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1.
BMC Genomics ; 17: 717, 2016 09 07.
Article in English | MEDLINE | ID: mdl-27604219

ABSTRACT

BACKGROUND: The transcriptional response to many widely used drugs and its modulation by genetic variability is poorly understood. Here we present an analysis of RNAseq profiles from heart tissue of 18 inbred mouse strains treated with the ß-blocker atenolol (ATE) and the ß-agonist isoproterenol (ISO). RESULTS: Differential expression analyses revealed a large set of genes responding to ISO (n = 1770 at FDR = 0.0001) and a comparatively small one responding to ATE (n = 23 at FDR = 0.0001). At a less stringent definition of differential expression, the transcriptional responses to these two antagonistic drugs are reciprocal for many genes, with an overall anti-correlation of r = -0.3. This trend is also observed at the level of most individual strains even though the power to detect differential expression is significantly reduced. The inversely expressed gene sets are enriched with genes annotated for heart-related functions. Modular analysis revealed gene sets that exhibit coherent transcription profiles across some strains and/or treatments. Correlations between these modules and a broad spectrum of cardiovascular traits are stronger than expected by chance. This provides evidence for the overall importance of transcriptional regulation for these organismal responses and explicits links between co-expressed genes and the traits they are associated with. Gene set enrichment analysis of differentially expressed groups of genes pointed to pathways related to heart development and functionality. CONCLUSIONS: Our study provides new insights into the transcriptional response of the heart to perturbations of the ß-adrenergic system, implicating several new genes that had not been associated to this system previously.


Subject(s)
Atenolol/pharmacology , Gene Expression Profiling/methods , Gene Regulatory Networks/drug effects , Heart/drug effects , Isoproterenol/pharmacology , Sequence Analysis, RNA/methods , Animals , Computational Biology/methods , Gene Expression Regulation/drug effects , Gene Ontology , Mice , Mice, Inbred Strains , Software
2.
J Pers Med ; 14(6)2024 Jun 17.
Article in English | MEDLINE | ID: mdl-38929869

ABSTRACT

Large-scale next-generation sequencing (NGS) germline testing is technically feasible today, but variant interpretation represents a major bottleneck in analysis workflows. This includes extensive variant prioritization, annotation, and time-consuming evidence curation. The scale of the interpretation problem is massive, and variants of uncertain significance (VUSs) are a challenge to personalized medicine. This challenge is further compounded by the complexity and heterogeneity of the standards used to describe genetic variants and the associated phenotypes when searching for relevant information to support clinical decision making. To address this, all five Swiss academic institutions for Medical Genetics joined forces with the Swiss Institute of Bioinformatics (SIB) to create SwissGenVar as a user-friendly nationwide repository and sharing platform for genetic variant data generated during routine diagnostic procedures and research sequencing projects. Its aim is to provide a protected environment for expert evidence sharing about individual variants to harmonize and upscale their significance interpretation at the clinical grade according to international standards. To corroborate the clinical assessment, the variant-related data will be combined with consented high-quality clinical information. Broader visibility will be achieved by interfacing with international databases, thus supporting global initiatives in personalized healthcare.

3.
Glia ; 61(7): 1041-51, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23553667

ABSTRACT

Mutations in SH3TC2 trigger autosomal recessive demyelinating Charcot-Marie-Tooth type 4C (CMT4C) neuropathy. Sh3tc2 is specifically expressed in Schwann cells and is necessary for proper myelination of peripheral axons. In line with the early onset of neuropathy observed in patients with CMT4C, our analyses of the murine model of CMT4C revealed that the myelinating properties of Sh3tc2-deficient Schwann cells are affected at an early stage. This early phenotype is associated with changes in the canonical Nrg1/ErbB pathway involved in control of myelination. We demonstrated that Sh3tc2 interacts with ErbB2 and plays a role in the regulation of ErbB2 intracellular trafficking from the plasma membrane upon Nrg1 activation. Interestingly, both the loss of Sh3tc2 function in mice and the pathological mutations present in CMT4C patients affect ErbB2 internalization, potentially altering its downstream intracellular signaling pathways. Altogether, our results indicate that the molecular mechanism for the axonal size sensing is disturbed in Sh3tc2-deficient myelinating Schwann cells, thus providing a novel insight into the pathophysiology of CMT4C neuropathy.


