Development and validation of a functional co-dominant SNP marker for the photoperiod thermo-sensitive genic male sterility pms3 (p/tms12-1) gene in rice.

The fertility conversion of photoperiod thermo-sensitive genic male sterility (P/TGMS) lines in rice is mostly regulated by the P/TGMS genes in different environmental conditions. A point mutation with G-C on the pms3 (p/tms12-1) gene regulates the pollen fertility of Nongken58S and a large amount of Nongken58S-derived lines. In this study, we developed and designed a functional co-dominant marker according to the SNP loci for the pms3 (p/tms12-1) gene. We can differentiate the SNP loci in pms3 (p/tms12-1) gene from another TGMS lines and inbred cultivars using the dpms3-54 marker. The results showed that 376 bp band was detected in the homozygous genotype for pms3 (p/tms12-1), while 359 bp band was detected in the homozygous genotype for non-pms3 (p/tms12-1), two bands with 376 and 359 bp were detected in the heterozygous genotype. The dpms3-54 marker can be used to test the purity of two-line hybrid rice seeds and to divide each of F1 plant into homozygous and heterozygous genotypes at the seedling stage. Thus, this study provide a useful functional marker to detect pms3 (p/tms12-1) gene in different genetic resources and populations, which can be applied to the development and breeding of P/TGMS lines in two-line hybrid rice system with marker-assisted selection.

Quantitative trait locus analysis and fine mapping of the qPL6 locus for panicle length in rice.

KEY MESSAGE: Two QTLs were identified to control panicle length in rice backcross lines, and one QTL qPL6 was finely mapped with potential in high yield breeding. Panicle length (PL) is the key determinant of panicle architecture in rice, and strongly affects yield components, such as grain number per panicle. However, this trait has not been well studied genetically nor its contribution to yield improvement. In this study, we performed quantitative trait locus (QTL) analysis for PL in four backcross populations derived from the cross of Nipponbare (japonica) and WS3 (indica), a new plant type (NPT) variety. Two QTLs were identified on chromosome 6 and 8, designated as qPL6 and qPL8, respectively. Near-isogenic lines (NILs) were developed to evaluate their contribution to important agronomic traits. We found that qPL6 and qPL8 had additive effects on PL trait. For the qPL6 locus, the WS3 allele also increased panicle primary and secondary branches and grain number per panicle. Moreover, this allele conferred wide and strong culms, a character of lodging resistance. By analyzing key recombinants in two steps, the qPL6 locus was finely mapped to a 25-kb interval, and 3 candidate genes were identified. According to the single nucleotide polymorphisms (SNPs) within candidate genes, 5 dCaps markers were designed and used to get haplotypes of 96 modern Chinese varieties, which proved that qPL6 locus is differentiated between indica and temperate japonica varieties. Taken together, the superior qPL6 allele can be applied in rice breeding programs for large sink size, particularly for japonica varieties that originally lack the allele.

Lower Extremity Joint Angle Tracking with Wireless Ultrasonic Sensors during a Squat Exercise.

This paper presents an unrestrained measurement system based on a wearable wireless ultrasonic sensor network to track the lower extremity joint and trunk kinematics during a squat exercise with only one ultrasonic sensor attached to the trunk. The system consists of an ultrasound transmitter (mobile) and multiple receivers (anchors) whose positions are known. The proposed system measures the horizontal and vertical displacement, together with known joint constraints, to estimate joint flexion/extension angles using an inverse kinematic model based on the damped least-squares technique. The performance of the proposed ultrasonic measurement system was validated against a camera-based tracking system on eight healthy subjects performing a planar squat exercise. Joint angles estimated from the ultrasonic system showed a root mean square error (RMSE) of 2.85° ± 0.57° with the reference system. Statistical analysis indicated great agreements between these two systems with a Pearson's correlation coefficient (PCC) value larger than 0.99 for all joint angles' estimation. These results show that the proposed ultrasonic measurement system is useful for applications, such as rehabilitation and sports.

