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1.
J Org Chem ; 82(3): 1676-1687, 2017 02 03.
Article in English | MEDLINE | ID: mdl-28094530

ABSTRACT

A practical and efficient method for divergent synthesis of 3,6-disubstituted- and 3,5,6-trisubstituted-1,2,4-triazines via unexpected rhodium-catalyzed O-H insertion/rearrangement/conditions-controlled intramolecular cyclization and oxidation reaction under mild conditions has been developed. Notably, it is the first example for the synthesis of 1,2,4-triazines with different substituted-patterns via a common intermediate with excellent chemoselectivities by the reaction of N-acylhydrazones as aze-[3C] or [4C] synthons with N-sulfonyl-1,2,3-triazoles as aze-[2C] synthons. Furthermore, this method allows direct access to di(het)aryl ketone frameworks containing 1,2,4-triazine moiety for the first time, serving as a versatile building block for the synthesis of other useful heterocyclic skeletons, such as pyridine or pyridazinone-fused triazine in excellent yields.

2.
Transgenic Res ; 25(5): 649-64, 2016 10.
Article in English | MEDLINE | ID: mdl-27209317

ABSTRACT

From birth, the respiratory tract mucosa is exposed to various chemical, physical, and microbiological stress factors. Efficient defense mechanisms and strictly regulated renewal systems in the mucosa are thus required. Carbonic anhydrase VI (CA VI) is the only secreted isoenzyme of the α-CA gene family. It is transported in high concentrations in saliva and milk into the alimentary tract where it contributes to optimal pH homeostasis. Earlier study of transcriptomic responses of Car6 (-/-) mice has shown changes in the response to oxidative stress and brown fat cell differentiation in the submandibular gland. It has been suggested that CA VI delivered to the mucosal surface of the bronchiolar epithelium is an essential factor in defense and renewal of the lining epithelium. In this study, the transcriptional effects of CA VI deficiency were investigated in both trachea and lung of Car6 (-/-) mice using a cDNA microarray analysis. Functional clustering of the results indicated significant changes of gene transcription in the lower airways. The altered biological processes included antigen transport by M-cells, potassium transport, muscle contraction, and thyroid hormone synthesis. Immunohistochemical staining confirmed the absence of CA VI in the submandibular gland of Car6 (-/-) mice. Immunostaining of the trachea and lung samples revealed no differences between the knockout and wild type groups nor were any morphological changes observed. The present findings can help us to recognize novel functions for CA VI-one of the major protein constituents of saliva and milk.


Subject(s)
Carbonic Anhydrases/genetics , Gene Expression Regulation/genetics , Respiratory System/metabolism , Transcriptome/genetics , Animals , Carbonic Anhydrases/metabolism , Lung/metabolism , Mice , Mice, Knockout , Milk/enzymology , Mucous Membrane/metabolism , Oligonucleotide Array Sequence Analysis , Protein Biosynthesis/genetics , Respiratory Mucosa/metabolism , Saliva/enzymology , Submandibular Gland/metabolism , Trachea/metabolism
3.
Biopolymers ; 101(7): 769-78, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24374484

ABSTRACT

Carbonic anhydrase isoform XIV (CA XIV) is the last member of the human (h) CA family discovered so far, being localized in brain, kidneys, colon, small intestine, urinary bladder, liver, and spinal cord. It has recently been described as a possible drug target for treatment of epilepsy, some retinopathies as well as some skin tumors. Human carbonic anhydrase (hCA) XIV is a membrane-associated protein consisting of an N-terminal extracellular domain, a putative transmembrane region, and a small cytoplasmic tail. In this article, we report the expression, purification, and the crystallographic structure of the entire extracellular domain of this enzyme. The analysis of the structure revealed the typical α-CA fold, in which a 10-stranded ß-sheet forms the core of the molecule, while the comparison with all the other membrane associated isoforms (hCAs IV, IX, and XII) allowed to identify the diverse oligomeric arrangement and the sequence and structural differences observed in the region 127-136 as the main factors to consider in the design of selective inhibitors for each one of the membrane associated α-CAs.


