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1.
Mol Cancer ; 23(1): 57, 2024 03 19.
Article in English | MEDLINE | ID: mdl-38504268

ABSTRACT

Urine-based testing is promising for noninvasive diagnosis of urothelial carcinoma (UC) but has suboptimal sensitivity for early-stage tumors. Herein, we developed a multitarget urine tumor DNA test, UI-Seek, for UC detection and evaluated its clinical feasibility. The prediction model was developed in a retrospective cohort (n = 382), integrating assays for FGFR3 and TERT mutations and aberrant ONECUT2 and VIM methylation to generate a UC-score. The test performance was validated in a double-blinded, multicenter, prospective trial (n = 947; ChiCTR2300076543) and demonstrated a sensitivity of 91.37% and a specificity of 95.09%. The sensitivity reached 75.81% for low-grade Ta tumors and exceeded 93% in high-grade Ta and higher stages (T1 to T4). Simultaneous identification of both bladder and upper urinary tract tumors was enabled with sensitivities exceeding 90%. No significant confounding effects were observed regarding benign urological diseases or non-UC malignancies. The test showed improved sensitivities over urine cytology, the NMP22 test, and UroVysion FISH alongside comparable specificities. The single-target accuracy was greater than 98% as confirmed by Sanger sequencing. Post-surgery UC-score decreased in 97.7% of subjects. Overall, UI-Seek demonstrated robust performance and considerable potential for the early detection of UC.


Subject(s)
Carcinoma, Transitional Cell , Urinary Bladder Neoplasms , Humans , Urinary Bladder Neoplasms/diagnosis , Urinary Bladder Neoplasms/genetics , Urinary Bladder Neoplasms/pathology , Carcinoma, Transitional Cell/diagnosis , Carcinoma, Transitional Cell/genetics , Carcinoma, Transitional Cell/urine , Retrospective Studies , Prospective Studies , Sensitivity and Specificity , Treatment Outcome , DNA , Biomarkers, Tumor/genetics , Transcription Factors , Homeodomain Proteins
2.
Int J Mol Sci ; 25(8)2024 Apr 16.
Article in English | MEDLINE | ID: mdl-38673956

ABSTRACT

For a wide range of chronic autoimmune and inflammatory diseases in both adults and children, synthetic glucocorticoids (GCs) are one of the most effective treatments. However, besides other adverse effects, GCs inhibit bone mass at multiple levels, and at different ages, especially in puberty. Although extensive studies have investigated the mechanism of GC-induced osteoporosis, their target cell populations still be obscure. Here, our data show that the osteoblast subpopulation among Gli1+ metaphyseal mesenchymal progenitors (MMPs) is responsive to GCs as indicated by lineage tracing and single-cell RNA sequencing experiments. Furthermore, the proliferation and differentiation of Gli1+ MMPs are both decreased, which may be because GCs impair the oxidative phosphorylation(OXPHOS) and aerobic glycolysis of Gli1+ MMPs. Teriparatide, as one of the potential treatments for GCs in bone mass, is sought to increase bone volume by increasing the proliferation and differentiation of Gli1+ MMPs in vivo. Notably, our data demonstrate teriparatide ameliorates GC-caused bone defects by targeting Gli1+ MMPs. Thus, Gli1+ MMPs will be the potential mesenchymal progenitors in response to diverse pharmaceutical administrations in regulating bone formation.


Subject(s)
Glucocorticoids , Mesenchymal Stem Cells , Osteoporosis , Animals , Mice , Cell Differentiation/drug effects , Cell Proliferation/drug effects , Glucocorticoids/adverse effects , Glucocorticoids/pharmacology , Mesenchymal Stem Cells/metabolism , Mesenchymal Stem Cells/drug effects , Mice, Inbred C57BL , Osteoblasts/metabolism , Osteoblasts/drug effects , Osteogenesis/drug effects , Osteoporosis/chemically induced , Osteoporosis/metabolism , Osteoporosis/pathology , Teriparatide/pharmacology , Zinc Finger Protein GLI1/metabolism , Zinc Finger Protein GLI1/genetics
3.
Mol Cancer ; 22(1): 25, 2023 02 04.
Article in English | MEDLINE | ID: mdl-36739413

