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1.
Syst Biol ; 73(3): 495-505, 2024 Sep 05.
Article in English | MEDLINE | ID: mdl-38733598

ABSTRACT

Asymmetrical rates of cladogenesis and extinction abound in the tree of life, resulting in numerous minute clades that are dwarfed by larger sister groups. Such taxa are commonly regarded as phylogenetic relicts or "living fossils" when they exhibit an ancient first appearance in the fossil record and prolonged external morphological stasis, particularly in comparison to their more diversified sister groups. Due to their special status, various phylogenetic relicts tend to be well-studied and prioritized for conservation. A notable exception to this trend is found within Amblypygi ("whip spiders"), a visually striking order of functionally hexapodous arachnids that are notable for their antenniform first walking leg pair (the eponymous "whips"). Paleoamblypygi, the putative sister group to the remaining Amblypygi, is known from Late Carboniferous and Eocene deposits but is survived by a single living species, Paracharon caecusHansen (1921), that was last collected in 1899. Due to the absence of genomic sequence-grade tissue for this vital taxon, there is no global molecular phylogeny for Amblypygi to date, nor a fossil-calibrated estimation of divergences within the group. Here, we report a previously unknown species of Paleoamblypygi from a cave site in Colombia. Capitalizing upon this discovery, we generated the first molecular phylogeny of Amblypygi, integrating ultraconserved element sequencing with legacy Sanger datasets and including described extant genera. To quantify the impact of sampling Paleoamblypygi on divergence time estimation, we performed in silico experiments with pruning of Paracharon. We demonstrate that the omission of relicts has a significant impact on the accuracy of node dating approaches that outweighs the impact of excluding ingroup fossils, which bears upon the ancestral range reconstruction for the group. Our results underscore the imperative for biodiversity discovery efforts in elucidating the phylogenetic relationships of "dark taxa," and especially phylogenetic relicts in tropical and subtropical habitats. The lack of reciprocal monophyly for Charontidae and Charinidae leads us to subsume them into one family, Charontidae, new synonymy.


Subject(s)
Fossils , Phylogeny , Animals , Spiders/classification , Spiders/genetics
2.
Mol Phylogenet Evol ; 160: 107127, 2021 07.
Article in English | MEDLINE | ID: mdl-33667632

ABSTRACT

The assembly of the Australian arid zone biota has long fascinated biogeographers. Covering over two-thirds of the continent, Australia's vast arid zone biome is home to a distinctive fauna and flora, including numerous lineages which have diversified since the Eocene. Tracing the origins and speciation history of these arid zone taxa has been an ongoing endeavour since the advent of molecular phylogenetics, and an increasing number of studies on invertebrate animals are beginning to complement a rich history of research on vertebrate and plant taxa. In this study, we apply continent-wide genetic sampling and one of the largest phylogenetic data matrices yet assembled for a genus of Australian spiders, to reconstruct the phylogeny and biogeographic history of the open-holed trapdoor spider genus Aname L. Koch, 1873. This highly diverse lineage of Australian mygalomorph spiders has a distribution covering the majority of Australia west of the Great Dividing Range, but apparently excluding the high rainfall zones of eastern Australia and Tasmania. Original and legacy sequences were obtained for three mtDNA and four nuDNA markers from 174 taxa in seven genera, including 150 Aname specimen terminals belonging to 102 species-level operational taxonomic units, sampled from 32 bioregions across Australia. Reconstruction of the phylogeny and biogeographic history of Aname revealed three radiations (Tropical, Temperate-Eastern and Continental), which could be further broken into eight major inclusive clades. Ancestral area reconstruction revealed the Pilbara, Monsoon Tropics and Mid-West to be important ancestral areas for the genus Aname and its closest relatives, with the origin of Aname itself inferred in the Pilbara bioregion. From these origins in the arid north-west of Australia, our study found evidence for a series of subsequent biome transitions in separate lineages, with at least eight tertiary incursions back into the arid zone from more mesic tropical, temperate or eastern biomes, and only two major clades which experienced widespread (primary) in situ diversification within the arid zone. Based on our phylogenetic results, and results from independent legacy divergence dating studies, we further reveal the importance of climate-driven biotic change in the Miocene and Pliocene in shaping the distribution and composition of the Australian arid zone biota, and the value of continent-wide studies in revealing potentially complex patterns of arid zone diversification in dispersal-limited invertebrate taxa.