Subject(s)
Carbonic Anhydrases/chemistry , Drug Design , Enzyme Inhibitors/chemistry , Membrane Proteins/chemistry , Amino Acid Sequence , Animals , Carbonic Anhydrases/genetics , Carbonic Anhydrases/metabolism , Chromatography, Gel , Chromatography, Liquid , Crystallography, X-Ray , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , Humans , Isoenzymes/antagonists & inhibitors , Isoenzymes/chemistry , Isoenzymes/genetics , Kinetics , Membrane Proteins/antagonists & inhibitors , Membrane Proteins/genetics , Models, Molecular , Molecular Sequence Data , Protein Structure, Secondary , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Sf9 Cells , Spectrometry, Mass, Electrospray Ionization
4.
J Biomed Sci ; 21: 82, 2014 Aug 19.
Article in English | MEDLINE | ID: mdl-25134447

ABSTRACT

BACKGROUND: Carbonic anhydrase VI (CA VI) is a secretory isozyme of the α-CA gene family. It is highly expressed in the salivary and mammary glands and secreted into saliva and milk. Although CA VI was first described as a gustatory protein, its exact functional roles have remained enigmatic. Interestingly, polymorphism of the CA6 gene was recently linked to bitter taste perception in humans. In this study, we compared the preference of Car6⁻/⁻ and wild-type mice for different taste modalities in an IntelliCage monitoring environment. Morphologies of taste buds, tongue papillae, and von Ebner's glands were evaluated by light microscopy. Cell proliferation and rate of apoptosis in tongue specimens were examined by Ki67 immunostaining and fluorescent DNA fragmentation staining, respectively. RESULTS: The behavioral follow up of the mice in an IntelliCage system revealed that Car6⁻/⁻ mice preferred 3 µM quinine (bitter) solution, whereas wild type mice preferred water. When the quinine concentration increased, both groups preferentially selected water. Histological analysis, Ki67 immunostaining and detection of apoptosis did not reveal any significant changes between tongue specimens of the knockout and wild type mice. CONCLUSIONS: Our knockout mouse model confirms that CA VI is involved in bitter taste perception. CA VI may be one of the factors which contribute to avoidance of bitter, potentially harmful, substances.


Subject(s)
Carbonic Anhydrases/metabolism , Models, Biological , Taste Buds/enzymology , Taste Perception/physiology , von Ebner Glands/enzymology , Animals , Carbonic Anhydrases/genetics , Humans , Ki-67 Antigen/genetics , Ki-67 Antigen/metabolism , Mice , Mice, Knockout , Taste Buds/cytology , von Ebner Glands/cytology
5.
Bioorg Med Chem ; 21(15): 4472-6, 2013 Aug 01.
Article in English | MEDLINE | ID: mdl-23790722

ABSTRACT

The protozoan pathogen Trypanosoma cruzi, the causative agent of Chagas disease, encodes an α-class carbonic anhydrase (CA, EC 4.2.1.1), TcCA, which was recently shown to be crucial for its life cycle. Thiols, a class of strong TcCA inhibitors, were also shown to block the growth of the pathogen in vitro. Here we report the inhibition of TcCA by inorganic and complex anions and other molecules interacting with zinc proteins, such as sulfamide, sulfamic acid, phenylboronic/arsonic acids. TcCA was inhibited in the low micromolar range by iodide, cyanate, thiocyanate, hydrogensulfide and trithiocarbonate (KIs in the range of 44-93 µM), but the best inhibitor was diethyldithiocarbamate (KI=5 µM). Sulfamide showed an inhibition constant of 120 µM, but sulfamic acid was much less effective (KI of 10.6 mM). The discovery of diethyldithiocarbamate as a low micromolar TcCA inhibitor may be useful to detect leads for developing anti-Trypanosoma agents with a diverse mechanism of action compared to clinically used drugs (benznidazole, nifurtimox) for which significant resistance emerged.


Subject(s)
Carbonic Anhydrase Inhibitors/chemistry , Carbonic Anhydrase Inhibitors/pharmacology , Trypanosoma cruzi/drug effects , Trypanosoma cruzi/enzymology , Amino Acid Sequence , Animals , Anions/chemistry , Anions/pharmacology , Chagas Disease/drug therapy , Chagas Disease/parasitology , Ditiocarb/pharmacology , Humans , Mice , Molecular Sequence Data , Sequence Homology, Amino Acid , Sulfonamides/pharmacology
6.
Biochim Biophys Acta ; 1812(12): 1567-76, 2011 Dec.
Article in English | MEDLINE | ID: mdl-21945428