Subject(s)
Carrier Proteins/metabolism , Neuregulin-1/metabolism , Receptor, ErbB-2/metabolism , Animals , Animals, Newborn , Carrier Proteins/genetics , Cells, Cultured , Gene Expression Regulation/genetics , Humans , Immunoprecipitation , Intracellular Signaling Peptides and Proteins , Mice , Mice, Knockout , Neuregulin-1/genetics , Receptor, ErbB-2/genetics , Schwann Cells/metabolism , Sciatic Nerve/cytology , Sciatic Nerve/metabolism , Subcellular Fractions/metabolism
4.
Eur J Med Genet ; 65(12): 104627, 2022 Dec.
Article in English | MEDLINE | ID: mdl-36162733

ABSTRACT

MYBPC3 is the most frequently mutated gene in hypertrophic cardiomyopathy (HCM). Several loss-of-function founder variants have been reported in MYBPC3 from various geographic regions, altogether suggestive of a modest or absent effect of these variants on reproductive fitness. One of them, a MYBPC3 splice variant, NM_000256.3:c.3330+2T > G, was first described in homozygous state in newborns presenting with a severe, recessive form of HCM among the Amish population and was later associated with adult-onset dominant HCM in heterozygous carriers. We here report this splice variant in heterozygous state in eight unrelated Swiss families with HCM, making it the most prevalent cardiomyopathy variant in western Switzerland. This variant was identified in patients using targeted (n = 5) or full-genome sequencing (n = 3). Given the prevalence of this variant in the Old Order Amish, Mennonites and Swiss populations, and given that both Amish and Mennonites founders originated from the Bern Canton in Switzerland, the MYBPC3, NM_000256.3:c.3330+2T > G variant appears to be of Swiss origin. Neighboring regions that hosted the first Amish settlements (Alsace, South Germany) should be on the lookout for that variant. The existence of MYBPC3 founder variants in different populations suggests that individuals with early-onset clinical disease may be the tip of the iceberg of a much larger number of asymptomatic carriers. Alternatively, reproductive fitness could even be slightly increased in some variant carriers to compensate for the reduction of fitness in the more severely affected ones, but this remains to be investigated.


Subject(s)
Cardiomyopathy, Hypertrophic , Carrier Proteins , Adult , Humans , Infant, Newborn , Switzerland , Carrier Proteins/genetics , Cardiomyopathy, Hypertrophic/genetics , Mutation , Heterozygote , Cytoskeletal Proteins/genetics
5.
Biochim Biophys Acta ; 1768(9): 2222-34, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17626783

ABSTRACT

We have explored the threshold of tolerance of three unrelated cell types to treatments with potential cytoprotective peptides bound to Tat(48-57) and Antp(43-58) cell-permeable peptide carriers. Both Tat(48-57) and Antp(43-58) are well known for their good efficacy at crossing membranes of different cell types, their overall low toxicity, and their absence of leakage once internalised. Here, we show that concentrations of up to 100 microM of Tat(48-57) were essentially harmless in all cells tested, whereas Antp(43-58) was significantly more toxic. Moreover, all peptides bound to Tat(48-57) and Antp(43-58) triggered significant and length-dependent cytotoxicity when used at concentrations above 10 microM in all but one cell types (208F rat fibroblasts), irrespective of the sequence of the cargo. Absence of cytotoxicity in 208F fibroblasts correlated with poor intracellular peptide uptake, as monitored by confocal laser scanning fluorescence microscopy. Our data further suggest that the onset of cytotoxicity correlates with the activation of two intracellular stress signalling pathways, namely those involving JNK, and to a lesser extent p38 mitogen-activated protein kinases. These responses are of particular concern for cells that are especially sensitive to the activation of stress kinases. Collectively, these results indicate that in order to avoid unwanted and unspecific cytotoxicity, effector molecules bound to Tat(48-57) should be designed with the shortest possible sequence and the highest possible affinity for their binding partners or targets, so that concentrations below 10 microM can be successfully applied to cells without harm. Considering that cytotoxicity associated to Tat(48-57)- and Antp(43-58) bound peptide conjugates was not restricted to a particular type of cells, our data provide a general framework for the design of cell-penetrating peptides that may apply to broader uses of intracellular peptide and drug delivery.


Subject(s)
Cell Membrane Permeability/drug effects , Cell Membrane Permeability/physiology , Insulin-Secreting Cells/cytology , Insulin-Secreting Cells/drug effects , Peptides/administration & dosage , Peptides/pharmacokinetics , Animals , Apoptosis/drug effects , Cell Survival/drug effects , Dose-Response Relationship, Drug , Metabolic Clearance Rate , Molecular Weight , Peptides/chemistry , Rats
6.
Mol Vis ; 14: 1129-37, 2008 Jun 13.
Article in English | MEDLINE | ID: mdl-18568131

