361, 2020 11 12.
Article in English | MEDLINE | ID: mdl-32888646

ABSTRACT

Dugesia japonica, belonging to Platyhelminthes, plays an important role in the animal evolution and is well known for its extraordinary regenerative ability. Mitogen activated protein kinase (MAPK) pathway is an important cell signaling pathway that converts extracellular stimuli into a wide range of cellular responses. The MAP-extracellular signal-regulated kinase (MEK) is a main component of MAPK/ERK signaling, but there are few studies on mek gene in planarians. In this study, we observe the expression patterns of Djmek1 and Djmek2 in planarians, and find that both of the two genes are required for the planarian regeneration. At the same time, we also find that both Djmek1 and Djmek2 are involved in the planarian regeneration by regulation of cell proliferation and apoptosis. Together, our findings show that the functions of the two genes are similar and complementary, and they play an important role in the regeneration of planarians.


Subject(s)
Helminth Proteins/genetics , Helminth Proteins/physiology , Mitogen-Activated Protein Kinase Kinases/genetics , Mitogen-Activated Protein Kinase Kinases/physiology , Planarians/genetics , Planarians/physiology , Regeneration/genetics , Regeneration/physiology , Animals , Apoptosis/genetics , Apoptosis/physiology , Cell Proliferation/genetics , Cell Proliferation/physiology , Gene Expression Regulation , Helminth Proteins/antagonists & inhibitors , MAP Kinase Signaling System , Mitogen-Activated Protein Kinase Kinases/antagonists & inhibitors , RNA Interference , RNA, Messenger/genetics , RNA, Messenger/metabolism
17.
J Obstet Gynaecol Res ; 46(6): 858-863, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32189458

ABSTRACT

AIM: This aim of this study was to determine the association between uterine natural killer (uNK) cell density and chronic endometritis (CE). METHODS: Endometrial biopsies from 135 women with recurrent miscarriage were obtained precisely 7 days after luteinizing hormone surge in natural cycles. Endometrial sections were immunostained for CD56 for uNK cells and CD138 for plasma cells, respectively. Uterine NK cell counting was performed according to a standardized protocol and results were expressed as percentage of CD56+ cells/ total stromal cells. High uNK cell density was defined as >4.5% and CE was diagnosed when the plasma cell density > 5.15 cells/ 10 mm2 . RESULTS: The uNK cells density in women with CE (median, 5.1%; range, 3.4-8.8%) was significantly (P < 0.05) higher than that of those without CE (median, 3.8%; range, 1.2%-7.3%). The prevalence of high uNK cell density in women with CE (11/29, 37.9%) was significantly (P < 0.05) higher than that of women without CE (8/106, 7.5%). CONCLUSION: To conclude, there was a significant association between high uNK cell density and CE. In women with high uNK cell density, plasma cell should be examined to determine if the underlying cause is associated with CE.


Subject(s)
Abortion, Habitual/immunology , Endometritis/pathology , Killer Cells, Natural/immunology , Adult , Case-Control Studies , Endometrium/metabolism , Female , Humans , Lymphocyte Count , Pregnancy , Uterus/immunology
18.
Plant Dis ; 2020 Nov 17.
Article in English | MEDLINE | ID: mdl-33200972

