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1.
J Gene Med ; 26(4): e3684, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38618694

ABSTRACT

BACKGROUND: Colon cancer is one of the most common digestive tract malignancies. Although immunotherapy has brought new hope to colon cancer patients, there is still a large proportion of patients who do not benefit from immunotherapy. Studies have shown that neutrophils can interact with immune cells and immune factors to affect the prognosis of patients. METHODS: We first determined the infiltration level of neutrophils in tumors using the CIBERSORT algorithm and identified key genes in the final risk model by Spearman correlation analysis and subsequent Cox analysis. The risk score of each patient was obtained by multiplying the Cox regression coefficient and the gene expression level, and patients were divided into two groups based on the median of risk score. Differences in overall survival (OS) and progression-free survival (PFS) were assessed by Kaplan-Meier survival analysis, and model accuracy was validated in independent dataset. Differences in immune infiltration and immunotherapy were evaluated by immunoassay. Finally, immunohistochemistry and western blotting were performed to verify the expression of the three genes in the colon normal and tumor tissues. RESULTS: We established and validated a risk scoring model based on neutrophil-related genes in two independent datasets, The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) database, with SLC11A1 and SLC2A3 as risk factors and MMP3 as a protective factor. A new nomogram was constructed and validated by combining clinical characteristics and the risk score model to better predict patients OS and PFS. Immune analysis showed that patients in the high-risk group had immune cell infiltration level, immune checkpoint level and tumor mutational burden, and were more likely to benefit from immunotherapy. CONCLUSIONS: The low-risk group showed better OS and PFS than the high-risk group in the neutrophil-related gene-based risk model. Patients in the high-risk group presented higher immune infiltration levels and tumor mutational burden and thus may be more responsive to immunotherapy.


Subject(s)
Colonic Neoplasms , Neutrophils , Humans , Colonic Neoplasms/genetics , Colonic Neoplasms/therapy , Risk Factors , Algorithms , Immunotherapy
2.
Mikrochim Acta ; 191(5): 265, 2024 04 16.
Article in English | MEDLINE | ID: mdl-38625451

ABSTRACT

Sleep deprivation (SD) is highly prevalent in the modern technological world. Emerging evidence shows that sleep deprivation is associated with oxidative stress. At the organelle level, the Golgi apparatus actively participates in the stress response. In this study, to determine whether SD and Golgi apparatus stress are correlated, we rationally designed and fabricated a novel Golgi apparatus-targeted ratiometric nanoprobe called Golgi dots for O2·- detection. This probe exhibits high sensitivity and selectivity in cells and brain slices of sleep-deprived mice. Golgi dots can be readily synthesized by coprecipitation of Golgi-F127, an amphiphilic polymer F127 modified with a Golgi apparatus targeting moiety, caffeic acid (CA), the responsive unit for O2·-, and red emissive carbon nanodots (CDs), which act as the reference signal. The fluorescence emission spectrum of the developed nanoprobe showed an intense peak at 674 nm, accompanied by a shoulder peak at 485 nm. As O2·- was gradually added, the fluorescence at 485 nm continuously increased; in contrast, the emission intensity at 674 nm assigned to the CDs remained constant, resulting in the ratiometric sensing of O2·-. The present ratiometric nanoprobe showed high selectivity for O2·- monitoring due to the specific recognition of O2·- by CA. Moreover, the Golgi dots exhibited good linearity with respect to the O2·- concentration within 5 to 40 µM, and the limit of detection (LOD) was ~ 0.13 µM. Additionally, the Golgi dots showed low cytotoxicity and an ability to target the Golgi apparatus. Inspired by these excellent properties, we then applied the Golgi dots to successfully monitor exogenous and endogenous O2·- levels within the Golgi apparatus. Importantly, with the help of Golgi dots, we determined that SD substantially elevated O2·- levels in the brain.