ABSTRACT

Carbonic anhydrase VI (CA VI), encoded by type A transcripts of the gene Car6, is a secretory product of salivary glands and is found in the enamel pellicle. Because higher caries prevalence is associated with lower salivary concentrations of CA VI in humans, we tested whether CA VI protects enamel surfaces from caries induced by Streptococcus mutans, using Car6(-/-) mice, in which salivary CA VI expression is absent. We detected aberrant Car6 type A transcripts in Car6(-/-) mice, likely targets for nonsense-mediated mRNA decay. Expression of the intracellular stress-induced isoform of CA VI encoded by type B transcripts was restricted to parotid and submandibular glands of wild type mice. The salivary function of Car6(-/-) mice was normal as assessed by the histology and protein/glycoprotein profiles of glands, salivary flow rates and protein/glycoprotein compositions of saliva. Surprisingly, total smooth surface caries and sulcal caries in Car6(-/-) mice were more than 6-fold and 2-fold lower than in wild type mice after infection with S. mutans strain UA159. Recoveries of S. mutans and total microbiota from molars were also lower in Car6(-/-) mice. To explore possible mechanisms for increased caries susceptibility, we found no differences in S. mutans adherence to salivary pellicles, in vitro. Interestingly, higher levels of Lactobacillus murinus and an unidentified Streptococcus species were cultivated from the oral microbiota of Car6(-/-) mice. Collective results suggest salivary CA VI may promote caries by modulating the oral microbiota to favor S. mutans colonization and/or by the enzymatic production of acid within plaque.


Subject(s)
Carbonic Anhydrases/genetics , Dental Caries/microbiology , Dental Plaque/microbiology , Saliva/enzymology , Streptococcal Infections/microbiology , Streptococcus mutans/isolation & purification , Animals , Bacterial Adhesion , Carbonic Anhydrases/metabolism , Dental Caries/pathology , Durapatite , Female , Gene Deletion , Male , Metagenome , Mice , Mice, Inbred C57BL , Mice, Knockout , Molar/microbiology , Molar/pathology , RNA, Ribosomal, 16S/genetics , Salivary Glands/microbiology , Streptococcal Infections/pathology , Streptococcus mutans/genetics , Transcription, Genetic
7.
Transgenic Res ; 21(1): 163-76, 2012 Feb.
Article in English | MEDLINE | ID: mdl-21547424

ABSTRACT

Preliminary observations have suggested mild behavioral changes and a morphological disruption of brain histology in 1.5-year-old carbonic anhydrase IX (CA IX)-deficient (Car9 (-/-)) mice. These findings led us to design a 1-year follow-up study in which the behavior and brain histology of Car9 (-/-) and wild-type mice were monitored. Morphological analysis revealed vacuolar degenerative changes in the brains of Car9 (-/-) mice. The changes became visible at the age of eight to ten months. Behavioral tests showed that the Car9 (-/-) mice exhibited abnormal locomotor activity and poor performance in a memory test. To further identify the transcriptomic responses to CA IX deficiency in the brain, genome-wide cDNA microarray analyses were performed. Thirty-one and 37 genes were significantly up- or down-regulated, respectively, in the brain of Car9 (-/-) mice compared to the wild-type mice. Functional annotation revealed that the genes with increased expression were involved in several processes, such as RNA metabolism, and the genes with reduced expression were implicated in other important processes, including the regulation of cellular ion homeostasis. Notably, the biological processes "behavior" and "locomotory behavior" were the two prominent terms overrepresented among the down-regulated genes, which is consistent with the behavioral phenotype. These results suggest that CA IX may directly or indirectly play novel functions in brain tissue. Furthermore, the brain phenotype of Car9 (-/-) mice seems to be age-dependent. The results indicate that the functional changes precede the microscopic alterations in the brains of Car9 (-/-) mice.


Subject(s)
Brain/pathology , Brain/physiology , Carbonic Anhydrases/genetics , Animals , Behavior, Animal , Carbonic Anhydrase IX , Follow-Up Studies , Gene Expression Regulation , Mice , Mice, Mutant Strains , Oligonucleotide Array Sequence Analysis , Phenotype
8.
Proc Natl Acad Sci U S A ; 106(38): 16233-8, 2009 Sep 22.
Article in English | MEDLINE | ID: mdl-19805286

ABSTRACT

Carbonic anhydrase (CA) IX is a plasma membrane-associated member of the alpha-CA enzyme family, which is involved in solid tumor acidification. It is a marker of tumor hypoxia and a prognostic factor in several human cancers. An aberrant increase in CA IX expression in chronic hypoxia and during development of various carcinomas contributes to tumorigenesis through at least two mechanisms: pH regulation and cell adhesion control. Here we report the X-ray structure of the catalytic domain of CA IX in complex with a classical, clinically used sulfonamide inhibitor, acetazolamide. The structure reveals a typical alpha-CA fold, which significantly differs from the other CA isozymes when the protein quaternary structure is considered. Thus, two catalytic domains of CA IX associate to form a dimer, which is stabilized by the formation of an intermolecular disulfide bond. The active site clefts and the PG domains are located on one face of the dimer, while the C-termini are located on the opposite face to facilitate protein anchoring to the cell membrane. A correlation between the three-dimensional structure and the physiological role of the enzyme is here suggested, based on the measurement of the pH profile of the catalytic activity for the physiological reaction, CO(2) hydration to bicarbonate and protons. On the basis of the structural differences observed between CA IX and the other membrane-associated alpha-CAs, further prospects for the rational drug design of isozyme-specific CA inhibitors are proposed, given that inhibition of this enzyme shows antitumor activity both in vitro and in vivo.