ABSTRACT

New Guinea impatiens (NGI), Impatiens hawkeri, has a $54-million wholesale market value in the United States (National Agricultural Statistics Service, 2019) and is highly resistant to Impatiens downy mildew (Plasmopara obducens) according to growers' experience (Warfield, 2011). In March 2019, NGI cv. Petticoat White in a New York greenhouse showed wilting, black stem streaks and vascular discoloration, with a 20% disease incidence. Symptomatic tissue pieces were added to sterile water in a test tube and streaks made on potato dextrose agar (PDA). After incubation at 26oC for two days, the most abundant colony type (mucoid, pale yellow) was transferred to PDA. One representative colony was selected and labeled as isolate 67-19. A single colony of isolate 67-19 was transferred to lysogeny broth (LB) (Bertani, 1951) and cultured at 28oC. Genomic DNA was extracted and polymerase chain reaction (PCR) performed using the 16S rRNA gene universal primers fD2 and rP1 resulting in a partial 16S rRNA amplicon (Weisburg et al., 1991). Basic Local Alignment Search Tool (BLASTn) analysis (Altschul et al., 1990) showed 99% identity with sequences of species belonging to Dickeya. Different primer sets have been developed to detect and identify the genus Dickeya and its various species (Pritchard et al., 2013). The primer sets used for genus identification, dnaX (Slawiak et al., 2009), Df/Dr (Laurila et al., 2010) and ADE1/ADE2 (Nassar et al., 1996), resulted in 500-bp, 133-bp, and 420-bp amplicons, respectively. Results suggested the bacterium was a Dickeya sp. To determine whether the species could be D. dianthicola, the specific primer set DIA-A was used (Pritchard et al., 2013) and the expected product of 150-bp was obtained. BLASTn results showed that the partial dnaX sequence (GenBank accession MT895847) of isolate 67-19 had 99% identity with the sequence of D. dianthicola strain RNS04.9 isolated in 2004 from potato (Solanum tuberosum) in France (GenBank accession CP017638.1). Therefore, this isolate 67-19 was designated as D. dianthicola. The complete genome of D. dianthicola strain 67-19 was generated using Nanopore and Illumina sequencing (GenBank accession CP051429) (Liu et al., 2020). Average nucleotide identity (ANI) determined by FastANI (v1.1) (Jain et al., 2018) showed 97.43% identity between the genome of D. dianthicola strain 67-19 and that of D. dianthicola strain NCPPB 453 (GenBank accession GCA_000365305.1), isolated in 1957 from carnation (Dianthus caryophyllus) in the UK. The pathogenicity of D. dianthicola strain 67-19 was shown on NGI cultivars Petticoat White and Tamarinda White. In July 2020, sterile toothpicks were used to make wounds and to transfer bacteria from a 48-hr PDA culture of D. dianthicola strain 67-19 to the stems of four plants of each cultivar. Four plants of each cultivar were mock inoculated similarly and all wound sites were wrapped with Parafilm before placing plants on a greenhouse bench. Ten days later, stems inoculated with D. dianthicola strain 67-19 showed necrotic lesions similar to the original symptoms, while control plants did not show symptoms. One month after inoculation, bacteria were re-isolated from all symptomatic stems. PCR was performed on the re-isolated bacteria as described. The dnaX sequence (GenBank accession MT895847) was confirmed to match that of D. dianthicola strain 67-19 (GenBank accession CP051429) 100% and fragments of the expected size were amplified (Liu et al., 2020). Stab inoculations of strain 67-19 into potato stems and tubers also resulted in blackleg and soft rot symptoms at the sites of inoculation, while mock-inoculated stem and tuber showed no symptoms. The sequence of the dnaX gene of the re-isolated bacterium from inoculated potatoes was confirmed to match that of D. dianthicola strain 67-19. To our knowledge, this is the first report of blackleg of New Guinea impatiens caused by D. dianthicola in the United States and worldwide. Since the disease caused by D. dianthicola poses a significant threat to the ornamentals and potato industries (Charkowski et al., 2020), further research on genome biology, epidemiology and management options is needed. LITERATURE CITED Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. Journal of Molecular Biology 215:403-410. Bertani, G. 1951. Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli. Journal of Bacteriology 62:293-300. Charkowski, A., Sharma, K., Parker, M.L., Secor, G.A., and Elphinstone, J. 2020. Bacterial diseases of potato. Pages 351-388 in: The Potato Crop: Its Agricultural, Nutritional and Social Contribution to Humankind, H. Campos and O. Ortiz, eds. Springer International Publishing, Cham. Jain, C., Rodriguez-R, L.M., Phillippy, A.M., Konstantinidis, K.T., and Aluru, S. 2018. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries. Nature Communications 9:5114. Laurila, J., Hannukkala, A., Nykyri, J., Pasanen, M., Hélias, V., Garlant, L., and Pirhonen, M. 2010. Symptoms and yield reduction caused by Dickeya spp. strains isolated from potato and river water in Finland. European Journal of Plant Pathology 126:249-262. Liu, Y., Helmann, T., Stodghill, P., and Filiatrault, M. 2020. Complete genome sequence resource for the necrotrophic plant-pathogenic bacterium Dickeya dianthicola 67-19 isolated from New Guinea Impatiens. Plant Disease. https://doi.org/10.1094/PDIS-09-20-1968-A. Nassar, A., Darrasse, A., Lemattre, M., Kotoujansky, A., Dervin, C., Vedel, R., and Bertheau, Y. 1996. Characterization of Erwinia chrysanthemi by pectinolytic isozyme polymorphism and restriction fragment length polymorphism analysis of PCR-amplified fragments of pel genes. Applied and Environmental Microbiology 62:2228-2235. National Agricultural Statistics Service. 2019. Floriculture crops 2018 summary. ISSN: 1949-0917. https://downloads.usda.library.cornell.edu/usda-esmis/files/0p0966899/rr1728124/76537c134/floran19.pdf Pritchard, L., Humphris, S., Saddler, G.S., Parkinson, N.M., Bertrand, V., Elphinstone, J.G., and Toth, I.K. 2013. Detection of phytopathogens of the genus Dickeya using a PCR primer prediction pipeline for draft bacterial genome sequences. Plant Pathology 62:587-596. Slawiak, M., van Beckhoven, J.R.C.M., Speksnijder, A.G.C.L., Czajkowski, R., Grabe, G., and van der Wolf, J.M. 2009. Biochemical and genetical analysis reveal a new clade of biovar 3 Dickeya spp. strains isolated from potato in Europe. European Journal of Plant Pathology 125:245-261. Warfield, C.Y. (2011). Downy Mildew of Impatiens. In GrowerTalks. https://www.growertalks.com/Article/?articleid=18921 Weisburg, W.G., Barns, S.M., Pelletier, D.A., and Lane, D.J. 1991. 16S ribosomal DNA amplification for phylogenetic study. Journal of Bacteriology 173:697-703.