ABSTRACT

Current methods for the early detection and minimal residual disease (MRD) monitoring of urothelial carcinoma (UC) are invasive and/or possess suboptimal sensitivity. We developed an efficient workflow named urine tumor DNA multidimensional bioinformatic predictor (utLIFE). Using UC-specific mutations and large copy number variations, the utLIFE-UC model was developed on a bladder cancer cohort (n = 150) and validated in The Cancer Genome Atlas (TCGA) bladder cancer cohort (n = 674) and an upper tract urothelial carcinoma (UTUC) cohort (n = 22). The utLIFE-UC model could discriminate 92.8% of UCs with 96.0% specificity and was robustly validated in the BLCA_TCGA and UTUC cohorts. Furthermore, compared to cytology, utLIFE-UC improved the sensitivity of bladder cancer detection (p < 0.01). In the MRD cohort, utLIFE-UC could distinguish 100% of patients with residual disease, showing superior sensitivity compared to cytology (p < 0.01) and fluorescence in situ hybridization (FISH, p < 0.05). This study shows that utLIFE-UC can be used to detect UC with high sensitivity and specificity in patients with early-stage cancer or MRD. The utLIFE-UC is a cost-effective, rapid, high-throughput, noninvasive, and promising approach that may reduce the burden of cystoscopy and blind surgery.


Subject(s)
Carcinoma, Transitional Cell , Urinary Bladder Neoplasms , Humans , Urinary Bladder Neoplasms/diagnosis , Urinary Bladder Neoplasms/genetics , Urinary Bladder Neoplasms/pathology , Carcinoma, Transitional Cell/diagnosis , Carcinoma, Transitional Cell/genetics , Carcinoma, Transitional Cell/pathology , In Situ Hybridization, Fluorescence/methods , DNA Copy Number Variations , Neoplasm, Residual/diagnosis , Neoplasm, Residual/genetics , DNA , Sensitivity and Specificity
4.
BMC Pediatr ; 23(1): 62, 2023 02 04.
Article in English | MEDLINE | ID: mdl-36739388

ABSTRACT

PURPOSE: The 5-year survival rate of children with acute lymphoblastic leukemia (ALL) is 85-90%, with a 10-15% rate of treatment failure. Next-generation sequencing (NGS) identified recurrent mutated genes in ALL that might alter the diagnosis, classification, prognostic stratification, treatment, and response to ALL. Few studies on gene mutations in Chinese pediatric ALL have been identified. Thus, an in-depth understanding of the biological characteristics of these patients is essential. The present study aimed to characterize the spectrum and clinical features of recurrent driver gene mutations in a single-center cohort of Chinese pediatric ALL. METHODS: We enrolled 219 patients with pediatric ALL in our single center. Targeted sequencing based on NGS was used to detect gene mutations in patients. The correlation was analyzed between gene mutation and clinical features, including patient characteristics, cytogenetics, genetic subtypes, risk stratification and treatment outcomes using χ2-square test or Fisher's exact test for categorical variables. RESULTS: A total of 381 gene mutations were identified in 66 different genes in 152/219 patients. PIK3R1 mutation was more common in infants (P = 0.021). KRAS and FLT3 mutations were both more enriched in patients with hyperdiploidy (both P < 0.001). NRAS, PTPN11, FLT3, and KMT2D mutations were more common in patients who did not carry the fusion genes (all P < 0.050). PTEN mutation was significantly associated with high-risk ALL patients (P = 0.011), while NOTCH1 mutation was common in middle-risk ALL patients (P = 0.039). Patients with ETV6 or PHF6 mutations were less sensitive to steroid treatment (P = 0.033, P = 0.048, respectively). CONCLUSION: This study depicted the specific genomic landscape of Chinese pediatric ALL and revealed the relevance between mutational spectrum and clinical features of Chinese pediatric ALL, which highlights the need for molecular classification, risk stratification, and prognosis evaluation.


Subject(s)
East Asian People , Precursor Cell Lymphoblastic Leukemia-Lymphoma , Child , Infant , Humans , Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics , Mutation , Transcription Factors/genetics , Genomics , Prognosis
5.
Mol Carcinog ; 61(3): 311-321, 2022 03.
Article in English | MEDLINE | ID: mdl-34729830