ABSTRACT

PURPOSE: Despite ubiquitous expression of the keratoepithelin (KE) protein encoded by the transforming growth factor beta induced/beta induced gene human clone 3 (TGFBI/BIGH3) gene, corneal dystrophies are restricted to the cornea, and no other tissues are affected. We investigated the role of TGFBI/BIGH3 in Groenouw corneal dystrophies by generating transgenic mice overexpressing TGFBI/BIGH3 containing the R555W mutation. METHODS: Transgenic animals expressing the Groenouw mutation of human TGFBI/BIGH3 were generated using lentiviral vectors. The line expressed TGFBI/BIGH3 containing the R555W mutation under the control of the phosphoglycerate kinase (PGK) promoter. Expression of the transgene was monitored by Southern and western blotting and by RT-PCR. Electroretinogram analysis was performed and four mice were subjected to complete necroscopy. RESULTS: Transgene expression was observed in different organs although without specific expression in the cornea. The overall morphology of the transgenic animals was not severely affected by KE overexpression. However, we observed an age-dependent retinal degeneration both functionally and histologically. Female-specific follicular hyperplasia in the spleen and increased levels of lipofuscin in the adrenal gland were also seen in transgenic animals. CONCLUSIONS: Cellular degeneration in the retina of transgenic animals suggest that perturbation of the transforming growth factor beta (TGFbeta) family regulation may affect photoreceptor survival and may induce possible accelerated aging in several tissues. No corneal phenotype could be observed, probably due to the lack of transgene expression in this tissue.


Subject(s)
Extracellular Matrix Proteins/metabolism , Mutant Proteins/metabolism , Retinal Degeneration/pathology , Transforming Growth Factor beta/metabolism , Animals , Blotting, Southern , Blotting, Western , Electroretinography , Extracellular Matrix Proteins/genetics , Female , Gene Expression Regulation , Humans , Hyperplasia , Lentivirus , Male , Mice , Mice, Transgenic , Organ Size , Organ Specificity , Phosphoglycerate Kinase/genetics , Promoter Regions, Genetic/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Reproducibility of Results , Retinal Degeneration/enzymology , Spleen/pathology , Transforming Growth Factor beta/genetics , Virus Integration
7.
Mol Cell Biol ; 23(20): 7177-88, 2003 Oct.
Article in English | MEDLINE | ID: mdl-14517288

ABSTRACT

The mRNAs of urokinase plasminogen activator (uPA) and its receptor, uPAR, contain instability-determining AU-rich elements (AREs) in their 3' untranslated regions. The cellular proteins binding to these RNA sequences (ARE(uPA/uPAR)) are not known. We show here that the mRNA-stabilizing factor HuR functionally interacts with these sequences. HuR stabilized an ARE(uPA)-containing RNA substrate in vitro and stabilized in HeLa Tet-off cells both endogenous uPA and uPAR mRNAs and a beta-globin reporter mRNA containing the ARE(uPA). RNAi-mediated depletion of HuR in BT-549 and MDA-MB-231 cells significantly reduced the steady-state levels of endogenous uPA and uPAR mRNAs. Furthermore, we show that a constitutively active form of mitogen-activated protein kinase-activated protein kinase 2 (MK2), MK2-EE, has an ARE-mRNA-stabilizing effect that correlates with its ability to enhance the cytoplasmic accumulation of endogenous HuR, but not in cells cotransfected with a dominant negative version of MK2, MK2-K76R. These effects were mimicked by hydrogen peroxide treatment (oxidative stress), which resulted in the phosphorylation of endogenous MK2. In addition, hydrogen peroxide treatment enhanced the cytoplasmic binding of HuR to the ARE(uPA), which was abrogated in cells transfected with MK2-K76R. These results indicate a role for HuR and MK2 in regulating the expression of uPA and uPAR genes at the posttranscriptional level.


Subject(s)
Antigens, Surface , Cytoplasm/metabolism , Gene Expression Regulation, Enzymologic , Mitogen-Activated Protein Kinases/metabolism , Protein Kinases , RNA, Messenger/metabolism , RNA-Binding Proteins/metabolism , Receptors, Cell Surface/metabolism , Urokinase-Type Plasminogen Activator/metabolism , Blotting, Northern , Blotting, Western , Cell Line , Cell Line, Tumor , Doxycycline/pharmacology , ELAV Proteins , ELAV-Like Protein 1 , Enzyme Activation , Genes, Dominant , Genetic Vectors , Glutathione Transferase/metabolism , HeLa Cells , Humans , Hydrogen Peroxide/pharmacology , Intracellular Signaling Peptides and Proteins , Microscopy, Fluorescence , Models, Genetic , Oxidative Stress , Precipitin Tests , Protein Binding , Protein Serine-Threonine Kinases , RNA/metabolism , Receptors, Urokinase Plasminogen Activator , Recombinant Proteins/metabolism , Signal Transduction , Time Factors , Transcription, Genetic , Transfection , Ultraviolet Rays
8.
J Biomol Screen ; 11(8): 1015-26, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17092917

ABSTRACT

Protein kinases are directly implicated in many human diseases; therefore, kinase inhibitors show great promises as new therapeutic drugs. In an effort to facilitate the screening and the characterization of kinase inhibitors, a novel application of the AlphaScreen technology was developed to monitor JNK activity from (1) purified kinase preparations and (2) endogenous kinase from cell lysates preactivated with different cytokines. The authors confirmed that both adenosine triphosphate (ATP) competitive as well as peptide-based JNK inhibitors were able to block the activity of both recombinant and HepG2 endogenous JNK activity. Using the same luminescence technique adapted for binding studies, the authors characterized peptide inhibitor mechanisms by measuring the binding affinity of the inhibitors for JNK. Because of the versatility of the technology, this cell-based JNK kinase assay could be adapted to other kinases and would represent a powerful tool to evaluate endogenous kinase activity and test a large number of potential inhibitors in a more physiologically relevant environment.