19.
Clin Exp Hypertens ; 41(4): 366-372, 2019.
Article in English | MEDLINE | ID: mdl-29939765

ABSTRACT

BACKGROUND: Hypertension is a significant global public health problem and an important risk factor for cardiovascular diseases. We aimed to determine treatment and control rates of hypertension and to explore related risk factors by urban and rural areas. METHODS: A cross-sectional survey of 14,956 participants (≥ 15 years) was conducted in Jilin Province, China from July 2014 to December 2015 using questionnaire forms and physical measurements. RESULTS: Total rates of hypertension treatment, control, and controlled blood pressure among treated subjects were 31.7%, 8.8%, and 27.9% in the Jilin Province. Rates of hypertension treatment, control, and controlled blood pressure among treated subjects were 35.9%, 13.7%, and 38.3% in urban areas and 28.4%, 5.0%, and 17.5% in rural areas, respectively. Higher treatment of hypertension was associated with older age, female sex, other races (except Han), and higher body fat percentage in both areas. Among urban residents, higher education was additionally associated with higher treatment of hypertension; among rural residents, a family history of coronary artery disease and unemployment were associated with higher treatment of hypertension. Higher control of hypertension was associated with unemployment, married status, higher education, healthy body mass index, lower abdominal waist circumference, non-smoking status, and lower visceral adiposity index in urban residents; higher control of hypertension was associated with younger age in rural residents. CONCLUSION: Treatment and control rates of hypertension in urban and rural areas were lower than the national average; blood pressure control in patients taking antihypertensive drugs needs further improvement.


Subject(s)
Antihypertensive Agents/therapeutic use , Blood Pressure , Hypertension/drug therapy , Rural Population/statistics & numerical data , Urban Population/statistics & numerical data , Adolescent , Adult , Age Factors , Aged , Aged, 80 and over , Body Mass Index , China , Cross-Sectional Studies , Female , Humans , Hypertension/physiopathology , Intra-Abdominal Fat , Male , Middle Aged , Risk Factors , Sex Factors , Socioeconomic Factors , Surveys and Questionnaires , Waist Circumference , Young Adult
20.
Clin Chem ; 64(12): 1743-1752, 2018 12.
Article in English | MEDLINE | ID: mdl-30237148

ABSTRACT

BACKGROUND: A recent study has reported that the microbiota in endometrial fluid of patients receiving in vitro fertilization and embryo transfer (IVF-ET) may predict implantation and pregnancy rates. However, studies are lacking that simultaneously compare the microbiota between endometrial fluid and tissue samples. Whether the microbiota composition in endometrial fluid reflects that in the endometrial tissue remains unclear. METHODS: We systematically profiled the microbiota in endometrial fluid and tissue samples of IVF-ET patients using massively parallel sequencing. The bacterial 16S ribosomal RNA gene (V4 region) was PCR-amplified. Sequencing reads with >98% nucleotide identity were clustered as a bacterial taxon. To account for the different number of reads per sample, we normalized the read counts of each taxon before comparing its relative abundances across samples. RESULTS: Thirteen taxa, including Verrucomicrobiaceae, Brevundimonas, Achromobacter, Exiguobacterium, and Flavobacterium, were consistently detected only in endometrial tissue samples but not fluid samples. Eight taxa were detected in fluid but not tissue. Twenty-two taxa were differentially abundant between fluid and tissue samples (adjusted P values, 4.1 × 10-25 to 0.025). The numbers of taxa identified per 1000 sequencing reads, diversity, and evenness in fluid samples were smaller than those in tissue samples. CONCLUSIONS: Our data suggest that the microbiota composition in endometrial fluid does not fully reflect that in endometrial tissue. Sampling from both endometrial fluid and biopsy allows a more comprehensive view of microbial colonization. Further efforts are needed to identify the preanalytical effects, including sampling sites, methods, and sequencing depth, on profiling endometrial microbiota.


Subject(s)
Abortion, Habitual/microbiology , Bacteria/genetics , Endometrium/microbiology , Microbiota/physiology , Adult , Body Fluids/microbiology , Female , Fertilization in Vitro , High-Throughput Nucleotide Sequencing/methods , Humans , Microbiota/genetics , RNA, Ribosomal, 16S/genetics
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