Subject(s)
Antigens, Neoplasm/chemistry , Carbonic Anhydrases/chemistry , Neoplasms/enzymology , Protein Structure, Tertiary , Amino Acid Sequence , Antigens, Neoplasm/genetics , Antigens, Neoplasm/metabolism , Bicarbonates/chemistry , Bicarbonates/metabolism , Carbon Dioxide/chemistry , Carbon Dioxide/metabolism , Carbonic Anhydrase IX , Carbonic Anhydrases/genetics , Carbonic Anhydrases/metabolism , Catalytic Domain , Crystallization , Crystallography, X-Ray , Disulfides/chemistry , Drug Design , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , Humans , Hydrogen-Ion Concentration , Kinetics , Models, Molecular , Molecular Sequence Data , Neoplasms/drug therapy , Neoplasms/pathology , Protein Conformation , Protein Multimerization , Protons , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Structure-Activity Relationship , Water/chemistry , Water/metabolism
9.
Transgenic Res ; 20(3): 675-98, 2011 Jun.
Article in English | MEDLINE | ID: mdl-20835760

ABSTRACT

Carbonic anhydrase VI (CAVI) is the only secreted isozyme of the α-carbonic anhydrase family, which catalyzes the reversible reaction [Formula in text]. It appears that CAVI protects teeth and gastrointestinal mucosa by neutralizing excess acidity. However, the evidence for this physiological function is limited, and CAVI may have additional functions that have yet to be discovered. To explore the functions of CAVI more fully, we generated Car6 (-/-) mice and analyzed Car6 (-/-) mutant phenotypes. We also examined transcriptomic responses to CAVI deficiency in the submandibular gland, stomach, and duodenum of Car6 (-/-) mice. Car6 (-/-) mice were viable and fertile and had a normal life span. Histological analyses indicated a greater number of lymphoid follicles in the small intestinal Peyer's patches. A total of 94, 56, and 127 genes were up- or down-regulated in the submandibular gland, stomach, and duodenum of Car6 (-/-) mice, respectively. The functional clustering of differentially expressed genes revealed a number of altered biological processes. In the duodenum, the significantly affected biological pathways included the immune system process and retinol metabolic processes. The response to oxidative stress and brown fat cell differentiation changed remarkably in the submandibular gland. Notably, the submandibular gland, stomach, and duodenum shared one important transcriptional susceptibility pathway: catabolic process. Real-time PCR confirmed an altered expression in 14 of the 16 selected genes. The generation and of Car6 (-/-) mice and examination of the effects of CAVI deficiency on gene transcription have revealed several affected clusters of biological processes, which implicate CAVI in catabolic processes and the immune system response.


Subject(s)
Carbonic Anhydrases/deficiency , Duodenum/metabolism , Gastric Mucosa/metabolism , Gene Expression Profiling , Submandibular Gland/metabolism , Animals , Mice , Microarray Analysis , Oligonucleotide Array Sequence Analysis , Reverse Transcriptase Polymerase Chain Reaction
10.
BMC Clin Pathol ; 8: 2, 2008 Feb 18.
Article in English | MEDLINE | ID: mdl-18282279

ABSTRACT

BACKGROUND: S100P is a Ca2+ binding protein overexpressed in a variety of cancers, and thus, has been considered a potential tumor biomarker. Very little has been studied about its normal expression and functions. METHODS: We examined S100P expression in normal human tissues by quantitative reverse transcription polymerase chain reaction and immunohistochemistry. S100P protein expression was also studied in a series of tumors, consisting of 74 ovarian, 11 pancreatic, 56 gastric, 57 colorectal, 89 breast and 193 prostate carcinomas using a novel anti-S100P monoclonal antibody. RESULTS: Among the normal tissues, the highest S100P mRNA levels were observed in the placenta and esophagus. Moderate signals were also detected in the stomach, duodenum, large intestine, prostate and leukocytes. At the protein level, the highest reactions for S100P were seen in the placenta and stomach. Immunostaining of tumor specimens showed that S100P protein is expressed in all the tumor categories included in the study, being most prevalent in gastric tumors. CONCLUSION: Based on our observations, S100P is widely expressed in both normal and malignant tissues. The high expression in some tumors suggests that it may represent a potential target molecule for future diagnostic and therapeutic applications.