Subject(s)
Combinatorial Chemistry Techniques/methods , Drug Evaluation, Preclinical/methods , Enzyme Inhibitors/chemistry , Protein Kinases/metabolism , Binding Sites , Binding, Competitive , Cell Line , Dose-Response Relationship, Drug , Humans , MAP Kinase Kinase 4/metabolism
9.
Swiss Med Wkly ; 146: w14326, 2016.
Article in English | MEDLINE | ID: mdl-27497240

ABSTRACT

AIMS: We aimed to identify familial hypercholesterolaemia mutation carriers among participants to the Lausanne Institutional Biobank (BIL). Our experimental workflow was designed as a proof-of-concept demonstration of the resources and services provided by our integrated institutional clinical research support platform. METHODS: Familial hypercholesterolaemia was used as a model of a relatively common yet often underdiagnosed and inadequately treated Mendelian disease. Clinical and laboratory information was extracted from electronic hospital records. Patients were selected using elevated plasma cholesterol levels (total cholesterol ≥7.5 mM or low-density lipoprotein cholesterol ≥5 mM), premature coronary artery disease status and age (18-60 yr) as main inclusion criteria. LDLR, APOB and PCSK9 were analysed by high-throughput DNA sequencing. The most relevant mutations were confirmed by Sanger sequencing. RESULTS: Of 23 737 patients contacted by the BIL, 17 760 individuals consented to participate and 13 094 wished to be recontacted if there were findings requiring clinical action. Plasma cholesterol records were available for 5111 participants, of whom 94 were selected for genetic screening. Twenty-five of the tested patients presented with premature coronary artery disease while 69 had no such diagnosis. Seven heterozygous carriers of eight rare coding missense variants were identified. Three mutations were pathogenic (APOB p.R3527Q) or likely pathogenic (LDLR p.C27W, LDLR p.P526S) for hypercholesterolaemia, while the others were either benign or of unknown significance. One patient was a double heterozygote for variants APOB p.R3527Q and LDLR p.P526S. CONCLUSION: This work illustrates how clinical and translational research can benefit from a dedicated platform integrating both a hospital-based biobank and a data support team.


Subject(s)
Apolipoproteins B/genetics , Hyperlipoproteinemia Type II/genetics , Proprotein Convertase 9/genetics , Receptors, LDL/genetics , Adolescent , Adult , Biological Specimen Banks , Cholesterol/blood , Cholesterol, LDL/blood , Coronary Artery Disease/epidemiology , Female , Humans , Hyperlipoproteinemia Type II/blood , Male , Medical Records , Middle Aged , Mutation/genetics , Polymerase Chain Reaction , Switzerland/epidemiology , Young Adult
10.
Hum Mutat ; 25(6): 507-12, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15880746

ABSTRACT

Protein kinase genes account for almost 10% of all currently known cancer genes, highlighting the role of signal transduction in oncogenesis. A reexamination of the literature and available databases shows that E3 ubiquitin ligases are also key mediators of tumorigenesis. Altogether kinase and E3 genes represent more than 15% of the known cancer genes, underlining the importance of phosphorylation and ubiquitylation signaling pathways in cancer formation. Considering the recent literature reporting correlations between alterations in ubiquitylation processes and oncogenesis, this percentage is likely to increase even further in the future. Finally, E3 genes could serve as baits for the identification of additional cancer genes (e.g. their interacting partners). In contrast, deubiquitinases, like phosphatases, are not overrepresented among cancer genes. The same holds for E1 and E2 genes. Thus, kinase and E3 genes represent primary targets as cancer susceptibility genes for mutation screening and for the design of novel therapies.