BENT UPPERMOST INTERNODE1 encodes the class II formin FH5 crucial for actin organization and rice development.

The actin cytoskeleton is an important regulator of cell expansion and morphogenesis in plants. However, the molecular mechanisms linking the actin cytoskeleton to these processes remain largely unknown. Here, we report the functional analysis of rice (Oryza sativa) FH5/BENT UPPERMOST INTERNODE1 (BUI1), which encodes a formin-type actin nucleation factor and affects cell expansion and plant morphogenesis in rice. The bui1 mutant displayed pleiotropic phenotypes, including bent uppermost internode, dwarfism, wavy panicle rachis, and enhanced gravitropic response. Cytological observation indicated that the growth defects of bui1 were caused mainly by inhibition of cell expansion. Map-based cloning revealed that BUI1 encodes the class II formin FH5. FH5 contains a phosphatase tensin-like domain at its amino terminus and two highly conserved formin-homology domains, FH1 and FH2. In vitro biochemical analyses indicated that FH5 is capable of nucleating actin assembly from free or profilin-bound monomeric actin. FH5 also interacts with the barbed end of actin filaments and prevents the addition and loss of actin subunits from the same end. Interestingly, the FH2 domain of FH5 could bundle actin filaments directly and stabilize actin filaments in vitro. Consistent with these in vitro biochemical activities of FH5/BUI1, the amount of filamentous actin decreased, and the longitudinal actin cables almost disappeared in bui1 cells. The FH2 or FH1FH2 domains of FH5 could also bind to and bundle microtubules in vitro. Thus, our study identified a rice formin protein that regulates de novo actin nucleation and spatial organization of the actin filaments, which are important for proper cell expansion and rice morphogenesis.

Fine mapping and candidate gene analysis of the novel thermo-sensitive genic male sterility tms9-1 gene in rice.

KEY MESSAGE: Fine mapping of the novel thermo-sensitive genic male sterility locus tms9 - 1 in the traditional TGMS line HengnongS-1 revealed that the MALE STERILITY1 homolog OsMS1 is the candidate gene. Photoperiod-thermo-sensitive genic male sterility (P/TGMS) has been widely used in the two-line hybrid rice breeding system. HengnongS-1 is one of the oldest TGMS lines and is often used in indica two-line breeding programs in China. In this study, our genetic analysis showed that the TGMS gene in HengnongS-1 was controlled by a single recessive gene that was non-allelic with the other TGMS loci identified, including C815S, Zhu1S and Y58S. Using SSR markers and bulked segregant analysis, we located the TGMS locus on chromosome 9 and named the gene tms9-1. Fine mapping further narrowed the tms9-1 loci to a 162 kb interval between two dCAPS markers. Sequence analysis revealed that a T to C substitution results in an amino acid change in the tms9-1 candidate gene (Os09g27620) in HengnongS-1 as compared to Minghui63. Sequencing of other rice accessions, including six P/TGMS lines, seven indica varieties and nine japonica varieties, showed that this SNP was exclusive to HengnongS-1. With multiple sequence alignment and expression pattern analyses, the rice MALE STERILITY1 homolog OsMS1 gene was identified as the candidate gene for tms9-1. Therefore, our study identified a novel TGMS locus and will facilitate the functional identification of the tms9-1 gene. Moreover, the markers linked to the tms9-1 gene will provide useful tools for the development of new TGMS lines by marker-assisted selection in two-line hybrid rice breeding programs.

Estimation of spatial-temporal gait parameters using a low-cost ultrasonic motion analysis system.

In this paper, a low-cost motion analysis system using a wireless ultrasonic sensor network is proposed and investigated. A methodology has been developed to extract spatial-temporal gait parameters including stride length, stride duration, stride velocity, stride cadence, and stride symmetry from 3D foot displacements estimated by the combination of spherical positioning technique and unscented Kalman filter. The performance of this system is validated against a camera-based system in the laboratory with 10 healthy volunteers. Numerical results show the feasibility of the proposed system with average error of 2.7% for all the estimated gait parameters. The influence of walking speed on the measurement accuracy of proposed system is also evaluated. Statistical analysis demonstrates its capability of being used as a gait assessment tool for some medical applications.