11.
BMC Mol Biol ; 8: 22, 2007 Mar 16.
Article in English | MEDLINE | ID: mdl-17362527

ABSTRACT

BACKGROUND: Carbonic anhydrases (CAs) are physiologically important enzymes which participate in many gastrointestinal processes such as acid and bicarbonate secretion and metabolic pathways including gluconeogenesis and ureagenesis. The genomic data suggests that there are thirteen enzymatically active members of the mammalian CA isozyme family. In the present study, we systematically examined the mRNA expression levels of all known CA isozymes by quantitative real-time PCR in eight tissues of the digestive system of male and female mice. RESULTS: The CAs expressed in all tissues were Car5b, Car7, and Car15, among which Car5b showed moderate and Car7 and Car15 extremely low expression levels. Car3, Car12, Car13, and Car14 were detected in seven out of eight tissues and Car2 and Car4 were expressed in six tissues. Importantly, Car1, Car3, and Car13 showed very high expression levels in certain tissues as compared to the other CAs, suggesting that these low activity isozymes may also participate in physiological processes other than CA catalysis and high expression levels are required to fulfil their functions in the body. CONCLUSION: A comprehensive mRNA expression profile of the 13 enzymatically active CAs in the murine gastrointestinal tract was produced in the present study. It contributes to a deeper understanding of the distribution of CA isozymes and their potential roles in the mouse digestive system.


Subject(s)
Carbonic Anhydrases/metabolism , Digestive System/metabolism , RNA, Messenger/metabolism , Animals , Carbonic Anhydrases/genetics , Female , Isoenzymes/metabolism , Male , Mice , Molecular Sequence Data , Organ Specificity
12.
J Histochem Cytochem ; 55(1): 85-96, 2007 Jan.
Article in English | MEDLINE | ID: mdl-16982849

ABSTRACT

Juvenile hemochromatosis is a severe hereditary iron overload disease caused by mutations in the HJV (hemojuvelin) and HAMP (hepcidin) genes. Hepcidin is an important iron regulatory hormone, and hemojuvelin may regulate hepcidin synthesis via the multifunctional membrane receptor neogenin. We explored the expression of murine hemojuvelin and neogenin mRNAs and protein. Real-time RT-PCR analysis of 18 tissues from male and female mice was performed to examine the mRNA expression profiles. To further study protein expression and localization we used immunohistochemistry on several tissues from three mouse strains. Mouse Neo1 mRNA was detectable in the 18 tissues tested, the highest signals being evident in the ovary, uterus, and testis. Neogenin protein was observed in the brain, skeletal muscle, heart, liver, stomach, duodenum, ileum, colon, renal cortex, lung, testis, ovary, oviduct, and uterus. The spleen, thymus, and pancreas were negative for neogenin. The highest signals for Hjv mRNA were detectable in the skeletal muscle, heart, esophagus, and liver. The results indicate that Neo1 mRNA is widely expressed in both male and female mouse tissues with the highest signals detected in the reproductive system. Moreover, Hjv and Neo1 mRNAs are simultaneously expressed in skeletal muscle, heart, esophagus, and liver.


Subject(s)
Membrane Proteins/biosynthesis , Animals , Female , GPI-Linked Proteins , Hemochromatosis Protein , Immunohistochemistry , Male , Membrane Proteins/genetics , Mice , Organ Specificity , RNA, Messenger/biosynthesis , Reverse Transcriptase Polymerase Chain Reaction
13.
Exp Mol Med ; 49(5): e334, 2017 05 19.
Article in English | MEDLINE | ID: mdl-28524177

ABSTRACT

Skin wound closure occurs when keratinocytes migrate from the edge of the wound and re-epithelialize the epidermis. Their migration takes place primarily before any vascularization is established, that is, under hypoxia, but relatively little is known regarding the factors that stimulate this migration. Hypoxia and an acidic environment are well-established stimuli for cancer cell migration. The carbonic anhydrases (CAs) contribute to tumor cell migration by generating an acidic environment through the conversion of carbon dioxide to bicarbonate and a proton. On this basis, we explored the possible role of CAs in tissue regeneration using mouse skin wound models. We show that the expression of mRNAs encoding CA isoforms IV and IX are increased (~25 × and 4 ×, respectively) during the wound hypoxic period (days 2-5) and that cells expressing CAs form a band-like structure beneath the migrating epidermis. RNA-Seq analysis suggested that the CA IV-specific signal in the wound is mainly derived from neutrophils. Due to the high level of induction of CA IV in the wound, we treated skin wounds locally with recombinant human CA IV enzyme. Recombinant CA IV significantly accelerated wound re-epithelialization. Thus, CA IV could contribute to wound healing by providing an acidic environment in which the migrating epidermis and neutrophils can survive and may offer novel opportunities to accelerate wound healing under compromised conditions.