ABSTRACT

The tumor mutational burden (TMB) calculated by whole-exome sequencing (WES) is a promising biomarker for the response to immune checkpoint inhibition (ICIs) in solid tumors. However, WES is not feasible in the routine clinical setting. In addition, the characteristics of the TMB in Chinese urothelial carcinoma (UC) are unclear. The aim of this study was to demonstrate the reliability of an Acornmed 808 panel and analyze the characteristics of the TMB in Chinese UC. An Acornmed 808 panel was designed and virtually validated using UC data from the cancer genome atlas (TCGA). Comprehensive analysis of sequencing and clinical data was performed to explore the characteristics of the TMB for 143 Chinese UC patients. Compared to the TMB calculated with random 808-, 500-, and 250-gene panels, the TMB calculated with the Acornmed 808 panel was closer to that calculated by WES. There were marked disparities in the mutational landscape and TMB between Chinese and TCGA UC data. The TMB was negatively associated with copy number variation (CNV). In contrast, the TMB was positive correlation with numbers of mutated DDR genes. Exposure to aristolochic acid signature was observed only in the TMB-high groups. The Acornmed 808 panel is a clinically practical method to assess the TMB. The TMB was associated with the DDR gene status and CNV counts and might be a biomarker for further stratification of UC patients. The study suggested that patients with high TMB may have a unique carcinogenic mechanism.


Subject(s)
Carcinoma, Transitional Cell , Urinary Bladder Neoplasms , Biomarkers, Tumor/genetics , Carcinoma, Transitional Cell/genetics , China/epidemiology , DNA Copy Number Variations , Female , Humans , Male , Mutation , Reproducibility of Results , Tumor Burden/genetics , Urinary Bladder Neoplasms/genetics
6.
Nano Lett ; 21(7): 3170-3176, 2021 Apr 14.
Article in English | MEDLINE | ID: mdl-33754732

ABSTRACT

Two-dimensional (2D) ferroelectric (FE) hybrid organic-inorganic perovskites (HOIPs) are promising for potential applications as miniaturized flexible ferroelectric/piezoelectric devices. Recently, several 2D HOIPs [e.g., Ruddlensden-Popper type HOIP BA2PbCl4 (BA = C6H5CH2NH3+)] were reported to possess room-temperature ferroelectricity. However, the underlying microscopic mechanisms for ferroelectricity in 2D HOIPs remain elusive. Here, by performing first-principles calculations and symmetry mode analysis, we demonstrate that there exists a cooperative coupling between A-site organic molecules and B-site inorganic Pb2+ ions that is essential to the ferroelectricity in 2D BA2PbCl4. The nonpolar ground state of the closely related compounds BA2PbBr4 and BA2PbI4 can also be explained in terms of the weakened cooperative coupling. We further predict that 2D BA2PbF4 displays in-plane ferroelectricity with a higher Curie temperature and larger electric polarization. Our work not only reveals the unusual FE mechanism in 2D HOIPs but also provides a solid theoretical basis for the rational design of 2D multifunctional materials.

7.
BMC Bioinformatics ; 22(1): 185, 2021 Apr 12.
Article in English | MEDLINE | ID: mdl-33845765

ABSTRACT

BACKGROUND: Microsatellite instability (MSI) is a common genomic alteration in colorectal cancer, endometrial carcinoma, and other solid tumors. MSI is characterized by a high degree of polymorphism in microsatellite lengths owing to the deficiency in the mismatch repair system. Based on the degree, MSI can be classified as microsatellite instability-high (MSI-H) and microsatellite stable (MSS). MSI is a predictive biomarker for immunotherapy efficacy in advanced/metastatic solid tumors, especially in colorectal cancer patients. Several computational approaches based on target panel sequencing data have been used to detect MSI; however, they are considerably affected by the sequencing depth and panel size. RESULTS: We developed MSIFinder, a python package for automatic MSI classification, using random forest classifier (RFC)-based genome sequencing, which is a machine learning technology. We included 19 MSI-H and 25 MSS samples as training sets. First, we selected 54 feature markers from the training sets, built an RFC model, and validated the classifier using a test set comprising 21 MSI-H and 379 MSS samples. With this test set, MSIFinder achieved a sensitivity (recall) of 1.0, a specificity of 0.997, an accuracy of 0.998, a positive predictive value of 0.954, an F1 score of 0.977, and an area under the curve of 0.999. To further verify the robustness and effectiveness of the model, we used a prospective cohort consisting of 18 MSI-H samples and 122 MSS samples. MSIFinder achieved a sensitivity (recall) of 1.0 and a specificity of 1.0. We discovered that MSIFinder is less affected by a low sequencing depth and can achieve a concordance of 0.993 while exhibiting a sequencing depth of 100×. Furthermore, we realized that MSIFinder is less affected by the panel size and can achieve a concordance of 0.99 when the panel size is 0.5 M (million bases). CONCLUSION: These results indicate that MSIFinder is a robust and effective MSI classification tool that can provide reliable MSI detection for scientific and clinical purposes.