Subject(s)
Brain , Caffeic Acids , Polyethylenes , Polypropylenes , Sleep Deprivation , Animals , Mice , Golgi Apparatus , Dietary Supplements
3.
Nano Lett ; 23(19): 8842-8849, 2023 Oct 11.
Article in English | MEDLINE | ID: mdl-37729549

ABSTRACT

Wear of sliding contacts causes device failure and energy costs; however, the microscopic principle in activating wear of the interfaces under stress is still open. Here, the typical nanoscale wear, in the case of silicon against silicon dioxide, is investigated by single-asperity wear experiments and density functional theory calculations. The tests demonstrate that the wear rate of silicon in ambient air increases exponentially with stress and does not obey classical Archard's law. Series calculations of atomistic wear reactions generally reveal that the mechanical stress linearly drives the electron transfer to activate the sequential formation and rupture of interfacial bonds in the atomistic wear process. The atomistic wear model is thus resolved by combining the present stress-driven electron transfer model with Maxwell-Boltzmann statistics. This work may advance electronic insights into the law of nanoscale wear for understanding and controlling wear and manufacturing of material surfaces.

4.
Environ Monit Assess ; 196(2): 206, 2024 Jan 27.
Article in English | MEDLINE | ID: mdl-38279061

ABSTRACT

Evaluating the ecosystem health of riparian zones is helpful for decision-makers to formulate appropriate management measures. However, there are few methods for such evaluation which account for both the human requirements and ecological aspects of riparian zones. To address this, we created a Pressure-State(Vigor-Organization-Resilience)-Response framework for evaluating the ecosystem health of the riparian zone of the Yangtze River in Jiangsu Province, a region experiencing intense land use changes. Evaluation indicators, including land use change and ecosystem services, were selected. The comprehensive index method was used to calculate the evaluation indicators of ecosystem health, namely pressure, state, and response, and the comprehensive evaluation indicator itself. Using the cold and hot spot analysis, we also analyzed the spatial heterogeneity of ecosystem health in the riparian zone, constructed an ecological management pattern, and proposed corresponding management and protection measures. The results show that (1) from 2010 to 2020, construction land in the study area increased by more than 20%, and all studied land types underwent some degree of conversion to construction land, with cultivated land and water bodies being the main focus of conversion. (2) In 2020, the average ecosystem health in the riparian zone was normal, with a spatial distribution characterized by "high dispersion and low clustering"; and (3) according to the results of the ecosystem health evaluation and cold and hot spot analysis, key areas for stronger ecological protection were identified and, based on this, a number of management recommendations were proposed.


Subject(s)
Ecosystem , Rivers , Humans , Environmental Monitoring , China , Conservation of Natural Resources/methods
5.
Inflamm Res ; 72(12): 2089-2109, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37878024

ABSTRACT

OBJECTIVE: The pathogenesis, diagnosis, and treatment of Sjögren's syndrome (SS) face many challenges, and there is an urgent need to develop new technologies to improve our understanding of SS. METHODS: By searching the literature published domestically and internationally in the past 20 years, this artical reviewed the research of various omics techniques in SS. RESULTS: Omics technology provided valuable insights into the pathogenesis, early diagnosis, condition and efficacy evaluation of SS. It is helpful to reveal the pathogenesis of the disease and explore new treatment schemes, which will open a new era for the study of SS. CONCLUSION: At present, omics research has made some gratifying achievements, but there are still many uncertainties. Therefore, in the future, we should improve research techniques, standardize the collection of samples, and adopt a combination of multi-omics techniques to jointly study the pathogenesis of SS and provide new schemes for its treatment.


Subject(s)
Multiomics , Sjogren's Syndrome , Humans , Sjogren's Syndrome/genetics , Sjogren's Syndrome/diagnosis
6.
BMC Psychiatry ; 23(1): 156, 2023 03 10.
Article in English | MEDLINE | ID: mdl-36899383

ABSTRACT

BACKGROUND: To determine the association between sleep disorders and Triglyceride glucose index. METHODS: A cross-sectional analysis of the 2005 to 2008 National Health and Nutrition Examination Survey (NHANES) was performed. The 2005 to 2008 NHANES national household survey for adults ≥ 20 years was examined for the sleep disorders.TyG index: ln [triglyceride (mg/ dL) × fasting blood glucose (mg/dL)/2].Multivariable logistic and linear regression models were used to explore the association between the TyG index and sleep disorders. RESULTS: A total of 4,029 patients were included. Higher TyG index is significantly associated with elevated sleep disorders in U.S. adults. TyG was moderately correlated with HOMA-IR (Spearman r = 0.51). TyG was associated with higher odds of sleep disorders(adjusted OR [aOR],1.896; 95% CI, 1.260 2.854), Sleep apnea (aOR, 1.559; 95% CI, 0.660 3.683), Insomnia(aOR, 1.914;95% CI, 0.531 6.896), and Restless legs (aOR, 7.759; 95% CI,1.446 41.634). CONCLUSIONS: In this study, our result shown that population with higher TyG index are significantly more likely to have sleep disorders in U.S. adults.