Subject(s)
Neoplasms/enzymology , Ubiquitin-Protein Ligases/metabolism , Genes, Neoplasm/genetics , Humans , Mutation/genetics , Ubiquitin-Protein Ligases/chemistry
11.
Stroke ; 35(7): 1738-43, 2004 Jul.
Article in English | MEDLINE | ID: mdl-15178829

ABSTRACT

BACKGROUND AND PURPOSE: In 2 models of severe ischemic injury, we have evaluated the neuroprotective action of D-JNKI1, a cell-penetrating and protease-resistant peptide selectively inhibiting the c-Jun-N-terminal kinase (JNK). METHODS: Hippocampal slices from newborn rats were subjected to oxygen (5%) and glucose (1 mmol/L) deprivation for 30 minutes. Cell death was evaluated with propidium iodide, and the evoked potential responses were recorded in the CA1 region after stimulation in CA3. Male ICR-CD1 mice were subjected to permanent endoluminal "suture" middle cerebral artery occlusion (MCAo). The lesion size was determined after 24 hours by triphenyl-tetrazolium chloride staining, and neurological scores and rotarod treadmill performance were used to evaluate the neurological outcome. RESULTS: In vitro, D-JNKI administration 6 hours after oxygen glucose deprivation reduced cell death at 24 hours from 21%+/-8% (n=10) to 5%+/-3% (n=7, P<0.01). This protective effect was still seen at 48 hours, paralleled by an improved amplitude of the evoked potential response. In vivo in the mouse, D-JNKI1 administration 3 hours after ischemia significantly reduced the infarct volume from 162+/-27 mm(3) (n=14) to 85+/-27 mm(3) (n=9, P<0.001). The functional outcome was also improved. CONCLUSIONS: JNK inhibition prevents cell death induced by oxygen and glucose deprivation in hippocampal slice cultures in vitro and by permanent suture MCAo in vivo. D-JNKI1 is a powerful neuroprotectant in models of both mild and severe cerebral ischemia, with an extended therapeutic window. Further investigations are needed to identify the relevant JNK target(s) mediating ischemic neuronal death.


Subject(s)
Brain Ischemia/drug therapy , Cell Death/drug effects , Neuroprotective Agents/pharmacology , Peptides/pharmacology , Animals , Animals, Newborn , Brain Ischemia/pathology , Culture Media , Glucose , Hippocampus/metabolism , Hippocampus/pathology , In Vitro Techniques , Infarction, Middle Cerebral Artery , Male , Mice , Models, Animal , Oxygen , Psychomotor Performance , Rats
12.
Invest Ophthalmol Vis Sci ; 44(7): 2973-9, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12824240

ABSTRACT

PURPOSE: To determine the effects of overexpression of mutated BIGH3 in HeLa and human corneal epithelial (HCE) cells. METHODS: Six mutations known to be responsible for autosomal dominant corneal dystrophies linked to chromosome 5 were generated in a BIGH3 expression vector and transfected in HeLa and HCE cells. The expression and secretion of the various BIGH3-EGFP fusion proteins were measured by Western blot analysis. Apoptotic cells were identified by Hoechst/propidium iodide and annexin V staining. Lactate dehydrogenase (LDH) activity was measured in the medium of transfected cells. Truncated BIGH3 protein and site-specific mutations were generated to determine the exact region that mediated apoptosis. RESULT: The overexpressed BIGH3 fusion protein was secreted regardless of its mutation status and was clearly observed in the culture medium. Overexpression of mutated BIGH3 induced apoptosis in both cell lines through activation of caspase-3. Although all the disease-causing mutations tested in this experiment induced apoptosis, the strongest effect was observed with the R124C and R555W mutations. Overexpression of a carboxyl-truncated BIGH3 protein did not induce apoptosis, suggesting that a region located in the C-terminal domain was necessary to mediate cell death. In addition, mutation of the Pro-Asp-Ile (PDI) site at 616-618 was sufficient to prevent induction of apoptosis. CONCLUSIONS: Overexpression of mutated BIGH3 induces apoptosis in HeLa and HCE cells through activation of a pathway that uses the PDI domain of the fourth internal Fas domain and activation of caspase-3. Because DI is a known site of interaction with alpha 3 beta 1 integrins, it suggests that integrins play a role in mediating apoptosis in the system used in the current study. This work suggests that apoptosis is a key element in the pathophysiology of BIGH3-related corneal dystrophies.


Subject(s)
Apoptosis/genetics , Epithelium, Corneal/pathology , Extracellular Matrix Proteins , Mutation , Neoplasm Proteins/genetics , Transforming Growth Factor beta , Annexin A5/metabolism , Caspase 3 , Caspases/metabolism , Corneal Dystrophies, Hereditary/genetics , Corneal Dystrophies, Hereditary/pathology , Epithelium, Corneal/metabolism , Green Fluorescent Proteins , HeLa Cells/metabolism , HeLa Cells/pathology , Humans , L-Lactate Dehydrogenase/metabolism , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Mutagenesis, Site-Directed , Neoplasm Proteins/metabolism , Propidium , Recombinant Fusion Proteins , Reverse Transcriptase Polymerase Chain Reaction , Transfection
13.
Thromb Haemost ; 87(5): 846-53, 2002 May.
Article in English | MEDLINE | ID: mdl-12038788