Subject(s)
Colorectal Neoplasms , Microsatellite Instability , Colorectal Neoplasms/genetics , DNA Mismatch Repair , Humans , Microsatellite Repeats , Prospective Studies
8.
Cancer Sci ; 112(11): 4758-4771, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34449929

ABSTRACT

Small bowel adenocarcinoma (SBA) is a rare malignancy with a poor prognosis and limited treatment options. Despite prior studies, molecular characterization of this disease is not well defined, and little is known regarding Chinese SBA patients. In this study, we conducted multigene next-generation sequencing and 16S ribosomal RNA gene sequencing on samples from 76 Chinese patients with surgically resected primary SBA. Compared with colorectal cancer and Western SBA cohorts, a distinctive genomic profile was revealed in Chinese SBA cohorts. According to the levels of clinical actionability to targetable alterations stratified by OncoKB system, 75% of patients harbored targetable alterations, of which ERBB2, BRCA1/2, and C-KIT mutations were the most common targets of highest-level actionable alterations. In DNA mismatch repair-proficient (pMMR) patients, significant associations between high tumor mutational burden and specific genetic alterations were identified. Moreover, KRAS mutations/TP53 wild-type/nondisruptive mutations (KRASmut /TP53wt/non-dis ) were independently associated with an inferior recurrence-free survival (hazard ratio [HR] = 4.21, 95% confidence interval [CI] = 1.94-9.14, P < .001). The bacterial profile revealed Proteobacteia, Actinobacteria, Firmicutes, Bacteroidetes, Fusobacteria, and Cyanobacteria were the most common phyla in SBA. Furthermore, patients were clustered into three subgroups based on the relative abundance of bacterial phyla, and the distributions of the subgroups were significantly associated with the risk of recurrence stratified by TP53 and KRAS mutations. In conclusion, these findings provided a comprehensive molecular basis for understanding SBA, which will be of great significance in improving the treatment strategies and clinical management of this population.


Subject(s)
Adenocarcinoma/genetics , High-Throughput Nucleotide Sequencing , Intestinal Neoplasms/genetics , Intestine, Small , RNA, Ribosomal, 16S/genetics , Adenocarcinoma/microbiology , Adenocarcinoma/mortality , Adult , Aged , Aged, 80 and over , China , DNA Mismatch Repair , Disease-Free Survival , Duodenal Neoplasms/genetics , Duodenal Neoplasms/microbiology , Duodenal Neoplasms/mortality , Female , Gastrointestinal Microbiome , Genes, BRCA1 , Genes, BRCA2 , Genes, p53 , Genes, ras , Humans , Ileal Neoplasms/genetics , Ileal Neoplasms/microbiology , Ileal Neoplasms/mortality , Intestinal Neoplasms/microbiology , Intestinal Neoplasms/mortality , Intestine, Small/microbiology , Jejunal Neoplasms/genetics , Jejunal Neoplasms/microbiology , Jejunal Neoplasms/mortality , Male , Middle Aged , Prognosis , Proto-Oncogene Proteins c-kit/genetics , Receptor, ErbB-2/genetics
9.
Oncologist ; 26(8): e1395-e1405, 2021 08.
Article in English | MEDLINE | ID: mdl-34050578

ABSTRACT

BACKGROUND: Different genomic characterization in urothelial carcinoma (UC) by site of origin may imply contrasting therapeutic opportunities and pathogenetic mechanisms. The aim of this study was to investigate whether differences between upper tract UC (UTUC) and UC of the bladder (UCB) result from intrinsic biological diversity. MATERIALS AND METHODS: We prospectively sequenced 118 tumors and matched blood DNA from Chinese patients with UC using next-generation sequencing techniques, including 45 UTUC and 73 UCB. Two hundred twenty-six patients with UTUC and 350 patients with UCB for The Cancer Genome Atlas were acquired from the cbioportal. RESULTS: There were marked disparities in the mutational landscape for UC according to race and site of origin. Signature 22 for exposure to aristolochic acid was only observed in the UTUC cohort. Conversely, signature 6 for defective DNA mismatch repair only existed in the UCB cohort. Compared with UCB, UTUC had higher clonal and subclonal mutation numbers. TP53, PIK3CA, and FGFR3 mutations may be the driver genes for UTUC, whereas for UCB, the driver gene may be BRCA1. Patients with UTUC had lower PD-L1 than those with UCB. There was no significant difference in the number of DDR mutations, copy number variation counts, and tumor mutational burden between UTUC and UCB. CONCLUSION: UTUC and UCB exhibit significant differences in the prevalence of genomic landscape and carcinogenesis. Consequently, molecular subtypes differ according to location, and these results may imply the site-specific management of patients with urothelial carcinoma. Mutational signature may be used as a screening tool to assist clinical differential diagnosis between UTUC and UCB. IMPLICATIONS FOR PRACTICE: This study's findings lay the foundation for a deeper understanding of distinct molecular mechanisms and similar treatment opportunities between upper tract urothelial carcinoma (UTUC) and urothelial carcinoma of the bladder (UCB) and had important implications for the site-specific management of patients with urothelial carcinoma. A comprehensive understanding of the biology of UTUC and UCB is needed to identify new drug targets in order to improve clinical outcomes.