Subject(s)
Glucose , Insulin Resistance , Adult , Humans , Blood Glucose , Nutrition Surveys , Triglycerides , Cross-Sectional Studies , Biomarkers , Risk Factors
7.
Med Sci Monit ; 29: e940948, 2023 Sep 18.
Article in English | MEDLINE | ID: mdl-37721931

ABSTRACT

BACKGROUND The aim of this study was to analyze the correlation and the accuracy of lower-extremity torsion deformities measured by physical examination, CT scan, and three-dimensional gait analysis in children with CP. MATERIAL AND METHODS The study group included 72 children with CP with lower-extremity torsion deformities. All subjects were assessed by: 1. physical examination: maximum internal rotation (MIR), maximum external rotation (MER) for hip joint torsion, and transmalleolar axis (TMA) for tibial torsion; 2. CT scanning: femoral anteversion (FAV) and tibial torsion (TT); 3. three-dimensional gait analysis kinematic parameters: single-support phase of femoral rotation, double-support phase of femoral rotation, swing phase of femoral rotation and single-support phase of tibial rotation, double-support phase of tibial rotation, and swing phase of tibial rotation. Statistical analysis was performed using the Pearson correlation test. A significance level of P<0.05 was set. RESULTS In femurs, MIR and MER were correlated with FAV, and the correlation of MER was higher, while physical examination and FAV were not correlated with any kinematic data in gait analysis. In tibias, there was no correlation between TMA and TT, but both TMA and TT were correlated with the gait analysis kinematic data, and the correlation of TT was higher. TMA was more correlated with tibial rotation during swing phase, while TT was more correlated with tibial rotation in single-support phase. CONCLUSIONS Three-dimensional gait analysis can analyze the tibial rotation of children with cerebral palsy, which is highly correlated with CT and physical examination. However, femoral rotation was not associated with CT and physical examination.


Subject(s)
Cerebral Palsy , Gait Analysis , Child , Humans , Cerebral Palsy/diagnostic imaging , Physical Examination , Tomography, X-Ray Computed , Lower Extremity/diagnostic imaging
8.
Zhongguo Yi Xue Ke Xue Yuan Xue Bao ; 45(2): 213-220, 2023 Apr.
Article in Zh | MEDLINE | ID: mdl-37157067

ABSTRACT

Objective To investigate the effect of systematic graded rewarming pattern on all-cause mortality of hypothermic trauma patients in different time periods. Methods A prospective case-control study was carried out for 236 hypothermic trauma patients with modified trauma score<12 in the Emergency Department of the Second Affiliated Hospital of Wenzhou Medical University from January 2020 to December 2021.The patients were randomly assigned into a systematic graded rewarming group (n=118) and a traditional rewarming group (n=118).The main outcome event was all-cause death within 15 days after trauma,and the secondary outcome event was all-cause death within 3,7,and 30 days after trauma. Results Overall,13.98%(33/236) and 14.83%(35/236) of the patients died within 15 and 30 days after trauma,respectively,and the median survival time of all dead patients was 6 (4,10) days.The systematic graded rewarming group had higher temperature after rewarming for 2 h (P=0.001) and larger temperature change after rewarming intervention (P=0.047) than the traditional rewarming group.The all-cause mortality within 15 days (27.3%vs.72.7%,P=0.005) and 30 days (25.7%vs.74.3%,P=0.002) in the systematic graded rewarming group was lower than that in the traditional rewarming group.Kaplan-Meier analysis showed that the survival time of the patients in the systematic graded rewarming group was longer than that in the traditional rewarming group (P=0.003).Multivariate cox regression analysis indicated that systematic graded rewarming was a strong protective factor for survival time after trauma (HR=0.450, P=0.042).Further Logistic regression analysis for the occurrence of all-cause death in each time period showed that the OR of systematic graded rewarming pattern to all-cause death within 15 days and 30 days after trauma were 0.289 and 0.286,respectively,after adjusting the covariates(P=0.008,P=0.005).The temperature after rewarming for 2 h had a negative correlation with all-cause mortality within 30 days after trauma (OR=0.670, P=0.049). Conclusions Systematic graded rewarming is a protective factor for the survival time of patients with traumatic hypothermia and an independent factor affecting the risk of all-cause death within 15 days and 30 days after trauma.The temperature after rewarming for 2 h is expected to be an independent predictor of all-cause mortality of 30 days after trauma in the patients with hypothermia.The systematic graded rewarming pattern could reduce the mortality of hypothermic trauma patients.