Subject(s)
Desert Climate , Phylogeny , Phylogeography , Spiders/classification , Spiders/genetics , Animals , Australia , DNA, Mitochondrial/genetics
3.
Cladistics ; 36(6): 543-568, 2020 Dec.
Article in English | MEDLINE | ID: mdl-34618949

ABSTRACT

In the trapdoor spider genus Euoplos Rainbow & Pulleine (tribe Euoplini), it was discovered recently that two divergent lineages occur in sympatry in eastern Australia. This challenged the monogeneric classification of the tribe and, in combination with inadequate taxonomic descriptions of some species, precluded comprehensive taxonomic revision. To resolve these issues, we conducted a total-evidence cladistic analysis on a largely undescribed continental fauna-the first such analysis on a group of Australian Mygalomorphae. We combined multilocus molecular data and/or morphological and behavioural data from all known species from eastern Australia (described and undescribed), plus a subset of Western Australian species, to produce a phylogeny for the tribe. We mapped morphological/behavioural characters onto this to identify clade-specific diagnostic characters, and applied these data to a generic reclassification of the tribe. We recovered two sympatric lineages in the Euoplini (the "wafer-door" and "plug-door/palisade" lineages), and revealed the phylogenetic position of all known eastern Australian species within these. Character mapping revealed morphological and behavioural (burrow architecture) features that allow diagnosis of the lineages and clades within them. We erect a new genus, Cryptoforis gen.n., to represent the wafer-door lineage, describe the type species, Cryptoforis hughesae sp.n., and transfer two species from Euoplos to Cryptoforis: C. tasmanica (Hickman, 1928) and C. victoriensis (Main, 1995). This study resolves phylogenetic structure within the Euoplini, and characterizes clades within the tribe to facilitate future taxonomic revisions. It also demonstrates that, whereas male morphology is more informative, female morphological characters relating to genitalia and the scopulation/spination of the anterior legs display phylogenetic signal in the Euoplini, highlighting the subtle nature of informative female characters in mygalomorph spiders.

4.
Mol Phylogenet Evol ; 122: 157-165, 2018 05.
Article in English | MEDLINE | ID: mdl-29428510

ABSTRACT

Spiders of the infraorder Mygalomorphae are fast becoming model organisms for the study of biogeography and speciation. However, these spiders can be difficult to study in the absence of fundamental life history information. In particular, their cryptic nature hinders comprehensive sampling, and linking males with conspecific females can be challenging. Recently discovered differences in burrow entrance architecture and male morphology indicated that these challenges may have impeded our understanding of the trapdoor spider genus Euoplos in Australia's eastern mesic zone. We investigated the evolutionary significance of these discoveries using a multi-locus phylogenetic approach. Our results revealed the existence of a second, previously undocumented, lineage of Euoplos in the eastern mesic zone. This new lineage occurs in sympatry with a lineage previously known from the region, and the two are consistently divergent in their burrow entrance architecture and male morphology, revealing the suitability of these characters for use in phylogenetic studies. Divergent burrow entrance architecture and observed differences in microhabitat preferences are suggested to facilitate sympatry and syntopy between the lineages. Finally, by investigating male morphology and plotting it onto the phylogeny, we revealed that the majority of Euoplos species remain undescribed, and that males of an unnamed species from the newly discovered lineage had historically been linked, erroneously, to a described species from the opposite lineage. This paper clarifies the evolutionary relationships underlying life history diversity in the Euoplos of eastern Australia, and provides a foundation for urgently needed taxonomic revision of this genus.