Subject(s)
Carcinoma, Transitional Cell , Urinary Bladder Neoplasms , Carcinoma, Transitional Cell/genetics , DNA Copy Number Variations , Genomics , Humans , Urinary Bladder Neoplasms/genetics
10.
J Chem Phys ; 154(11): 114103, 2021 Mar 21.
Article in English | MEDLINE | ID: mdl-33752342

ABSTRACT

We have developed a software package, namely, PASP (Property Analysis and Simulation Package for materials), to analyze the structural, electronic, magnetic, and thermodynamic properties of complex condensed matter systems. Our package integrates several functionalities including symmetry analysis, global structure searching methods, effective Hamiltonian methods, and Monte Carlo simulation methods. In conjunction with first-principles calculations, PASP has been successfully applied to diverse physical systems. In this paper, we give a brief introduction to its main features and underlying theoretical formulism. Some typical applications are provided to demonstrate the usefulness, high efficiency, and reliability of PASP. We expect that further developments will make PASP a general-purpose tool for material simulation and property calculation of condensed matters.

11.
Molecules ; 26(4)2021 Feb 04.
Article in English | MEDLINE | ID: mdl-33557181

ABSTRACT

The effective spin Hamiltonian method has drawn considerable attention for its power to explain and predict magnetic properties in various intriguing materials. In this review, we summarize different types of interactions between spins (hereafter, spin interactions, for short) that may be used in effective spin Hamiltonians as well as the various methods of computing the interaction parameters. A detailed discussion about the merits and possible pitfalls of each technique of computing interaction parameters is provided.


Subject(s)
Magnetic Phenomena , Magnets , Models, Theoretical
12.
Br J Haematol ; 190(2): 274-283, 2020 07.
Article in English | MEDLINE | ID: mdl-32103499

ABSTRACT

About 25% of patients with newly diagnosed acute myeloid leukaemia (AML) have normal cytogenetics and no nucleophosmin 1 (NPM1) mutation or Fms-like tyrosine kinase 3 internal tandem duplication (FLT3-ITD). The prognosis and best therapy for these patients is controversial. We evaluated 158 newly diagnosed adults with this genotype who achieved histological complete remission within two cycles of induction therapy and were assigned to two post-remission strategies with and without an allotransplant. Targeted regional sequencing at diagnosis was performed and data were used to estimate their prognosis, including relapse and survival. In multivariable analyses, having wild-type or mono-allelic mutated CCAAT/enhancer-binding protein alpha (CEBPA) [hazard ratio (HR) 2·39, 95% confidence interval (CI) 1·08-5·30; P = 0·032), mutated NRAS (HR 2·67, 95% CI 1·36-5·25; P = 0·004), mutated colony-stimulating factor 3 receptor (CSF3R) (HR 2·85, 95% CI 1·12-7·27; P = 0·028) and a positive measurable residual disease (MRD)-test after the second consolidation cycle (HR 2·88, 95% CI 1·32-6·30; P = 0·008) were independently correlated with higher cumulative incidence of relapse (CIR). These variables were also significantly associated with worse survival (HR 3·02, 95% CI 1·17-7·78, P = 0·022; HR 3·62, 95% CI 1·51-8·68, P = 0·004; HR 3·14, 95% CI 1·06-9·31, P = 0·039; HR 4·03, 95% CI 1·64-9·89, P = 0·002; respectively). Patients with ≥1 of these adverse-risk variables benefitted from a transplant, whereas the others did not. In conclusion, we identified variables associated with CIR and survival in patients with AML and normal cytogenetics without a NPM1 mutation or FLT3-ITD.