Subject(s)
Hypothermia , Humans , Rewarming , Case-Control Studies
9.
Proc Natl Acad Sci U S A ; 116(31): 15560-15569, 2019 07 30.
Article in English | MEDLINE | ID: mdl-31300538

ABSTRACT

The roles of cellular orientation during trabecular and ventricular wall morphogenesis are unknown, and so are the underlying mechanisms that regulate cellular orientation. Myocardial-specific Numb and Numblike double-knockout (MDKO) hearts display a variety of defects, including in cellular orientation, patterns of mitotic spindle orientation, trabeculation, and ventricular compaction. Furthermore, Numb- and Numblike-null cardiomyocytes exhibit cellular behaviors distinct from those of control cells during trabecular morphogenesis based on single-cell lineage tracing. We investigated how Numb regulates cellular orientation and behaviors and determined that N-cadherin levels and membrane localization are reduced in MDKO hearts. To determine how Numb regulates N-cadherin membrane localization, we generated an mCherry:Numb knockin line and found that Numb localized to diverse endocytic organelles but mainly to the recycling endosome. Consistent with this localization, cardiomyocytes in MDKO did not display defects in N-cadherin internalization but rather in postendocytic recycling to the plasma membrane. Furthermore, N-cadherin overexpression via a mosaic model partially rescued the defects in cellular orientation and trabeculation of MDKO hearts. Our study unravels a phenomenon that cardiomyocytes display spatiotemporal cellular orientation during ventricular wall morphogenesis, and its disruption leads to abnormal trabecular and ventricular wall morphogenesis. Furthermore, we established a mechanism by which Numb modulates cellular orientation and consequently trabecular and ventricular wall morphogenesis by regulating N-cadherin recycling to the plasma membrane.


Subject(s)
Cadherins/metabolism , Heart Ventricles/embryology , Intracellular Signaling Peptides and Proteins/metabolism , Membrane Proteins/metabolism , Myocytes, Cardiac/metabolism , Nerve Tissue Proteins/metabolism , Organogenesis , Animals , Cadherins/genetics , Intracellular Signaling Peptides and Proteins/genetics , Membrane Proteins/genetics , Mice , Mice, Knockout , Myocytes, Cardiac/cytology , Nerve Tissue Proteins/genetics
10.
Int J Hyperthermia ; 38(1): 900-906, 2021.
Article in English | MEDLINE | ID: mdl-34148500

ABSTRACT

OBJECTIVE: Local thermal ablation, a minimally invasive technique, has been widely used in clinical treatment of lung cancer. This study aimed to discuss the clinical efficacy of systemic chemotherapy combined with radiofrequency ablation (RFA) versus systemic chemotherapy combined with microwave ablation (MWA) in treating lung cancer. METHODS: A retrospective analysis involving 124 lung cancer patients, who received RFA (n = 68) and MWA (n = 56) combined with systemic chemotherapy in Cangzhou People's Hospital from August 2017 to December 2019, was conducted. Before comparative analysis for therapeutic efficacy, the two groups of patients were matched with propensity score matching method at a ratio of 1:1. Indicators including progression-free survival (PFS), overall survival (OS), short-term efficacy, tumor marker level, local tumor control rate, and postoperative complications were comparatively analyzed. RESULTS: There was no statistical difference in disease control rate and objective response rate (90.6% and 78.1% vs 93.8% and 84.4%) between RFA group and MWA group. The incidence of complications was 12.5% in RFA group and 18.8% in MWA group with no statistically significant difference. In addition, the local tumor control rate in MWA group (90.6%) was significantly higher than that in RFA group (78.1%). Regarding survival, a statistically significant difference was observed in median PFS of RFA and MWA groups (9.2 months vs 10.4 months, p < 0.05), while OS in two groups slightly varied. CONCLUSION: MWA was superior to RFA over local tumor control rate and PFS and showed great potential in lung cancer ablation treatment.