Subject(s)
Phylogeny , Spiders/anatomy & histology , Spiders/classification , Animals , Australia , Biological Evolution , Electron Transport Complex IV/genetics , Female , Male , Sequence Analysis, DNA , Spiders/genetics , Sympatry
5.
Mol Phylogenet Evol ; 109: 302-320, 2017 04.
Article in English | MEDLINE | ID: mdl-28126515

ABSTRACT

The formation and spread of the Australian arid zone during the Neogene was a profoundly transformative event in the biogeographic history of Australia, resulting in extinction or range contraction in lineages adapted to mesic habitats, as well as diversification and range expansion in arid-adapted taxa (most of which evolved from mesic ancestors). However, the geographic origins of the arid zone biota are still relatively poorly understood, especially among highly diverse invertebrate lineages, many of which are themselves poorly documented at the species level. Spiny trapdoor spiders (Idiopidae: Arbanitinae) are one such lineage, having mesic 'on-the-continent' Gondwanan origins, while also having experienced major arid zone radiations in select clades. In this study, we present new orthologous nuclear markers for the phylogenetic inference of mygalomorph spiders, and use them to infer the phylogeny of Australasian Idiopidae with a 12-gene parallel tagged amplicon next-generation sequencing approach. We use these data to test the mode and timing of diversification of arid-adapted idiopid lineages across mainland Australia, and employ a continent-wide sampling of the fauna's phylogenetic and geographic diversity to facilitate ancestral area inference. We further explore the evolution of phenotypic and behavioural characters associated with both arid and mesic environments, and test an 'out of south-western Australia' hypothesis for the origin of arid zone clades. Three lineages of Idiopidae are shown to have diversified in the arid zone during the Miocene, one (genus Euoplos) exclusively in Western Australia. Arid zone Blakistonia likely had their origins in South Australia, whereas in the most widespread genus Aganippe, a more complex scenario is evident, with likely range expansion from southern Western Australia to southern South Australia, from where the bulk of the arid zone fauna then originated. In Aganippe, remarkable adaptations to phragmotic burrow-plugging in transitional arid zone taxa have evolved twice independently in Western Australia, while in Misgolas and Cataxia, burrow door-building behaviours have likely been independently lost at least three times in the eastern Australian mesic zone. We also show that the presence of idiopids in New Zealand (Cantuaria) is likely to be the result of recent dispersal from Australia, rather than ancient continental vicariance. By providing the first comprehensive, continental synopsis of arid zone biogeography in an Australian arachnid lineage, we show that the diversification of arbanitine Idiopidae was intimately associated with climate shifts during the Neogene, resulting in multiple Mio-Pliocene radiations.


Subject(s)
Biological Evolution , Climate Change , Spiders/genetics , Animals , Australia , Ecosystem , Genetic Speciation , New Zealand , Phylogeny , South Australia , Spiders/classification , Western Australia
6.
Ecol Evol ; 13(1): e9706, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36636427

ABSTRACT

Understanding the drivers of morphological convergence requires investigation into its relationship with behavior and niche space, and such investigations in turn provide insights into evolutionary dynamics, functional morphology, and life history. Mygalomorph spiders (trapdoor spiders and their kin) have long been associated with high levels of morphological homoplasy, and many convergent features can be intuitively associated with different behavioral niches. Using genus-level phylogenies based on recent genomic studies and a newly assembled matrix of discrete behavioral and somatic morphological characters, we reconstruct the evolution of burrowing behavior in the Mygalomorphae, compare the influence of behavior and evolutionary history on somatic morphology, and test hypotheses of correlated evolution between specific morphological features and behavior. Our results reveal the simplicity of the mygalomorph adaptive landscape, with opportunistic, web-building taxa at one end, and burrowing/nesting taxa with structurally modified burrow entrances (e.g., a trapdoor) at the other. Shifts in behavioral niche, in both directions, are common across the evolutionary history of the Mygalomorphae, and several major clades include taxa inhabiting both behavioral extremes. Somatic morphology is heavily influenced by behavior, with taxa inhabiting the same behavioral niche often more similar morphologically than more closely related but behaviorally divergent taxa, and we were able to identify a suite of 11 somatic features that show significant correlation with particular behaviors. We discuss these findings in light of the function of particular morphological features, niche dynamics within the Mygalomorphae, and constraints on the mygalomorph adaptive landscape relative to other spiders.