Subject(s)
Cytogenetic Analysis/methods , Leukemia, Myeloid, Acute/genetics , Adolescent , Adult , Aged , Female , Humans , Leukemia, Myeloid, Acute/pathology , Male , Middle Aged , Mutation , Nucleophosmin , Tandem Repeat Sequences , Young Adult
13.
Cancer Sci ; 110(10): 3382-3390, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31444835

ABSTRACT

Anaplastic lymphoma kinase (ALK) fusions have been recognized as a therapeutic target in non-small cell lung cancer (NSCLC). However, molecular signatures and clinical characteristics of the Chinese population with ALK-rearranged NSCLC are not well elucidated. In the present study, we carried out targeted next-generation sequencing on tissue and plasma ctDNA samples in 1688 patients with NSCLC. Overall, ALK fusions were detected in 70 patients (4.1%), and the frequencies of ALK fusions detected in tissue and plasma samples were 5.1% and 3.3%, respectively. Additionally, the prevalence of breakpoint locations for EML4-ALK fusions in ctDNA was significantly correlated with that in tumor tissues (R2  = .91, P = .045). According to age, the incidence rates of ALK fusions among young (age <45 years), middle-aged (between 45 and 70 years) and elderly (>70 years) patients were significantly different (P < .001). In 70 ALK-rearranged cases, coexistence of epidermal growth factor receptor (EGFR) alterations and ALK fusions was detected in 12 cases (17.1%) and EGFR mutations tended to coexist with non-EML4-ALK rearrangements. Notably, novel ALK fusion partners, including TRIM66, SWAP70, WNK3, ERC1, TCF12 and FBN1 were identified in the present study. Among EML4-ALK fusion variants, patients with variant V1 were younger than patients with variant V3 (P = .023), and TP53 mutations were more frequently concurrent with variant V3 compared with variant V1 (P = .009). In conclusion, these findings provide new insights into the molecular-clinical profiles of patients with ALK-rearranged NSCLC that may improve the treatment strategy of this population.


Subject(s)
Anaplastic Lymphoma Kinase/genetics , Asian People/genetics , Carcinoma, Non-Small-Cell Lung/genetics , Gene Rearrangement , High-Throughput Nucleotide Sequencing/methods , Lung Neoplasms/genetics , Adult , Age Distribution , Aged , Aged, 80 and over , Female , Gene Frequency , Humans , Male , Middle Aged , Oncogene Proteins, Fusion/genetics , Prospective Studies , Sequence Analysis, DNA , Translocation, Genetic
14.
Proc Natl Acad Sci U S A ; 113(15): E2152-61, 2016 Apr 12.
Article in English | MEDLINE | ID: mdl-27036007

ABSTRACT

Notch controls skeletogenesis, but its role in the remodeling of adult bone remains conflicting. In mature mice, the skeleton can become osteopenic or osteosclerotic depending on the time point at which Notch is activated or inactivated. Using adult EGFP reporter mice, we find that Notch expression is localized to osteocytes embedded within bone matrix. Conditional activation of Notch signaling in osteocytes triggers profound bone formation, mainly due to increased mineralization, which rescues both age-associated and ovariectomy-induced bone loss and promotes bone healing following osteotomy. In parallel, mice rendered haploinsufficient in γ-secretase presenilin-1 (Psen1), which inhibits downstream Notch activation, display almost-absent terminal osteoblast differentiation. Consistent with this finding, pharmacologic or genetic disruption of Notch or its ligand Jagged1 inhibits mineralization. We suggest that stimulation of Notch signaling in osteocytes initiates a profound, therapeutically relevant, anabolic response.


Subject(s)
Bone and Bones/metabolism , Receptors, Notch/metabolism , Animals , Bone Marrow Cells/cytology , Bone and Bones/diagnostic imaging , Calcification, Physiologic/physiology , Cells, Cultured , Female , Green Fluorescent Proteins/genetics , Jagged-1 Protein/genetics , Male , Mice, Transgenic , Osteoblasts/cytology , Osteoblasts/metabolism , Osteogenesis/physiology , Presenilin-1/genetics , Stromal Cells/cytology , Stromal Cells/metabolism , X-Ray Microtomography
15.
Biomed Environ Sci ; 31(10): 740-748, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30423275

ABSTRACT

OBJECTIVE: This study is to examine the influence of familiarity on energy intake, eating behavior, and concentration of the plasma gut hormones in lean and overweight young male subjects. METHODS: Twenty-eight lean and twenty-eight overweight participants were recruited. Their food consumption was documented and analyzed when they had a test meal while they were paired with friends or strangers at the same weight stature. Their eating behavior was recorded with cameras hidden in the carton, and postprandial plasma gut hormone concentration were measured. RESULTS: Compared with overweight strangers (OS), overweight friends (OF) had increased food consumption, prolonged and decreased number of chews per 10 g food. Compared with OS, postprandial plasma concentration of cholecystokinin-8 was significantly lower in OF group at 30, 60, and 90 min, whereas the concentration of glucagon-like peptide 1 was significantly lower at 60 and 90 min. Plasma ghrelin concentration was significantly higher in the OF group than that in the OS group at 90 and 120 min. No significant differences in gut hormone concentration were observed between lean strangers (LS) and lean friends (LF) groups at all time points. CONCLUSION: Familiarity plays an important role in increasing energy intake and in changing of postprandial gut hormone concentration in overweight individuals.