Assessment of Foot Trajectory for Human Gait Phase Detection Using Wireless Ultrasonic Sensor Network.

This paper presents a new highly accurate gait phase detection system using wearable wireless ultrasonic sensors, which can be used in gait analysis or rehabilitation applications. The gait phase detection system uses the foot displacement information during walking to extract the following gait phases: heel-strike, heel-off, toe-off, and mid-swing. The displacement of foot-mounted ultrasonic sensor is obtained from several passive anchors placed at known locations by employing local spherical positioning technique, which is further enhanced by the combination of recursive Newton-Gauss method and Kalman Filter. The algorithm performance is examined by comparing with a commercial optical motion tracking system with ten healthy subjects and two foot injured subjects. Accurate estimates of gait cycle (with an error of -0.02 ±0.01 s), stance phase(with an error of 0.04±0.03 s), and swing phase (with an error of -0.05±0.03 s) compared to the reference system are obtained. We have also investigated the influence of walking velocities on the performance of the proposed gait phase detection algorithm. Statistical analysis shows that there is no significant difference between both systems during different walking speeds. Moreover, we have tested and discussed the possibility of the proposed system for clinical applications by analyzing the experimental results for both healthy and injured subjects. The experiments show that the estimated gait phases have the potential to become indicators for sports and rehabilitation engineering.

Ambulatory measurement of three-dimensional foot displacement during treadmill walking using wearable wireless ultrasonic sensor network.

Techniques that could be used to monitor human motion precisely are helpful in various applications such as rehabilitation, gait analysis, and athletic performance analysis. This paper focuses on the 3-D foot trajectory measurements based on a wearable wireless ultrasonic sensor network. The system consists of an ultrasonic transmitter (mobile) and several receivers (anchors) with fixed known positions. In order not to restrict the movement of subjects, a radio frequency (RF) module is used for wireless data transmission. The RF module also provides the synchronization clock between mobile and anchors. The proposed system measures the time-of-arrival (TOA) of the ultrasonic signal from mobile to anchors. Together with the knowledge of the anchor's position, the absolute distance that the signal travels can be computed. Then, the range information defines a circle centered at this anchor with radius equal to the measured distance, and the mobile resides within the intersections of several such circles. Based on the TOA-based tracking technique, the 3-D foot trajectories are validated against a camera-based motion capture system for ten healthy subjects walking on a treadmill at slow, normal, and fast speeds. The experimental results have shown that the ultrasonic system has sufficient accuracy of net root-mean-square error ( 4.2 cm) for 3-D displacement, especially for foot clearance with accuracy and standard deviation ( 0.62 ±7.48 mm) compared to the camera-based motion capture system. The small form factor and lightweight feature of the proposed system make it easy to use. Such a system is also much lower in cost compared to the camera-based tracking system.

A wearable wireless ultrasonic sensor network for human arm motion tracking.

This paper introduces a novel method for arm flexion/extension angles measurement using wireless ultrasonic sensor network. The approach uses unscented Kalman filter and D-H kinematical chain model to retrieve the joint angles. This method was experimentally validated by calculating the 2-dimensional wrist displacements from one mobile, placed on the point of subject's wrist, and four anchors. The performance of the proposed ultrasonic motion analysis system was bench-marked by commercial camera motion capture system. The experimental results demonstrate that a favorable performance of the proposed system in the estimation of upper limb motion. The proposed system is wireless, easy to wear, to use and much cheaper than current camera system. Thus, it has the potential to become a new and useful tool for routine clinical assessment of human motion.

Ambulatory measurement of foot kinematics using wearable ultrasonic sensors.

