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1.

A selective sweep in the Spike gene has driven SARS-CoV-2 human adaptation.

Kang, Lin; He, Guijuan; Sharp, Amanda K; Wang, Xiaofeng; Brown, Anne M; Michalak, Pawel; Weger-Lucarelli, James.

Cell ; 184(17): 4392-4400.e4, 2021 08 19.

Article in English | MEDLINE | ID: mdl-34289344

2.

The tuatara genome reveals ancient features of amniote evolution.

Gemmell, Neil J; Rutherford, Kim; Prost, Stefan; Tollis, Marc; Winter, David; Macey, J Robert; Adelson, David L; Suh, Alexander; Bertozzi, Terry; Grau, José H; Organ, Chris; Gardner, Paul P; Muffato, Matthieu; Patricio, Mateus; Billis, Konstantinos; Martin, Fergal J; Flicek, Paul; Petersen, Bent; Kang, Lin; Michalak, Pawel; Buckley, Thomas R; Wilson, Melissa; Cheng, Yuanyuan; Miller, Hilary; Schott, Ryan K; Jordan, Melissa D; Newcomb, Richard D; Arroyo, José Ignacio; Valenzuela, Nicole; Hore, Tim A; Renart, Jaime; Peona, Valentina; Peart, Claire R; Warmuth, Vera M; Zeng, Lu; Kortschak, R Daniel; Raison, Joy M; Zapata, Valeria Velásquez; Wu, Zhiqiang; Santesmasses, Didac; Mariotti, Marco; Guigó, Roderic; Rupp, Shawn M; Twort, Victoria G; Dussex, Nicolas; Taylor, Helen; Abe, Hideaki; Bond, Donna M; Paterson, James M; Mulcahy, Daniel G.

Nature ; 584(7821): 403-409, 2020 08.

Article in English | MEDLINE | ID: mdl-32760000

3.

Publisher Correction: The tuatara genome reveals ancient features of amniote evolution.

Gemmell, Neil J; Rutherford, Kim; Prost, Stefan; Tollis, Marc; Winter, David; Macey, J Robert; Adelson, David L; Suh, Alexander; Bertozzi, Terry; Grau, José H; Organ, Chris; Gardner, Paul P; Muffato, Matthieu; Patricio, Mateus; Billis, Konstantinos; Martin, Fergal J; Flicek, Paul; Petersen, Bent; Kang, Lin; Michalak, Pawel; Buckley, Thomas R; Wilson, Melissa; Cheng, Yuanyuan; Miller, Hilary; Schott, Ryan K; Jordan, Melissa D; Newcomb, Richard D; Arroyo, José Ignacio; Valenzuela, Nicole; Hore, Tim A; Renart, Jaime; Peona, Valentina; Peart, Claire R; Warmuth, Vera M; Zeng, Lu; Kortschak, R Daniel; Raison, Joy M; Zapata, Valeria Velásquez; Wu, Zhiqiang; Santesmasses, Didac; Mariotti, Marco; Guigó, Roderic; Rupp, Shawn M; Twort, Victoria G; Dussex, Nicolas; Taylor, Helen; Abe, Hideaki; Bond, Donna M; Paterson, James M; Mulcahy, Daniel G.

Nature ; 585(7823): E3, 2020 Sep.

Article in English | MEDLINE | ID: mdl-32811988

4.

Post-transcriptional control of the essential enzyme MurF by a small regulatory RNA in Brucella abortus.

King, Kellie A; Benton, Angela H; Caudill, Mitchell T; Stoyanof, S Tristan; Kang, Lin; Michalak, Pawel; Lahmers, Kevin K; Dunman, Paul M; DeHart, Tanner G; Ahmad, Saadman S; Jutras, Brandon L; Poncin, Katy; De Bolle, Xavier; Caswell, Clayton C.

Mol Microbiol ; 121(1): 129-141, 2024 01.

Article in English | MEDLINE | ID: mdl-38082493

5.

The E2 glycoprotein holds key residues for Mayaro virus adaptation to the urban Aedes aegypti mosquito.

Cereghino, Chelsea; Roesch, Ferdinand; Carrau, Lucía; Hardy, Alexandra; Ribeiro-Filho, Helder V; Henrion-Lacritick, Annabelle; Koh, Cassandra; Marano, Jeffrey M; Bates, Tyler A; Rai, Pallavi; Chuong, Christina; Akter, Shamima; Vallet, Thomas; Blanc, Hervé; Elliott, Truitt J; Brown, Anne M; Michalak, Pawel; LeRoith, Tanya; Bloom, Jesse D; Marques, Rafael Elias; Saleh, Maria-Carla; Vignuzzi, Marco; Weger-Lucarelli, James.

PLoS Pathog ; 19(4): e1010491, 2023 04.

Article in English | MEDLINE | ID: mdl-37018377

6.

Genomic divergence and adaptive convergence in Drosophila simulans from Evolution Canyon, Israel.

Kang, Lin; Rashkovetsky, Eugenia; Michalak, Katarzyna; Garner, Harold R; Mahaney, James E; Rzigalinski, Beverly A; Korol, Abraham; Nevo, Eviatar; Michalak, Pawel.

Proc Natl Acad Sci U S A ; 116(24): 11839-11844, 2019 06 11.

Article in English | MEDLINE | ID: mdl-31127048

7.

Seasonal changes in recombination characteristics in a natural population of Drosophila melanogaster.

Aggarwal, Dau Dayal; Rybnikov, Sviatoslav; Sapielkin, Shaul; Rashkovetsky, Eugenia; Frenkel, Zeev; Singh, Manvender; Michalak, Pawel; Korol, Abraham B.