7.
Insects ; 14(5)2023 May 10.
Article in English | MEDLINE | ID: mdl-37233077

ABSTRACT

Previously described from only fragments of exoskeleton and juvenile specimens, the cave spider genus Troglodiplura (Araneae: Anamidae), endemic to the Nullarbor Plain, is the only troglomorphic member of the infraorder Mygalomorphae recorded from Australia. We investigated the distribution of Troglodiplura in South Australia, collecting and observing the first (intact) mature specimens, widening the number of caves it has been recorded in, and documenting threats to conservation. Phylogenetic analyses support the placement of Troglodiplura as an independent lineage within the subfamily Anaminae (the 'Troglodiplura group') and provide unequivocal evidence that populations from apparently isolated cave systems are conspecifics of T. beirutpakbarai Harvey & Rix, 2020, with extremely low or negligible inter-population mitochondrial divergences. This is intriguing evidence for recent or contemporary subterranean dispersal of these large, troglomorphic spiders. Observations of adults and juvenile spiders taken in the natural cave environment, and supported by observations in captivity, revealed the use of crevices within caves as shelters, but no evidence of silk use for burrow construction, contrasting with the typical burrowing behaviours seen in other Anamidae. We identify a range of threats posed to the species and to the fragile cave ecosystem, and provide recommendations for further research to better define the distribution of vulnerable taxa within caves and identify actions needed to protect them.

8.
Mol Phylogenet Evol ; 62(1): 375-96, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22040763

ABSTRACT

The rainforests, wet sclerophyll forests and temperate heathlands of the Australian mesic zone are home to a diverse and highly endemic biota, including numerous old endemic lineages restricted to refugial, mesic biomes. A growing number of phylogeographic studies have attempted to explain the origins and diversification of the Australian mesic zone biota, in order to test and better understand the mode and tempo of historical speciation within Australia. Assassin spiders (family Archaeidae) are a lineage of iconic araneomorph spiders, characterised by their antiquity, remarkable morphology and relictual biogeography on the southern continents. The Australian assassin spider fauna is characterised by a high diversity of allopatric species, many of which are restricted to individual mountains or montane systems, and all of which are closely tied to mesic and/or refugial habitats in the east and extreme south-west of mainland Australia. We tested the phylogeny and vicariant biogeography of the Australian Archaeidae (genus Austrarchaea Forster & Platnick), using a multi-locus molecular approach. Fragments from six mitochondrial genes (COI, COII, tRNA-K, tRNA-D, ATP8, ATP6) and one nuclear protein-coding gene (Histone H3) were used to infer phylogenetic relationships and to explore the phylogeographic origins of the diverse Australian fauna. Bayesian analyses of the complete molecular dataset, along with differentially-partitioned Bayesian and parsimony analyses of a smaller concatenated dataset, revealed the presence of three major Australian lineages, each with non-overlapping distributions in north-eastern Queensland, mid-eastern Australia and southern Australia, respectively. Divergence date estimation using mitochondrial data and a rate-calibrated relaxed molecular clock revealed that major lineages diverged in the early Tertiary period, prior to the final rifting of Australia from East Antarctica. Subsequent speciation occurred during the Miocene (23-5.3 million years ago), with tropical and subtropical taxa diverging in the early-mid Miocene, prior to southern and temperate taxa in the mid-late Miocene. Area cladograms reconciled with Bayesian chronograms for all known Archaeidae in southern and south-eastern Australia revealed seven potentially vicariant biogeographic barriers in eastern Queensland, New South Wales and southern Australia, each proposed and discussed in relation to other mesic zone taxa. Five of these barriers were inferred as being of early Miocene age, and implicated in the initial vicariant separation of endemic regional clades. Phylogeographic results for Australian Archaeidae are congruent with a model of sequential allopatric speciation in Tertiary refugia, as driven by the contraction and fragmentation of Australia's mesic biomes during the Miocene. Assassin spiders clearly offer great potential for further testing historical biogeographic processes in temperate and eastern Australia, and are a useful group for better understanding the biology and biogeography of the Australian mesic zone.