Subject(s)
Eating , Energy Intake , Gastrointestinal Hormones/blood , Overweight/classification , Recognition, Psychology , China , Humans , Interpersonal Relations , Male , Young Adult
16.
Hum Genomics ; 9: 2, 2015 Feb 08.
Article in English | MEDLINE | ID: mdl-25757876

ABSTRACT

Breast cancer is the most common malignancy in women and the leading cause of cancer deaths in women worldwide. Breast cancers are heterogenous and exist in many different subtypes (luminal A, luminal B, triple negative, and human epidermal growth factor receptor 2 (HER2) overexpressing), and each subtype displays distinct characteristics, responses to treatment, and patient outcomes. In addition to varying immunohistochemical properties, each subtype contains a distinct gene mutation profile which has yet to be fully defined. Patient treatment is currently guided by hormone receptor status and HER2 expression, but accumulating evidence suggests that genetic mutations also influence drug responses and patient survival. Thus, identifying the unique gene mutation pattern in each breast cancer subtype will further improve personalized treatment and outcomes for breast cancer patients. In this study, we used the Ion Personal Genome Machine (PGM) and Ion Torrent AmpliSeq Cancer Panel to sequence 737 mutational hotspot regions from 45 cancer-related genes to identify genetic mutations in 80 breast cancer samples of various subtypes from Chinese patients. Analysis revealed frequent missense and combination mutations in PIK3CA and TP53, infrequent mutations in PTEN, and uncommon combination mutations in luminal-type cancers in other genes including BRAF, GNAS, IDH1, and KRAS. This study demonstrates the feasibility of using Ion Torrent sequencing technology to reliably detect gene mutations in a clinical setting in order to guide personalized drug treatments or combination therapies to ultimately target individual, breast cancer-specific mutations.


Subject(s)
Breast Neoplasms/genetics , High-Throughput Nucleotide Sequencing/methods , Mutation/genetics , Receptor, ErbB-2/genetics , Adult , Aged , Breast Neoplasms/pathology , DNA Mutational Analysis , Female , Humans , Middle Aged , Neoplasm Proteins/genetics , Precision Medicine
17.
J Hum Genet ; 60(10): 589-96, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26134512

ABSTRACT

Colorectal cancer (CRC) is widespread with significant mortality. Both inherited and sporadic mutations in various signaling pathways influence the development and progression of the cancer. Identifying genetic mutations in CRC is important for optimal patient treatment and many approaches currently exist to uncover these mutations, including next-generation sequencing (NGS) and commercially available kits. In the present study, we used a semiconductor-based targeted DNA-sequencing approach to sequence and identify genetic mutations in 91 human rectal cancer samples. Analysis revealed frequent mutations in KRAS (58.2%), TP53 (28.6%), APC (16.5%), FBXW7 (9.9%) and PIK3CA (9.9%), and additional mutations in BRAF, CTNNB1, ERBB2 and SMAD4 were also detected at lesser frequencies. Thirty-eight samples (41.8%) also contained two or more mutations, with common combination mutations occurring between KRAS and TP53 (42.1%), and KRAS and APC (31.6%). DNA sequencing for individual cancers is of clinical importance for targeted drug therapy and the advantages of such targeted gene sequencing over other NGS platforms or commercially available kits in sensitivity, cost and time effectiveness may aid clinicians in treating CRC patients in the near future.