Heredity (Edinb) ; 127(3): 278-287, 2021 09.

Article in English | MEDLINE | ID: mdl-34163036

8.

CAGm: a repository of germline microsatellite variations in the 1000 genomes project.

Kinney, Nicholas; Titus-Glover, Kyle; Wren, Jonathan D; Varghese, Robin T; Michalak, Pawel; Liao, Han; Anandakrishnan, Ramu; Pulenthiran, Arichanah; Kang, Lin; Garner, Harold R.

Nucleic Acids Res ; 47(D1): D39-D45, 2019 01 08.

Article in English | MEDLINE | ID: mdl-30329086

9.

DNA sequencing of anatomy lab cadavers to provide hands-on precision medicine introduction to medical students.

Anandakrishnan, Ramu; Carpenetti, Tiffany L; Samuel, Peter; Wasko, Breezy; Johnson, Craig; Smith, Christy; Kim, Jessica; Michalak, Pawel; Kang, Lin; Kinney, Nick; Santo, Arben; Anstrom, John; Garner, Harold R; Varghese, Robin T.

BMC Med Educ ; 20(1): 437, 2020 Nov 16.

Article in English | MEDLINE | ID: mdl-33198737

10.

The Komodo dragon (Varanus komodoensis) genome and identification of innate immunity genes and clusters.

van Hoek, Monique L; Prickett, M Dennis; Settlage, Robert E; Kang, Lin; Michalak, Pawel; Vliet, Kent A; Bishop, Barney M.

BMC Genomics ; 20(1): 684, 2019 Aug 30.

Article in English | MEDLINE | ID: mdl-31470795

11.

Genomic signatures of experimental adaptive radiation in Drosophila.

Michalak, Pawel; Kang, Lin; Schou, Mads F; Garner, Harold R; Loeschcke, Volker.

Mol Ecol ; 28(3): 600-614, 2019 02.

Article in English | MEDLINE | ID: mdl-30375065

12.

Desiccation-induced changes in recombination rate and crossover interference in Drosophila melanogaster: evidence for fitness-dependent plasticity.

Aggarwal, Dau Dayal; Rybnikov, Sviatoslav; Cohen, Irit; Frenkel, Zeev; Rashkovetsky, Eugenia; Michalak, Pawel; Korol, Abraham B.

Genetica ; 147(3-4): 291-302, 2019 Aug.

Article in English | MEDLINE | ID: mdl-31240599

13.

Characterization of Three Small Proteins in Brucella abortus Linked to Fucose Utilization.

Budnick, James A; Sheehan, Lauren M; Kang, Lin; Michalak, Pawel; Caswell, Clayton C.

J Bacteriol ; 200(18)2018 09 15.

Article in English | MEDLINE | ID: mdl-29967118

14.

Unique divergence of the breast cancer 2 (BRCA2) gene in Neanderthals.

Michalak, Pawel; Kang, Lin.

Hereditas ; 155: 34, 2018.

Article in English | MEDLINE | ID: mdl-30410429

15.

Discovery of Novel Antimicrobial Peptides from Varanus komodoensis (Komodo Dragon) by Large-Scale Analyses and De-Novo-Assisted Sequencing Using Electron-Transfer Dissociation Mass Spectrometry.

Bishop, Barney M; Juba, Melanie L; Russo, Paul S; Devine, Megan; Barksdale, Stephanie M; Scott, Shaylyn; Settlage, Robert; Michalak, Pawel; Gupta, Kajal; Vliet, Kent; Schnur, Joel M; van Hoek, Monique L.

J Proteome Res ; 16(4): 1470-1482, 2017 04 07.

Article in English | MEDLINE | ID: mdl-28164707

16.

Nucleotide diversity inflation as a genome-wide response to experimental lifespan extension in Drosophila melanogaster.

Michalak, Pawel; Kang, Lin; Sarup, Pernille M; Schou, Mads F; Loeschcke, Volker.

BMC Genomics ; 18(1): 84, 2017 01 14.

Article in English | MEDLINE | ID: mdl-28088192

17.

A Test for Gene Flow among Sympatric and Allopatric Hawaiian Picture-Winged Drosophila.

Kang, Lin; Garner, Harold R; Price, Donald K; Michalak, Pawel.

J Mol Evol ; 84(5-6): 259-266, 2017 06.

Article in English | MEDLINE | ID: mdl-28492967

18.

Mapping Genomic Scaffolds to Chromosomes Using Laser Capture Microdissection in Application to Hawaiian Picture-Winged Drosophila.

Kang, Lin; George, Phillip; Price, Donald K; Sharakhov, Igor; Michalak, Pawel.

Cytogenet Genome Res ; 152(4): 204-212, 2017.

Article in English | MEDLINE | ID: mdl-29130948

19.

Transcriptomic imprints of adaptation to fresh water: parallel evolution of osmoregulatory gene expression in the Alewife.

Velotta, Jonathan P; Wegrzyn, Jill L; Ginzburg, Samuel; Kang, Lin; Czesny, Sergiusz; O'Neill, Rachel J; McCormick, Stephen D; Michalak, Pawel; Schultz, Eric T.

Mol Ecol ; 26(3): 831-848, 2017 Feb.

Article in English | MEDLINE | ID: mdl-28012221

20.

Ancient forest: keep the logging ban.

Michalak, Pawel.

Nature ; 530(7591): 419, 2016 Feb 25.

Article in English | MEDLINE | ID: mdl-26911776

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