ABSTRACT

The G20210A polymorphism has been shown to alter the efficiency of prothrombin mRNA processing. Here we show that the G20210A mutation also alters prothrombin mRNA stability. Three-fold more prothrombin protein and mRNA were produced in NIH-3T3 cells transfected with the prothrombin cDNAs containing the 20210A variant compared to cells expressing the 20210G variant. mRNA stability assays using chimeric globin transcripts harboring the G or A variant of the 97 nt prothrombin 3'-UTR indicated that the 20210G variant conferred greater instability to the globin reporter transcript than the A variant in transfected HepG2 cells. Both variants of the prothrombin 3'-UTR were shown to provide binding sites for a number of cellular proteins including HuR, an RNA binding protein associated with mRNA stability. Our results indicate that the G20210A is a bifunctional polymorphism, as it not only alters the efficiency of mRNA processing, but also the decay rate of prothrombin mRNA.


Subject(s)
3' Untranslated Regions/genetics , Antigens, Surface , Heterogeneous-Nuclear Ribonucleoprotein D , Polymorphism, Genetic , Prothrombin/genetics , RNA, Messenger/metabolism , 3T3 Cells , Alleles , Animals , Binding Sites , DNA, Complementary/genetics , DNA, Recombinant/genetics , ELAV Proteins , ELAV-Like Protein 1 , Electrophoretic Mobility Shift Assay , Gene Expression Regulation , Genes, Reporter , Globins/genetics , Heterogeneous Nuclear Ribonucleoprotein D0 , Humans , Mice , Protein Biosynthesis , Prothrombin/biosynthesis , RNA, Messenger/genetics , RNA-Binding Proteins/metabolism , Regulatory Sequences, Nucleic Acid , Transcription, Genetic , Transfection , Tumor Cells, Cultured
14.
PLoS One ; 7(7): e41032, 2012.
Article in English | MEDLINE | ID: mdl-22859963

ABSTRACT

ß-blockers and ß-agonists are primarily used to treat cardiovascular diseases. Inter-individual variability in response to both drug classes is well recognized, yet the identity and relative contribution of the genetic players involved are poorly understood. This work is the first genome-wide association study (GWAS) addressing the values and susceptibility of cardiovascular-related traits to a selective ß(1)-blocker, Atenolol (ate), and a ß-agonist, Isoproterenol (iso). The phenotypic dataset consisted of 27 highly heritable traits, each measured across 22 inbred mouse strains and four pharmacological conditions. The genotypic panel comprised 79922 informative SNPs of the mouse HapMap resource. Associations were mapped by Efficient Mixed Model Association (EMMA), a method that corrects for the population structure and genetic relatedness of the various strains. A total of 205 separate genome-wide scans were analyzed. The most significant hits include three candidate loci related to cardiac and body weight, three loci for electrocardiographic (ECG) values, two loci for the susceptibility of atrial weight index to iso, four loci for the susceptibility of systolic blood pressure (SBP) to perturbations of the ß-adrenergic system, and one locus for the responsiveness of QTc (p<10(-8)). An additional 60 loci were suggestive for one or the other of the 27 traits, while 46 others were suggestive for one or the other drug effects (p<10(-6)). Most hits tagged unexpected regions, yet at least two loci for the susceptibility of SBP to ß-adrenergic drugs pointed at members of the hypothalamic-pituitary-thyroid axis. Loci for cardiac-related traits were preferentially enriched in genes expressed in the heart, while 23% of the testable loci were replicated with datasets of the Mouse Phenome Database (MPD). Altogether these data and validation tests indicate that the mapped loci are relevant to the traits and responses studied.


Subject(s)
Adrenergic beta-Agonists/pharmacology , Adrenergic beta-Antagonists/pharmacology , Atenolol/pharmacology , Chromosome Mapping , Isoproterenol/pharmacology , Polymorphism, Single Nucleotide , Animals , Blood Pressure/drug effects , Blood Pressure/genetics , Female , Genetic Loci , Heart Rate/drug effects , Heart Rate/genetics , Mice , Mice, Inbred C57BL , Myocardium/metabolism , Organ Size/genetics , Transcriptome
15.
PLoS One ; 4(8): e6610, 2009 Aug 12.
Article in English | MEDLINE | ID: mdl-19672458

ABSTRACT

We report the characterisation of 27 cardiovascular-related traits in 23 inbred mouse strains. Mice were phenotyped either in response to chronic administration of a single dose of the beta-adrenergic receptor blocker atenolol or under a low and a high dose of the beta-agonist isoproterenol and compared to baseline condition. The robustness of our data is supported by high trait heritabilities (typically H(2)>0.7) and significant correlations of trait values measured in baseline condition with independent multistrain datasets of the Mouse Phenome Database. We then focused on the drug-, dose-, and strain-specific responses to beta-stimulation and beta-blockade of a selection of traits including heart rate, systolic blood pressure, cardiac weight indices, ECG parameters and body weight. Because of the wealth of data accumulated, we applied integrative analyses such as comprehensive bi-clustering to investigate the structure of the response across the different phenotypes, strains and experimental conditions. Information extracted from these analyses is discussed in terms of novelty and biological implications. For example, we observe that traits related to ventricular weight in most strains respond only to the high dose of isoproterenol, while heart rate and atrial weight are already affected by the low dose. Finally, we observe little concordance between strain similarity based on the phenotypes and genotypic relatedness computed from genomic SNP profiles. This indicates that cardiovascular phenotypes are unlikely to segregate according to global phylogeny, but rather be governed by smaller, local differences in the genetic architecture of the various strains.