Subject(s)
Genetic Speciation , Phylogeny , Spiders/genetics , Animals , Arthropod Proteins/genetics , Australia , Base Sequence , Bayes Theorem , Climate , Electron Transport Complex IV/genetics , Female , Male , Markov Chains , Mitochondrial Proton-Translocating ATPases/genetics , Molecular Sequence Annotation , Monte Carlo Method , Multilocus Sequence Typing , Phylogeography , RNA, Transfer/genetics , Sequence Alignment , Spiders/anatomy & histology , Spiders/classification
9.
Zootaxa ; 4861(1): zootaxa.4861.1.5, 2020 Oct 15.
Article in English | MEDLINE | ID: mdl-33055870

ABSTRACT

The D'Aguilar Range of subtropical south-eastern Queensland (Australia), harbours an upland rainforest biota characterised by high levels of endemic diversity. Following recent phylogenetic and biogeographic research into the open-holed trapdoor spiders of the genus Namea Raven, 1984 (family Anamidae), remarkable levels of sympatry for a single genus of mygalomorph spiders were recorded from the D'Aguilar Range. It is now known that eight different species in the genus can be found in the D'Aguilar uplands, with five apparently endemic to rainforest habitats. In this paper we present a phylogenetic and taxonomic synopsis of the remarkable anamid fauna of the D'Aguilar Range: a key to the eight species is provided, and four new species of Namea are described (N. gloriosa sp. nov., N. gowardae sp. nov., N. nebo sp. nov. and N. nigritarsus sp. nov.). In shining a spotlight on the mygalomorph spiders of this region, we highlight the D'Aguilar Range as a hotspot of subtropical rainforest diversity, and an area of considerable conservation value.


Subject(s)
Rainforest , Spiders , Animals , Australia , Phylogeny
10.
Zootaxa ; 4674(3): zootaxa.4674.3.3, 2019 Sep 25.
Article in English | MEDLINE | ID: mdl-31716002

ABSTRACT

The open-holed trapdoor spiders of the genus Teyl Main, 1975 from the Pilbara bioregion of Western Australia are investigated. A single endemic species from the southern Pilbara, T. heuretes sp. nov., is newly described, representing the northern-most occurrence of the genus in Australia. Legacy molecular data for Australian Nemesiidae, along with newly generated sequences for all described species of Teyl known from Western Australia, are analysed using Maximum Likelihood methods, providing molecular data for T. heuretes and an expanded phylogenetic assessment of the genus.


Subject(s)
Spiders , Animals , Australia , Phylogeny , Western Australia
11.
Zootaxa ; 4518(1): 1-76, 2018 Nov 12.
Article in English | MEDLINE | ID: mdl-30486184

ABSTRACT

A combined molecular and morphological approach was used to revise the Australian spiny trapdoor spiders of the genus Blakistonia Hogg. Where possible, our molecular approach used sequence data from the COI barcoding gene, which were analysed using Bayesian, RAxML and neighbour-joining approaches. These molecular data were combined with morphology to describe and diagnose the genus, to redescribe the type (and only previously valid) species, B. aurea Hogg, 1902, and to diagnose, describe and map 19 new species: B. bassi sp. n., B. bella sp. n., B. birksi sp. n., B. carnarvon sp. n., B. emmottiorum sp. n., B. gemmelli sp. n., B. hortoni sp. n., B. mainae sp. n., B. maryae sp. n., B. newtoni sp. n., B. nullarborensis sp. n., B. olea sp. n., B. parva sp. n., B. pidax sp. n., B. plata sp. n., B. raveni sp. n., B. tariae sp. n., B. tunstilli sp. n., and B. wingellina sp. n. The genus Blakistonia is found to be distributed throughout the Australian arid and semi-arid zones, from the Wheatbelt region of Western Australia to central Queensland and western Victoria.