Subject(s)
Catheter Ablation , Liver Neoplasms , Lung Neoplasms , Radiofrequency Ablation , Humans , Liver Neoplasms/surgery , Lung Neoplasms/drug therapy , Lung Neoplasms/surgery , Microwaves , Retrospective Studies , Treatment Outcome
11.
Sensors (Basel) ; 21(7)2021 Apr 06.
Article in English | MEDLINE | ID: mdl-33917530

ABSTRACT

Concerning the triple-frequency ambiguity resolution, in principle there are three different realizations. The first one is to fix all the ambiguities of the original frequencies together. However, it is also believed that fixing the combined integer ambiguities with longer wavelength, such as extra-wide-lane (EWL), wide-lane (WL), should be advantageous. Also, it is demonstrated that fixing sequentially EWL, WL and one type of original ambiguities provides better results, as the previously fixed ambiguities increase parameters' precision for later fixings. In this paper, we undertake a comparative study of the three fixing approaches by means of experimental validation. In order to realize the three fixing approaches from the same information in terms of adjustment, we developed a processing strategy to provide fully consistent normal equations. We first generate the normal equation with the original undifferentiated carrier phase ambiguities, then map it into that with the combined and double-differenced ambiguities required by the individual approach for fixing. Four baselines of 258 m, 22 km, 47 km and 53 km are selected and processed in both static and kinematic mode using the three ambiguity-fixing approaches. Indicators including time of first fixed solution (TFFS), the correct fixing rate, positioning accuracy and RATIO are used to evaluate and investigate results. We also made a preliminary theoretical explanation of the results by looking into the decorrelation procedure of the ambiguity searching algorithm and the intermediate results. As conclusions, integrated searching of original ambiguities or combined ambiguities has almost the same fixing performance, whereas the sequential fixing of EWL, WL and B1 ambiguities overperforms the integrated searching. By the way, the third-frequency data can shorten the TFFS significantly but can hardly improve the positioning.

12.
Molecules ; 26(21)2021 Oct 27.
Article in English | MEDLINE | ID: mdl-34770902

ABSTRACT

Multiple insecticides' residues after the mixed application of several neonicotinoids cause combined pollution and bring new challenges to food safety and pest control during agricultural production. In this study, three neonicotinoid insecticides, namely imidacloprid (IMI), acetamiprid (ACE), and thiamethoxam (TMX), were mixed and evenly sprayed on Brassica chinensis L. in the field. Then, the insecticides' residues were dynamically monitored to determine the differences in their rates of dissipation and final residues after 10 days. The results showed that the dissipation kinetics of neonicotinoids still conformed to the first-order kinetic model for binary or ternary application of neonicotinoid mixtures, with all determination coefficients (R2) being above 0.9 and the dissipation half-life (DT50) being 2.87-6.74 d. For treatment groups with five times the recommended dosages (IMI 300 g·hm-2, ACE 900 g·hm-2, and TMX 600 g·hm-2), mixed insecticides had a slower dissipation rate, and the DT50 values of mixtures were longer than those of single insecticides. Moreover, the final insecticide residues with mixed application were higher than those of single compounds at 10 d after spraying. Thus, mixed applications of neonicotinoids may increase food safety risks as they increase the final insecticide residues in Brassica chinensis L., and care should therefore be taken when considering the combined use of such compounds.


Subject(s)
Brassica/chemistry , Neonicotinoids/chemistry , Chromatography, High Pressure Liquid , Insecticides/chemistry , Models, Chemical , Organ Specificity , Phytochemicals/chemistry , Plant Extracts/chemistry
13.
Development ; 144(9): 1635-1647, 2017 05 01.
Article in English | MEDLINE | ID: mdl-28465335

ABSTRACT

The epicardium contributes to multiple cardiac lineages and is essential for cardiac development and regeneration. However, the mechanism of epicardium formation is unclear. This study aimed to establish the cellular and molecular mechanisms underlying the dissociation of pro-epicardial cells (PECs) from the pro-epicardium (PE) and their subsequent translocation to the heart to form the epicardium. We used lineage tracing, conditional deletion, mosaic analysis and ligand stimulation in mice to determine that both villous protrusions and floating cysts contribute to PEC translocation to myocardium in a CDC42-dependent manner. We resolved a controversy by demonstrating that physical contact of the PE with the myocardium constitutes a third mechanism for PEC translocation to myocardium, and observed a fourth mechanism in which PECs migrate along the surface of the inflow tract to reach the ventricles. Epicardial-specific Cdc42 deletion disrupted epicardium formation, and Cdc42 null PECs proliferated less, lost polarity and failed to form villous protrusions and floating cysts. FGF signaling promotes epicardium formation in vivo, and biochemical studies demonstrated that CDC42 is involved in the trafficking of FGF receptors to the cell membrane to regulate epicardium formation.