In this paper, an ultrasonic-based system for foot parameters measurement has been proposed and investigated. An extended Kalman filtering-based methodology has been developed to extract foot parameters including step length, stride length and cycle time from horizontal displacement during walking. The system comprises of one ultrasonic transmitter (mobile) and four ultrasonic receivers (anchors) with fixed known positions. A Radio Frequency (RF) module is used in our system not only to provide synchronization clock between the mobile and anchors, but also to transmit collected data wirelessly to reduce the wires used. To evaluate the performance of the proposed system, the 2-dimensional foot displacement and the foot parameters were measured and validated against the reference camera motion capture system. These experiment results demonstrate the capability of the proposed system being used as a gait analysis tool for rehabilitation and other medical applications.

A novel approach to joint flexion/extension angles measurement based on wearable UWB radios.

In this paper, a new method for measuring and monitoring human body joint angles, which uses wearable ultrawideband (UWB) transceivers mounted on body segments, is proposed and investigated. The model is based on providing a high ranging accuracy (intersensor distance) between a pair of transceivers placed on the adjacent segments of the joint center of rotation. The measured distance is then used to compute the joint angles based on the law of cosines. The performance of the method was compared with a flexible goniometer by simultaneously measuring joint flexion-extension angles at different angular velocities, ranging between 8 and 90(°) /s. The measurement errors were evaluated by the average differences between two sets of data (ranging from 0.8(°) for slow movement to 2.8(°) for fast movement), by standard deviation (ranging from 1.2(°) to 4.2(°) for various movement speeds) and by the Pearson correlation coefficient (greater than 0.99) which demonstrates the very good performance of the UWB-based approach. The experimental results have shown that the system has sufficient accuracy for clinical applications, such as rehabilitation.

Marker-free, tissue-specific expression of Cry1Ab as a safe transgenic strategy for insect resistance in rice plants.

BACKGROUND: Rice is the major food resource for nearly half of the global population; however, insect infestation could severely affect the production of this staple food. To improve rice insect resistance and reduce the levels of Bt toxin released into the environment, the Cry1Ab gene was conjugated to the rice rbcS promoter to express Bt toxin in specific tissues of transgenic plants. RESULTS: Eight marker-free, T(2) lines were separated from the T(0) cotransformants. Using RT-PCR, high levels of Cry1Ab expression were detected in the leaf but not in the seed. The Cry1Ab protein level ranged from 1.66 to 3.31 µg g(-1) in the leaves of four transgenic lines, but was barely detectable in their seeds by ELISA. Bioassays showed that the mortality rate of silkworm larvae feeding on mulberry leaves dipped in transgenic rice flour and pollen was less than that of the positive control (KMD), and that their average weight was higher than that of KMD, suggesting that the Cry1Ab protein was not expressed in the seed and pollen. CONCLUSION: The transgene conferred a high level of resistance to insects and biosafety to the rice plants, which could be directly used in rice breeding.

Using wearable UWB radios to measure foot clearance during walking.

Foot clearance above ground is a key factor for a better understanding of the complicated relationship between falls and gait. This paper proposes a wearable system using UWB transceivers to monitor the vertical heel/toe clearance during walking. First, a pair of very small and light antennas is placed on a point approximating to the heel/toe of the foot, acting as a transmitter and receiver. Then, the reflected signal from ground is captured and propagation delay is detected using noise suppressed Modified-Phase-Only-Correlator (MPOC). The performance of the UWB-based system was compared with an ultrasound system for stationary movements. The experimental results show that an overall mean difference between these two systems is about 0.634mm with correlation coefficient value of 0.9604. The UWB-based system is then used to measure foot clearance during walking which shows promising results for gait events detection.

Measurement of knee flexion/extension angle using wearable UWB radios.

This paper proposes a wearable system using UWB transceivers to measure the knee flexion/extension angle parameter, who is known to be of clinical importance. First, a pair of very small and light antennas is placed on the adjacent segments of knee joint. Then, the range data between these two antennas is acquired using Time of Arrival (TOA) estimator. We further use the measured distance to compute the flexion/extension angle using the law of cosines. The performance of the method was compared with a flexible goniometer by simultaneously measuring knee flexion-extension angle. The experimental results show that the system has reasonable performance and has sufficient accuracy for clinical applications.