Subject(s)
Carbonic Anhydrases/metabolism , Re-Epithelialization , Skin/injuries , Animals , Carbonic Anhydrases/pharmacology , Cell Hypoxia , Humans , Male , Mice , Mice, Inbred BALB C , Protein Isoforms/genetics , Protein Isoforms/metabolism , Skin/drug effects , Skin/metabolism
14.
J Med Chem ; 58(21): 8564-72, 2015 Nov 12.
Article in English | MEDLINE | ID: mdl-26497049

ABSTRACT

New 1,1'-biphenylsulfonamides were synthesized and evaluated as inhibitors of the ubiquitous human carbonic anhydrase isoforms I, II, IX, XII, and XIV using acetazolamide (AAZ) as reference compound. The sulfonamides 1-21 inhibited all the isoforms, with Ki values in the nanomolar range of concentration, and were superior to AAZ against all of them. X-ray crystallography and molecular modeling studies on the adducts that compound 20, the most potent hCA XIV inhibitor of the series (Ki = 0.26 nM), formed with the five hCAs, provided insight into the molecular determinants responsible for the high affinity of this molecule toward the target enzymes. The results pave the way to the development of 1.1'-biphenylsulfonamides as a new class of highy potent hCA XIV inhibitors.


Subject(s)
Biphenyl Compounds/chemistry , Biphenyl Compounds/pharmacology , Carbonic Anhydrase Inhibitors/chemistry , Carbonic Anhydrase Inhibitors/pharmacology , Carbonic Anhydrases/metabolism , Sulfonamides/chemistry , Sulfonamides/pharmacology , Crystallography, X-Ray , Humans , Models, Molecular , Structure-Activity Relationship
15.
PLoS One ; 10(7): e0134263, 2015.
Article in English | MEDLINE | ID: mdl-26218428

ABSTRACT

Carbonic anhydrase related proteins (CARPs) X and XI are highly conserved across species and are predominantly expressed in neural tissues. The biological role of these proteins is still an enigma. Ray-finned fish have lost the CA11 gene, but instead possess two co-orthologs of CA10. We analyzed the expression pattern of zebrafish ca10a and ca10b genes during embryonic development and in different adult tissues, and studied 61 CARP X/XI-like sequences to evaluate their phylogenetic relationship. Sequence analysis of zebrafish ca10a and ca10b reveals strongly predicted signal peptides, N-glycosylation sites, and a potential disulfide, all of which are conserved, suggesting that all of CARP X and XI are secretory proteins and potentially dimeric. RT-qPCR showed that zebrafish ca10a and ca10b genes are expressed in the brain and several other tissues throughout the development of zebrafish. Antisense morpholino mediated knockdown of ca10a and ca10b showed developmental delay with a high rate of mortality in larvae. Zebrafish morphants showed curved body, pericardial edema, and abnormalities in the head and eye, and there was increased apoptotic cell death in the brain region. Swim pattern showed abnormal movement in morphant zebrafish larvae compared to the wild type larvae. The developmental phenotypes of the ca10a and ca10b morphants were confirmed by inactivating these genes with the CRISPR/Cas9 system. In conclusion, we introduce a novel zebrafish model to investigate the mechanisms of CARP Xa and CARP Xb functions. Our data indicate that CARP Xa and CARP Xb have important roles in zebrafish development and suppression of ca10a and ca10b expression in zebrafish larvae leads to a movement disorder.


Subject(s)
Embryo, Nonmammalian/abnormalities , Embryonic Development/genetics , Gene Expression Regulation, Developmental , Morpholinos/pharmacology , Oligonucleotides, Antisense/pharmacology , Zebrafish Proteins/antagonists & inhibitors , Zebrafish/embryology , Animals , Apoptosis , Gene Knockdown Techniques , Larva/genetics , Larva/growth & development , Phylogeny , Swimming , Teratogenesis/genetics , Zebrafish/genetics , Zebrafish Proteins/genetics
16.
Yi Chuan Xue Bao ; 29(10): 871-4, 2002 Oct.
Article in Zh | MEDLINE | ID: mdl-12561470