Subject(s)
Cell Membrane/metabolism , Pericardium/cytology , Pericardium/metabolism , Receptors, Fibroblast Growth Factor/metabolism , cdc42 GTP-Binding Protein/metabolism , Animals , Cell Polarity , Cell Proliferation , Embryo, Mammalian/cytology , Embryo, Mammalian/metabolism , Extracellular Signal-Regulated MAP Kinases/metabolism , Fibroblast Growth Factor 2/metabolism , Intracellular Space/metabolism , Mice, Knockout , Models, Biological , Myocardium/cytology , Myocardium/metabolism , Phosphorylation , Protein Transport , Proto-Oncogene Proteins c-akt/metabolism
14.
Foods ; 13(8)2024 Apr 11.
Article in English | MEDLINE | ID: mdl-38672838

ABSTRACT

Seasonal (temporal) variations can influence the δ13C, δ2H, δ18O, and δ15N values and nutrient composition of organic (ORG), green (GRE), and conventional (CON) vegetables with a short growth cycle. Stable isotope ratio mass spectrometry (IRMS) and near-infrared spectroscopy (NIRS) combined with the partial least squares-discriminant analysis (PLS-DA) method were used to investigate seasonal effects on the identification of ORG, GRE, and CON Brassica chinensis L. samples (BCs). The results showed that δ15N values had significant differences among the three cultivation methods and that δ13C, δ2H, and δ18O values were significantly higher in winter and spring and lower in summer. The NIR spectra were relatively clustered across seasons. Neither IRMS-PLS-DA nor NIRS-PLS-DA could effectively identify all BC cultivation methods due to seasonal effects, while IRMS-NIRS-PLS-DA combined with Norris smoothing and derivative pretreatment had better predictive abilities, with an 89.80% accuracy for ORG and BCs, 88.89% for ORG and GRE BCs, and 75.00% for GRE and CON BCs. The IRMS-NIRS-PLS-DA provided an effective and robust method to identify BC cultivation methods, integrating multi-seasonal differences.

15.
Front Immunol ; 15: 1377472, 2024.
Article in English | MEDLINE | ID: mdl-38807601

ABSTRACT

Background: Gastric cancer (GC) poses a global health challenge due to its widespread prevalence and unfavorable prognosis. Although immunotherapy has shown promise in clinical settings, its efficacy remains limited to a minority of GC patients. Manganese, recognized for its role in the body's anti-tumor immune response, has the potential to enhance the effectiveness of tumor treatment when combined with immune checkpoint inhibitors. Methods: Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases was utilized to obtain transcriptome information and clinical data for GC. Unsupervised clustering was employed to stratify samples into distinct subtypes. Manganese metabolism- and immune-related genes (MIRGs) were identified in GC by univariate Cox regression and least absolute shrinkage and selection operator (LASSO) regression analysis. We conducted gene set variation analysis, and assessed the immune landscape, drug sensitivity, immunotherapy efficacy, and somatic mutations. The underlying role of NPR3 in GC was further analyzed in the single-cell RNA sequencing data and cellular experiments. Results: GC patients were classified into four subtypes characterized by significantly different prognoses and tumor microenvironments. Thirteen genes were identified and established as MIRGs, demonstrating exceptional predictive effectiveness in GC patients. Distinct enrichment patterns of molecular functions and pathways were observed among various risk subgroups. Immune infiltration analysis revealed a significantly greater abundance of macrophages and monocytes in the high-risk group. Drug sensitivity analysis identified effective drugs for patients, while patients in the low-risk group could potentially benefit from immunotherapy. NPR3 expression was significantly downregulated in GC tissues. Single-cell RNA sequencing analysis indicated that the expression of NPR3 was distributed in endothelial cells. Cellular experiments demonstrated that NPR3 facilitated the proliferation of GC cells. Conclusion: This is the first study to utilize manganese metabolism- and immune-related genes to identify the prognostic MIRGs for GC. The MIRGs not only reliably predicted the clinical outcome of GC patients but also hold the potential to guide future immunotherapy interventions for these patients.