Subject(s)
High-Throughput Nucleotide Sequencing , Neoplasm Proteins/genetics , Rectal Neoplasms/genetics , Adult , Aged , Aged, 80 and over , Female , Humans , Male , Middle Aged , Mutation
18.
J Clin Nurs ; 23(1-2): 45-53, 2014 Jan.
Article in English | MEDLINE | ID: mdl-23387397

ABSTRACT

AIMS AND OBJECTIVES: To translate the Edinburgh Feeding Evaluation in Dementia scale (EdFED) into simplified Chinese and to comprehensively evaluate its reliability and validity. BACKGROUND: The EdFED, the only validated instrument at present for assessing feeding difficulty in older people with dementia, is available in the original English and traditional Chinese versions, but not available in simplified Chinese. The traditional Chinese version may not be applicable in Mainland China because of linguistic and cultural differences. DESIGN: Survey. METHODS: The scale was translated into simplified Chinese by the cross-culture translation method, and 102 participants with dementia were assessed. Data were collected by comprehensive methods and analysed by correlation, Mokken scaling and exploratory factor analysis. RESULTS: Reliability and validity were demonstrated for the scale, and a strong and reliable Mokken scale was formed by six items. A three-factor structure was illustrated by exploratory factor analysis, and construct validity was further demonstrated by good convergent and discriminant validity. CONCLUSIONS: The simplified Chinese version shows good reliability and validity and can be applicable to measure feeding difficulty in people with dementia in Mainland China and other Chinese cultural groups. More work is required on Mokken scaling, and a confirmatory factor analysis is needed to confirm the three-factor structure. RELEVANCE TO CLINICAL PRACTICE: The validation of Ch-EdFED has provided a validated instrument for measuring feeding difficulty in people with dementia in Chinese culture; thus, early recognition of feeding difficulty in older people with dementia can be achieved and proper interventions could be designed. Moreover, with the availability of the three different validated versions of the EdFED, research into cross-cultural comparisons could be conducted.


Subject(s)
Dementia/physiopathology , Feeding Methods , China , Cross-Cultural Comparison , Humans
19.
ACS Appl Mater Interfaces ; 16(12): 14421-14433, 2024 Mar 27.
Article in English | MEDLINE | ID: mdl-38497587

ABSTRACT

Injectable antibacterial and osteoinductive hydrogels have received considerable attention for promoting bone regeneration owing to their versatile functionalities. However, a current hydrogel with antibacterial, osteoinductive, and antioxidant properties by a facile method for periodontitis treatment is still missing. To overcome this issue, we designed an injectable hydrogel system (GPM) composed of gelatin, Ti3C2Tx MXene nanosheets, and poly-l-lysine using a simple enzymatic cross-linking technique. Physicochemical characterization demonstrated that the GPM hydrogel matrix exhibited excellent stability, moderate tissue adhesion ability, and good mechanical behavior. The GPM hydrogels significantly inhibited the growth of Porphyromonas gingivalis, scavenged reactive oxygen species, attenuated inflammatory responses, and enhanced bone tissue regeneration. Intriguingly, the arrangement of the junctional epithelium, alveolar bone volume, and alveolar bone height in the GPM-treated periodontal disease group recovered to that of the healthy group. Therefore, our injectable hydrogel system with versatile functions may serve as an excellent tissue scaffold for the treatment of periodontitis.


Subject(s)
Periodontitis , Humans , Nanogels , Reactive Oxygen Species , Periodontitis/drug therapy , Hydrogels/pharmacology , Hydrogels/chemistry , Anti-Bacterial Agents/pharmacology
20.
Mol Oncol ; 18(4): 939-955, 2024 Apr.
Article in English | MEDLINE | ID: mdl-37727135

ABSTRACT

Osteosarcoma (OS) is a rare but aggressive malignancy. Despite previous reports, molecular characterization of this disease is not well understood, and little is known regarding OS in Chinese patients. Herein, we analyzed the genomic signatures of 73 Chinese OS cases. TP53, NCOR1, LRP1B, ATRX, RB1, and TFE3 were the most frequently mutated gene in our OS cohort. In addition, the genomic analysis of Western OS patients was performed. Notably, there were remarkable disparities in mutational landscape, base substitution pattern, and tumor mutational burden between the Chinese and Western OS cohorts. Specific molecular mechanisms, including DNA damage repair (DDR) gene mutations, copy number variation (CNV) presence, aneuploidy, and intratumoral heterogeneity, were associated with disease progression. Additionally, 30.1% of OS patients carried clinically actionable alterations, which were mainly enriched in PI3K, MAPK, DDR, and RTK signaling pathways. A specific molecular subtype incorporating DDR alterations and CNVs was significantly correlated with distant metastasis-free survival and event-free survival, and this correlation was observed in all subgroups with different characteristics. These findings comprehensively elucidated the genomic profile and revealed novel prognostic factors in OS, which would contribute to understanding this disease and promoting precision medicine of this population.


Subject(s)
Bone Neoplasms , Osteosarcoma , Humans , DNA Copy Number Variations/genetics , Osteosarcoma/genetics , Genomics , Risk Factors , Mutation/genetics , Bone Neoplasms/genetics
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