Subject(s)
Bayes Theorem , Spiders , Animals , Queensland , Victoria , Western Australia
12.
Zookeys ; (756): 1-121, 2018.
Article in English | MEDLINE | ID: mdl-29773959

ABSTRACT

The aganippine shield-backed trapdoor spiders of the monophyletic nigrum-group of Idiosoma Ausserer s. l. are revised, and 15 new species are described from Western Australia and the Eyre Peninsula of South Australia: I. arenaceum Rix & Harvey, sp. n., I. corrugatum Rix & Harvey, sp. n., I. clypeatum Rix & Harvey, sp. n., I. dandaragan Rix & Harvey, sp. n., I. formosum Rix & Harvey, sp. n., I. gardneri Rix & Harvey, sp. n., I. gutharuka Rix & Harvey, sp. n., I. incomptum Rix & Harvey, sp. n., I. intermedium Rix & Harvey, sp. n., I. jarrah Rix & Harvey, sp. n., I. kopejtkaorum Rix & Harvey, sp. n., I. kwongan Rix & Harvey, sp. n., I. mcclementsorum Rix & Harvey, sp. n., I. mcnamarai Rix & Harvey, sp. n., and I. schoknechtorum Rix & Harvey, sp. n. Two previously described species from south-western Western Australia, I. nigrum Main, 1952 and I. sigillatum (O. P.-Cambridge, 1870), are re-illustrated and re-diagnosed, and complementary molecular data for 14 species and seven genes are analysed with Bayesian methods. Members of the nigrum-group are of long-standing conservation significance, and I. nigrum is the only spider in Australia to be afforded threatened species status under both State and Commonwealth legislation. Two other species, I. formosum Rix & Harvey, sp. n. and I. kopejtkaorum Rix & Harvey, sp. n., are also formally listed as Endangered under Western Australian State legislation. Here we significantly relimit I. nigrum to include only those populations from the central and central-western Wheatbelt bioregion, and further document the known diversity and conservation status of all known species.

13.
PLoS One ; 12(8): e0180139, 2017.
Article in English | MEDLINE | ID: mdl-28767648

ABSTRACT

The Migidae are a family of austral trapdoor spiders known to show a highly restricted and disjunct distribution pattern. Here, we aim to investigate the phylogeny and historical biogeography of the group, which was previously thought to be vicariant in origin, and examine the biogeographic origins of the genus Moggridgea using a dated multi-gene phylogeny. Moggridgea specimens were sampled from southern Australia and Africa, and Bertmainus was sampled from Western Australia. Sanger sequencing methods were used to generate a robust six marker molecular dataset consisting of the nuclear genes 18S rRNA, 28S rRNA, ITS rRNA, XPNPEP3 and H3 and the mitochondrial gene COI. Bayesian and Maximum Likelihood methods were used to analyse the dataset, and the key dispersal nodes were dated using BEAST. Based on our data, we demonstrate that Moggridgea rainbowi from Kangaroo Island, Australia is a valid member of the otherwise African genus Moggridgea. Molecular clock dating analyses show that the inter-specific divergence of M. rainbowi from African congeners is between 2.27-16.02 million years ago (Mya). This divergence date significantly post-dates the separation of Africa from Gondwana (95 Mya) and therefore does not support a vicariant origin for Australian Moggridgea. It also pre-dates human colonisation of Kangaroo Island, a result which is further supported by the intra-specific divergence date of 1.10-6.39 Mya between separate populations on Kangaroo Island. These analyses provide strong support for the hypothesis that Moggridgea colonised Australia via long-distance trans-Indian Ocean dispersal, representing the first such documented case in a mygalomorph spider.