Subject(s)
Gene Expression Regulation, Neoplastic , Manganese , Stomach Neoplasms , Tumor Microenvironment , Humans , Stomach Neoplasms/genetics , Stomach Neoplasms/immunology , Stomach Neoplasms/therapy , Prognosis , Tumor Microenvironment/immunology , Tumor Microenvironment/genetics , Biomarkers, Tumor/genetics , Transcriptome , Gene Expression Profiling , Immunotherapy/methods , Male , Female , Databases, Genetic
16.
Sci Rep ; 14(1): 6050, 2024 03 13.
Article in English | MEDLINE | ID: mdl-38480798

ABSTRACT

Effective drugs for the treatment of gastric cancer (GC) are still lacking. Nortriptyline Hydrochloride (NTP), a commonly used antidepressant medication, has been demonstrated by numerous studies to have antitumor effects. This study first validated the ability of NTP to inhibit GC and preliminarily explored its underlying mechanism. To begin with, NTP inhibits the activity of AGS and HGC27 cells (Human-derived GC cells) in a dose-dependent manner, as well as proliferation, cell cycle, and migration. Moreover, NTP induces cell apoptosis by upregulating BAX, BAD, and c-PARP and downregulating PARP and Bcl-2 expression. Furthermore, the mechanism of cell death caused by NTP is closely related to oxidative stress. NTP increases intracellular reactive oxygen species (ROS) and malondialdehyde (MDA) levels, decreasing the mitochondrial membrane potential (MMP) and inducing glucose (GSH) consumption. While the death of GC cells can be partially rescued by ROS inhibitor N-acetylcysteine (NAC). Mechanistically, NTP activates the Kelch-like ECH-associated protein (Keap1)-NF-E2-related factor 2 (Nrf2) pathway, which is an important pathway involved in oxidative stress. RNA sequencing and proteomics analysis further revealed molecular changes at the mRNA and protein levels and provided potential targets and pathways through differential gene expression analysis. In addition, NTP can inhibited tumor growth in nude mouse subcutaneous tumor models constructed respectively using AGS and MFC (mouse-derived GC cells), providing preliminary evidence of its effectiveness in vivo. In conclusion, our study demonstrated that NTP exhibits significant anti-GC activity and is anticipated to be a candidate for drug repurposing.


Subject(s)
NF-E2-Related Factor 2 , Stomach Neoplasms , Mice , Animals , Humans , Reactive Oxygen Species/metabolism , NF-E2-Related Factor 2/genetics , NF-E2-Related Factor 2/metabolism , Nortriptyline/pharmacology , Kelch-Like ECH-Associated Protein 1/genetics , Kelch-Like ECH-Associated Protein 1/metabolism , Stomach Neoplasms/drug therapy , Drug Repositioning , Poly(ADP-ribose) Polymerase Inhibitors/pharmacology , Oxidative Stress , Apoptosis
17.
Cardiovasc Res ; 2024 May 24.
Article in English | MEDLINE | ID: mdl-38794925

ABSTRACT

AIMS: The mechanisms regulating the cellular behavior and cardiomyocyte organization during ventricular wall morphogenesis are poorly understood. Cardiomyocytes are surrounded by extracellular matrix (ECM) and interact with ECM via integrins. This study aims to determine whether and how ß1 integrins regulate cardiomyocyte behavior and organization during ventricular wall morphogenesis in the mouse. METHODS AND RESULTS: We applied mRNA deep sequencing and immunostaining to determine the expression repertoires of α/ß integrins and their ligands in the embryonic heart. Integrin ß1 subunit (ß1) and some of its ECM ligands are asymmetrically distributed and enriched in the luminal side of cardiomyocytes, and fibronectin surrounds cardiomyocytes, creating a network for them. Itgb1, which encodes the ß1, was deleted via Nkx2.5Cre/+ to generate myocardial-specific Itgb1 knockout (B1KO) mice. B1KO hearts display an absence of a trabecular zone but a thicker compact zone. The levels of hyaluronic acid and versican, essential for trabecular initiation, were not significantly different between control and B1KO. Instead, fibronectin, a ligand of ß1, was absent in the myocardium of B1KO hearts. Furthermore, B1KO cardiomyocytes display a random cellular orientation and fail to undergo perpendicular cell division, be organized properly, and establish the proper tissue architecture to form trabeculae. Mosaic clonal lineage tracing showed that Itgb1 regulates cardiomyocyte transmural migration and proliferation autonomously. CONCLUSIONS: ß1 is asymmetrically localized in the cardiomyocytes, and some of its ECM ligands are enriched along the luminal side of the myocardium, and fibronectin surrounds cardiomyocytes. ß1 integrins are required for cardiomyocytes to attach to the ECM network. This engagement provides structural support for cardiomyocytes to maintain shape, undergo perpendicular division, and establish cellular organization. Deletion of Itgb1 leads to loss of ß1 and fibronectin and prevents cardiomyocytes from engaging the ECM network, resulting in failure to establish tissue architecture to form trabeculae.