Subject(s)
Adrenergic beta-Agonists/pharmacology , Adrenergic beta-Antagonists/pharmacology , Atenolol/pharmacology , Cardiovascular Physiological Phenomena , Isoproterenol/pharmacology , Animals , Body Weight/drug effects , Electrocardiography , Heart Rate/drug effects , Mice , Mice, Inbred Strains , Organ Size/drug effects , Phenotype
16.
Mol Cell Biochem ; 313(1-2): 133-8, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18418700

ABSTRACT

Whether the response of the fetal heart to ischemia-reperfusion is associated with activation of the c-Jun N-terminal kinase (JNK) pathway is not known. In contrast, involvement of the sarcolemmal L-type Ca2+ channel (LCC) and the mitochondrial KATP (mitoKATP) channel has been established. This work aimed at investigating the profile of JNK activity during anoxia-reoxygenation and its modulation by LCC and mitoK(ATP) channel. Hearts isolated from 4-day-old chick embryos were submitted to anoxia (30 min) and reoxygenation (60 min). Using the kinase assay method, the profile of JNK activity in the ventricle was determined every 10 min throughout anoxia-reoxygenation. Effects on JNK activity of the LCC blocker verapamil (10 nM), the mitoK(ATP) channel opener diazoxide (50 microM) and the blocker 5-hydroxydecanoate (5-HD, 500 microM), the mitochondrial Ca2+ uniporter (MCU) inhibitor Ru360 (10 microM), and the antioxidant N-(2-mercaptopropionyl) glycine (MPG, 1 mM) were determined. In untreated hearts, JNK activity was increased by 40% during anoxia and peaked fivefold relative to basal level after 30-40 min reoxygenation. This peak value was reduced by half by diazoxide and was tripled by 5-HD. Furthermore, the 5-HD-mediated stimulation of JNK activity during reoxygenation was abolished by diazoxide, verapamil or Ru360. MPG had no effect on JNK activity, whatever the conditions. None of the tested pharmacological agents altered JNK activity under basal normoxic conditions. Thus, in the embryonic heart, JNK activity exhibits a characteristic pattern during anoxia and reoxygenation and the respective open-state of LCC, MCU and mitoKATP channel can be a major determinant of JNK activity in a ROS-independent manner.


Subject(s)
Calcium/metabolism , Heart/embryology , Hypoxia/enzymology , JNK Mitogen-Activated Protein Kinases/metabolism , Potassium Channels/metabolism , Animals , Calcium Channels/metabolism , Chickens , Enzyme Stability , Heart Ventricles/embryology , Heart Ventricles/enzymology , In Vitro Techniques , Ion Channel Gating , Models, Biological , Sarcolemma/metabolism
17.
EMBO J ; 25(4): 785-97, 2006 Feb 22.
Article in English | MEDLINE | ID: mdl-16456539

ABSTRACT

Islet-brain 1 (IB1 or JIP-1) is a scaffold protein that interacts with components of the c-Jun N-terminal kinase (JNK) signal-transduction pathway. IB1 is expressed at high levels in neurons and in pancreatic beta-cells, where it controls expression of several insulin-secretory components and secretion. IB1 has been shown to homodimerize, but neither the molecular mechanisms nor the function of dimerization have yet been characterized. Here, we show that IB1 homodimerizes through a novel and unique set of Src homology 3 (SH3)-SH3 interactions. X-ray crystallography studies show that the dimer interface covers a region usually engaged in PxxP-mediated ligand recognition, even though the IB1 SH3 domain lacks this motif. The highly stable IB1 homodimer can be significantly destabilized in vitro by three individual point mutations directed against key residues involved in dimerization. Each mutation reduces IB1-dependent basal JNK activity in 293T cells. Impaired dimerization also results in a reduction in glucose transporter type 2 expression and in glucose-dependent insulin secretion in pancreatic beta-cells. Taken together, these results indicate that IB1 homodimerization through its SH3 domain has pleiotropic effects including regulation of the insulin secretion process.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Gene Expression Regulation/physiology , Insulin-Secreting Cells/metabolism , Insulin/metabolism , MAP Kinase Kinase 4/metabolism , Adaptor Proteins, Signal Transducing/chemistry , Adaptor Proteins, Signal Transducing/genetics , Amino Acid Substitution , Cell Line , Crystallography, X-Ray , Dimerization , Glucose Transporter Type 2/metabolism , Humans , Insulin Secretion , MAP Kinase Kinase 4/chemistry , Neurons/metabolism , Point Mutation , src Homology Domains/genetics
18.
Clin Exp Ophthalmol ; 33(6): 628-35, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16402957