Subject(s)
Animal Distribution , Genetic Speciation , Phylogeny , Spiders/classification , Africa , Aminopeptidases/genetics , Animals , Australia , Bayes Theorem , Cytochromes b/genetics , DNA/chemistry , DNA/genetics , DNA, Mitochondrial/chemistry , DNA, Mitochondrial/genetics , Histones/genetics , Indian Ocean , Phylogeography , RNA, Ribosomal, 18S/genetics , RNA, Ribosomal, 28S/genetics , Sequence Analysis, DNA , Spiders/genetics
14.
Biol Rev Camb Philos Soc ; 90(3): 762-93, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25125282

ABSTRACT

The south-western land division of Western Australia (SWWA), bordering the temperate Southern and Indian Oceans, is the only global biodiversity hotspot recognised in Australia. Renowned for its extraordinary diversity of endemic plants, and for some of the largest and most botanically significant temperate heathlands and woodlands on Earth, SWWA has long fascinated biogeographers. Its flat, highly weathered topography and the apparent absence of major geographic factors usually implicated in biotic diversification have challenged attempts to explain patterns of biogeography and mechanisms of speciation in the region. Botanical studies have always been central to understanding the biodiversity values of SWWA, although surprisingly few quantitative botanical analyses have allowed for an understanding of historical biogeographic processes in both space and time. Faunistic studies, by contrast, have played little or no role in defining hotspot concepts, despite several decades of accumulating quantitative research on the phylogeny and phylogeography of multiple lineages. In this review we critically analyse datasets with explicit supporting phylogenetic data and estimates of the time since divergence for all available elements of the terrestrial fauna, and compare these datasets to those available for plants. In situ speciation has played more of a role in shaping the south-western Australian fauna than has long been supposed, and has occurred in numerous endemic lineages of freshwater fish, frogs, reptiles, snails and less-vagile arthropods. By contrast, relatively low levels of endemism are found in birds, mammals and highly dispersive insects, and in situ speciation has played a negligible role in generating local endemism in birds and mammals. Quantitative studies provide evidence for at least four mechanisms driving patterns of endemism in south-western Australian animals, including: (i) relictualism of ancient Gondwanan or Pangaean taxa in the High Rainfall Province; (ii) vicariant isolation of lineages west of the Nullarbor divide; (iii) in situ speciation; and (iv) recent population subdivision. From dated quantitative studies we derive four testable models of historical biogeography for animal taxa in SWWA, each explicit in providing a spatial, temporal and topological perspective on patterns of speciation or divergence. For each model we also propose candidate lineages that may be worthy of further study, given what we know of their taxonomy, distributions or relationships. These models formalise four of the strongest patterns seen in many animal taxa from SWWA, although other models are clearly required to explain particular, idiosyncratic patterns. Generating numerous new datasets for suites of co-occurring lineages in SWWA will help refine our understanding of the historical biogeography of the region, highlight gaps in our knowledge, and allow us to derive general postulates from quantitative (rather than qualitative) results. For animals, this process has now begun in earnest, as has the process of taxonomically documenting many of the more diverse invertebrate lineages. The latter remains central to any attempt to appreciate holistically biogeographic patterns and processes in SWWA, and molecular phylogenetic studies should - where possible - also lead to tangible taxonomic outcomes.


Subject(s)
Biodiversity , Animals , Australia , Genetic Speciation , Phylogeny , Phylogeography
15.
Zookeys ; (218): 1-50, 2012.
Article in English | MEDLINE | ID: mdl-22977344

ABSTRACT

The assassin spiders of the family Archaeidae from tropical north-eastern Queensland are revised, with eight new species described from rainforest habitats of the Wet Tropics bioregion and Mackay-Whitsundays Hinterland: Austrarchaea griswoldisp. n., Austrarchaea hoskinisp. n., Austrarchaea karenaesp. n., Austrarchaea tealeisp. n., Austrarchaea thompsonisp. n., Austrarchaea wallaceisp. n., Austrarchaea westisp. n. and Austrarchaea woodaesp. n. Specimens of the only previously described species, Austrarchaea daviesae Forster & Platnick, 1984, are redescribed from the southern Atherton Tableland. The rainforests of tropical eastern Queensland are found to be a potential hotspot of archaeid diversity and endemism, with the region likely to be home to numerous additional short-range endemic taxa. A key to species complements the taxonomy, with maps, natural history information and conservation assessments provided for all species.