18.
Appl Opt ; 52(18): 4412-8, 2013 Jun 20.
Article in English | MEDLINE | ID: mdl-23842187

ABSTRACT

Optical computing is a new method to implement signal processing functions. The multiplication between a vector and a matrix is an important arithmetic algorithm in the signal processing domain. The optical vector-matrix multiplier (OVMM) is an optoelectronic system to carry out this operation, which consists of an electronic module and an optical module. In this paper, we propose an optical module for OVMM. To eliminate the cross talk and make full use of the optical elements, an elaborately designed structure that involves spherical lenses and cylindrical lenses is utilized in this optical system. The optical design software package ZEMAX is used to optimize the parameters and simulate the whole system. Finally, experimental data is obtained through experiments to evaluate the overall performance of the system. The results of both simulation and experiment indicate that the system constructed can implement the multiplication between a matrix with dimensions of 16 by 16 and a vector with a dimension of 16 successfully.

19.
Sci Total Environ ; 867: 161499, 2023 Apr 01.
Article in English | MEDLINE | ID: mdl-36634769

ABSTRACT

Dam construction is the main factor altering the flow regimes, while few studies have described that in small and medium-sized rivers (SMRs). The universal indicators of hydrological alteration (IHA) that are widely used in large rivers calculate the parameters just on the annual scale and omit the intra-annual seasonal differences of the flow regimes in SMRs. To fully quantify dam-induced impacts on the flow regimes in SMRs, this paper proposes the improved IHA (IIHA) based on the universal IHA. Then two methods of range of variable approach (RVA) and histogram matching approach (HMA) are used to assess the flow regime alteration. Finally, two indicators of water quantity level (WQL)/hydrological alteration (HA) defined by the parameters in IIHA are employed to evaluate the influence of flow regime alteration on the riverine ecosystem. The case study of a typical SMR named Liujiaping River in Hunan Province, China, verifies the necessity of improving IHA where more hydrological parameters calculated in different periods can comprehensively reflect the flow regime alteration. We find that the integrated hydrological alteration of Liujiaping River assessed by RVA and HMA are both at a high level, and the flow regimes have been significantly altered after the dam construction. Also, the indicators of WQL and HA have higher correlation coefficients with 77 of IIHA parameters and thus can retain as much information of the flow regimes as possible to evaluate the influence of its alteration on the riverine ecosystem.

20.
Burns Trauma ; 11: tkad018, 2023.
Article in English | MEDLINE | ID: mdl-37274155

ABSTRACT

Cerebral ischemia is a neurological disorder associated with complex pathological mechanisms, including autophagic degradation of neuronal mitochondria, or termed mitophagy, following ischemic events. Despite being well-documented, the cellular and molecular mechanisms underlying the regulation of neuronal mitophagy remain unknown. So far, the evidence suggests neuronal autophagy and mitophagy are separately regulated in ischemic neurons, the latter being more likely activated by reperfusional injury. Specifically, given the polarized morphology of neurons, mitophagy is regulated by different neuronal compartments, with axonal mitochondria being degraded by autophagy in the cell body following ischemia-reperfusion insult. A variety of molecules have been associated with neuronal adaptation to ischemia, including PTEN-induced kinase 1, Parkin, BCL2 and adenovirus E1B 19-kDa-interacting protein 3 (Bnip3), Bnip3-like (Bnip3l) and FUN14 domain-containing 1. Moreover, it is still controversial whether mitophagy protects against or instead aggravates ischemic brain injury. Here, we review recent studies on this topic and provide an updated overview of the role and regulation of mitophagy during ischemic events.

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