ABSTRACT

A novel expressed sequence tag (ESThp9-1, GenBank accession number: B1596262) was isolated from pig skeletal muscular tissue by using the mRNA differential display technique. BLAST analysis revealed that the 196 bp long EST (ESThp9-1) was not homologous to any of the known porcine genes in the database but similar to rat U3A small nuclear RNA (87% identity over 93 nucleotides) and mouse U3B.4 small nuclear RNA (85% identity over 96 nucleotides). Semi-quantitative reverse transcription polymerase chain reaction indicated that EST9hp-1 was expressed in most of tissue of the pig. ESThp9-1 was physically mapped on sus scrofa chromosome 12q1.1-q1.5 and linked with microsatellite S0090 by using somatic cell hybrid panel and radiation hybrid panel analysis. According to the homologous information and result of physical mapping, ESThp9-1 was presumed to be one member of the porcine U3 gene family.


Subject(s)
Expressed Sequence Tags , Muscle, Skeletal/metabolism , Swine/genetics , Animals , Chromosome Mapping , Chromosomes, Mammalian/genetics , Gene Expression , RNA, Messenger/genetics , RNA, Messenger/isolation & purification , RNA, Messenger/metabolism , Reverse Transcriptase Polymerase Chain Reaction
17.
Yi Chuan ; 25(2): 163-7, 2003 Mar.
Article in Zh | MEDLINE | ID: mdl-15639845

ABSTRACT

Adipose tissue triacylglycerols are the quantitatively most important source of stored energy in animals. Hormone-sensitive lipase encoded by hormone-sensitive lipase gene (Hsl) is a multifunctional enzyme that catalyzes the hydrolysis of triacylglycerol stored in adipose tissue and cholesterol esters in the adrenals, ovaries, testes and macrophages. Using pig Hsl gene inserted into pBS labeled by the radioactive isotope and the digoxigenin as the probes respectively one band, 11.5kb, has been shown to hybridized with total DNA of rice field eel digested with Pst I by Southern blotting and Hsl gene has been assigned to metaphase chromosome 5, at the position of 78.35+/-1.26 from the centromere in rice field eel by fluorescent in situ hybridization (FISH). The mapping results are corresponding to that of "specific-chromosomal DNA pool" obtained by chromosome microisolation used to map gene and the mapping result is more accurate. The results of the study further illustrate the importance of the presence of Hsl gene in rice field eel genome and provide the first FISH mapping data for rice field eel chromosome 5. The current studies would advance the addition of known genetic markers and the construction of high resolution genetic map in rice field eel genome.

18.
Brain Res ; 1543: 28-37, 2014 Jan 16.
Article in English | MEDLINE | ID: mdl-24275196

ABSTRACT

Carbonic anhydrases (CAs) comprise a family of zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide. CAs contribute to a myriad of physiological processes, including pH regulation, anion transport and water balance. To date, 16 known members of the mammalian alpha-CA family have been identified. Given that the catalytic family members share identical reaction chemistry, their physiologic roles are influenced greatly by their tissue and sub-cellular locations. CAVI is the lone secreted CA and exists in both saliva and the gastrointestinal mucosa. An alternative, stress-inducible isoform of CAVI (CAVI-b) has been shown to be expressed from a cryptic promoter that is activated by the CCAAT/Enhancer-Binding Protein Homologous Protein (CHOP). The CAVI-b isoform is not secreted and is currently of unknown physiological function. Here we use neuronal models, including a model derived using Car6 and CHOP gene ablations, to delineate a role for CAVI-b in ischemic protection. Our results demonstrate that CAVI-b expression, which is increased through CHOP-signaling in response to unfolded protein stress, is also increased by oxygen-glucose deprivation (OGD). While enforced expression of CAVI-b is not sufficient to protect against ischemia, CHOP regulation of CAVI-b is necessary for adaptive changes mediated by BDNF that reduce subsequent ischemic damage. These results suggest that CAVI-b comprises a necessary component of a larger adaptive signaling pathway downstream of CHOP.


Subject(s)
Brain-Derived Neurotrophic Factor/pharmacology , Carbonic Anhydrases/metabolism , Cell Hypoxia/drug effects , Gene Expression Regulation/radiation effects , Transcription Factor CHOP/metabolism , Analysis of Variance , Animals , Carbonic Anhydrases/deficiency , Cell Differentiation , Cells, Cultured , Embryo, Mammalian , Gene Expression Regulation/drug effects , Gene Expression Regulation/genetics , Glucose/deficiency , L-Lactate Dehydrogenase/metabolism , Mesencephalon/cytology , Mice , Mice, Inbred C57BL , Mice, Knockout , Neural Stem Cells/drug effects , Neural Stem Cells/metabolism , Protein Isoforms/genetics , Protein Isoforms/metabolism , Transcription Factor CHOP/genetics
19.
J Med Chem ; 57(2): 298-308, 2014 Jan 23.
Article in English | MEDLINE | ID: mdl-24299463