ABSTRACT

BACKGROUND: Future treatment for genetic diseases may involve the replacement of malfunctioning genes through virus-mediated gene therapy. However, this approach is plagued with many problems, both ethical and scientific. Therefore, alternative treatments based on new molecules may represent a safer option. Molecular treatment of many eye diseases will need to bring active molecules into the photoreceptors. Recently, the trans-activator protein (TAT) human immunodeficiency virus type 1 (HIV-1) transcriptional factor has proven to be effective in transporting molecules across cellular membranes. The half-life of these molecules does not exceed 48 hours. The potential use of the retro-inverso form of the TAT (D-TAT) peptide, the protein transducing domain of the HIV-1 transcriptional factor, as a molecular transporter was investigated. METHODS: FITC-labelled D-TAT (D-TAT FITC) was applied to the 661W murine photoreceptor cell line in culture. The labelled peptide was also injected into the vitreous body or the subretinal space of adult mice. Cells and cryosections of eyes were analysed under fluorescence microscopy at various time points after peptide treatment. Coimmunostaining with various antibodies was performed in order to characterize the transduces cells. RESULTS: D-TAT was effective in transducing photoreceptor cells in culture. Transduction of D-TAT FITC was also effective when injected into the vitreous or subretinal space and was observed for a longer period of time than L-TAT FITC. CONCLUSIONS: The retro-inverso form of the TAT sequence is effective in transducing cells from various compartments of the eye. After 14 days, the D-TAT FITC was clearly visible in the retina whereas L-TAT FITC had almost disappeared. The D-TAT peptide represents an interesting molecular transporter that, when coupled to a specific effector, may have potential therapeutic future, especially when a long-lasting action is needed.


Subject(s)
Drug Delivery Systems , Fluorescein-5-isothiocyanate/metabolism , Gene Products, tat/metabolism , Recombinant Fusion Proteins/metabolism , Retina/metabolism , Animals , Cells, Cultured , Gene Expression Regulation/physiology , Gene Products, tat/genetics , Genetic Therapy/methods , Injections , Mice , Microscopy, Fluorescence , Protein Transport , Retina/cytology , Transcriptional Activation , Vitreous Body
19.
Blood ; 99(8): 2810-8, 2002 Apr 15.
Article in English | MEDLINE | ID: mdl-11929770

ABSTRACT

We have explored the role of plasminogen activator inhibitor type 2 (PAI-2) in THP-1 monocyte-like cells. These cells possess a mutation in the PAI-2 gene and do not produce an active PAI-2 protein. Transfection of THP-1 cells with plasmids expressing active PAI-2 reduced the cells' inherent adhesive properties and decreased the rate of cell proliferation. THP-1 cells expressing active PAI-2 also displayed an altered phenotype in response to phorbol ester-induced differentiation that was concomitant with a reduction in CD14 expression. THP-1 cells transfected with a variant PAI-2 containing a mutation in the reactive center (PAI-2(Ala380)) displayed no noticeable change in any of these parameters, suggesting the involvement of a PAI-2-sensitive serine protease(s). The antiproliferative effect of PAI-2 was attenuated by treating the PAI-2-expressing THP-1 cells with recombinant urokinase (u-PA), suggesting that PAI-2 was disruptive of a u-PA/u-PA receptor signaling pathway initiated on the cell surface. Consistent with this, treatment of wild-type THP-1 cells with recombinant PAI-2 also caused a reduction in cellular proliferation. These results implicate endogenous PAI-2 as a modulator of monocyte adhesion, proliferation, and differentiation.


Subject(s)
Monocytes/cytology , Plasminogen Activator Inhibitor 2/physiology , Serine Proteinase Inhibitors/physiology , Amino Acid Substitution , Binding Sites/genetics , Binding Sites/physiology , Cell Adhesion/drug effects , Cell Differentiation/drug effects , Cell Division/drug effects , Humans , Monocytes/drug effects , Mutation , Plasminogen Activator Inhibitor 2/genetics , Plasminogen Activator Inhibitor 2/pharmacology , Protein Binding/physiology , Serine Proteinase Inhibitors/genetics , Serine Proteinase Inhibitors/pharmacology , Signal Transduction/drug effects , Transfection , Tumor Cells, Cultured , Urokinase-Type Plasminogen Activator/drug effects , Urokinase-Type Plasminogen Activator/metabolism , Urokinase-Type Plasminogen Activator/physiology
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