ABSTRACT

Today, there are approximately 8 million cases of Chagas disease in the southern cone of South America alone, and about 100 million people are living with the risk of becoming infected. The present pharmacotherapy is sometimes ineffective and has serious side effects. Here, we report a series of 4,5-dihydroisoxazoles incorporating hydroxamate moieties, which act as effective inhibitors of the carbonic anhydrase (CA) from Trypanosoma cruzi (TcCA). One compound (5g) was evaluated in detail and shows promising features as an antitrypanosomal agent. Excellent values for the inhibition of growth for all three developmental forms of the parasite were observed at low concentrations of 5g (IC50 values from 7.0 to <1 µM). The compound has a selectivity index (SI) of 6.7 and no cytotoxicity to macrophage cells. Preliminary in vivo data showed that 5g reduces bloodstream parasites and that all treated mice survived; it was also more effective than the standard drug benznidazole.


Subject(s)
Carbonic Anhydrase Inhibitors/chemical synthesis , Chagas Disease/drug therapy , Hydroxamic Acids/chemical synthesis , Isoxazoles/chemical synthesis , Protease Inhibitors/chemical synthesis , Trypanocidal Agents/chemical synthesis , Animals , Carbonic Anhydrase Inhibitors/chemistry , Carbonic Anhydrase Inhibitors/pharmacology , Carbonic Anhydrases/metabolism , Cell Line, Tumor , Chagas Disease/parasitology , Drug Design , Humans , Hydroxamic Acids/chemistry , Hydroxamic Acids/pharmacology , Isoenzymes/antagonists & inhibitors , Isoenzymes/metabolism , Isoxazoles/chemistry , Isoxazoles/pharmacology , Macrophages, Peritoneal/drug effects , Macrophages, Peritoneal/parasitology , Mice , Mice, Inbred BALB C , Peptide Hydrolases/metabolism , Protease Inhibitors/chemistry , Protease Inhibitors/pharmacology , Structure-Activity Relationship , Trypanocidal Agents/chemistry , Trypanocidal Agents/pharmacology , Trypanosoma cruzi/drug effects , Trypanosoma cruzi/enzymology , Trypanosoma cruzi/growth & development
20.
J Med Chem ; 56(4): 1761-71, 2013 Feb 28.
Article in English | MEDLINE | ID: mdl-23391336

ABSTRACT

An α-carbonic anhydrase (CA, EC 4.2.1.1) has been identified, cloned, and characterized from the unicellular protozoan Trypanosoma cruzi, the causative agent of Chagas disease. The enzyme (TcCA) has a very high catalytic activity for the CO2 hydration reaction, being similar kinetically to the human (h) isoform hCA II, although it is devoid of the His64 proton shuttle. A large number of aromatic/heterocyclic sulfonamides and some 5-mercapto-1,3,4-thiadiazoles were investigated as TcCA inhibitors. The aromatic sulfonamides were weak inhibitors (K(I) values of 192 nM to 84 µM), whereas some heterocyclic compounds inhibited the enzyme with K(I) values in the range 61.6-93.6 nM. The thiols were the most potent in vitro inhibitors (K(I) values of 21.1-79.0 nM), and some of them also inhibited the epimastigotes growth of two T. cruzi strains in vivo.


Subject(s)
Carbonic Anhydrase Inhibitors/chemistry , Carbonic Anhydrases/genetics , Protozoan Proteins/genetics , Sulfhydryl Compounds/chemistry , Sulfonamides/chemistry , Thiadiazoles/chemistry , Trypanocidal Agents/chemistry , Trypanosoma cruzi/enzymology , Amino Acid Sequence , Carbonic Anhydrase Inhibitors/chemical synthesis , Carbonic Anhydrase Inhibitors/pharmacology , Carbonic Anhydrases/chemistry , Chagas Disease/parasitology , Cloning, Molecular , Humans , Molecular Sequence Data , Phylogeny , Protozoan Proteins/antagonists & inhibitors , Protozoan Proteins/chemistry , Structure-Activity Relationship , Sulfhydryl Compounds/chemical synthesis , Sulfhydryl Compounds/pharmacology , Sulfonamides/chemical synthesis , Sulfonamides/pharmacology , Thiadiazoles/chemical synthesis , Thiadiazoles/pharmacology , Trypanocidal Agents/chemical synthesis , Trypanocidal Agents/pharmacology , Trypanosoma cruzi/drug effects
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