16.
Zookeys ; (191): 1-62, 2012.
Article in English | MEDLINE | ID: mdl-22639534

ABSTRACT

The Assassin Spiders of the family Archaeidae from southern Australia are revised, with a new genus (Zephyrarchaeagen. n.) and nine new species described from temperate, mesic habitats in southern Victoria, South Australia and south-western Western Australia: Zephyrarchaea austinisp. n., Zephyrarchaea barrettaesp. n., Zephyrarchaea grayisp. n., Zephyrarchaea janineaesp. n., Zephyrarchaea maraesp. n., Zephyrarchaea markisp. n., Zephyrarchaea melindaesp. n., Zephyrarchaea porchisp. n. and Zephyrarchaea vichickmanisp. n. Specimens of the type species, Zephyrarchaea mainae (Platnick, 1991), comb. n., are redescribed from the Albany region of Western Australia, along with the holotype female of Zephyrarchaea robinsi (Harvey, 2002) comb. n. from the Stirling Range National Park. The previously described species Archaea hickmani Butler, 1929 from Victoria is here recognised as a nomen dubium. A key to species and multi-locus molecular phylogeny complement the species-level taxonomy, with maps, habitat photos, natural history information and conservation assessments provided for all species.

17.
Zookeys ; (123): 1-100, 2011.
Article in English | MEDLINE | ID: mdl-21998529

ABSTRACT

The Assassin Spiders of the family Archaeidae are an ancient and iconic lineage of basal araneomorph spiders, characterised by a specialised araneophagic ecology and unique, 'pelican-like' cephalic morphology. Found throughout the rainforests, wet sclerophyll forests and mesic heathlands of south-western, south-eastern and north-eastern Australia, the genus Austrarchaea Forster & Platnick, 1984 includes a diverse assemblage of relictual, largely short-range endemic species. With recent dedicated field surveys and significant advances in our understanding of archaeid biology and ecology, numerous new species of assassin spiders have been discovered in the montane sub-tropical and warm-temperate closed forests of mid-eastern Australia, including several rare or enigmatic taxa and species of conservation concern. This fauna is revised and 17 new species are described from south-eastern Queensland and eastern New South Wales: Austrarchaea alanisp. n., Austrarchaea aleenaesp. n., Austrarchaea binfordaesp. n., Austrarchaea christopherisp. n., Austrarchaea clyneaesp. n., Austrarchaea cunninghamisp. n., Austrarchaea dianneaesp. n., Austrarchaea harmsisp. n., Austrarchaea helenaesp. n., Austrarchaea judyaesp. n., Austrarchaea mascordisp. n., Austrarchaea mcguiganaesp. n., Austrarchaea milledgeisp. n., Austrarchaea monteithisp. n., Austrarchaea platnickorumsp. n., Austrarchaea ravenisp. n. and Austrarchaea smithaesp. n. Adult specimens of the type species, Austrarchaea nodosa (Forster, 1956) are redescribed from the Lamington Plateau, south-eastern Queensland, and distinguished from the sympatric species Austrarchaea dianneaesp. n. A key to species and a molecular phylogenetic analysis of COI and COII mtDNA sequences complement the species-level taxonomy, with maps, habitat photos, natural history information and conservation assessments provided for all species.

18.
Mol Phylogenet Evol ; 46(3): 1031-48, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18162409

ABSTRACT

The spider family Micropholcommatidae is an enigmatic taxon of uncertain limits and uncertain affinities. Various phylogenetic hypotheses have been proposed for the family, but these hypotheses have never been tested with a robust phylogenetic analysis. The existence of similar Australasian and New World taxa, the possibility of morphological convergence associated with extreme 'smallness', and the apparent paucity of synapomorphic morphological characters, have all clouded generic relationships in this group. We used fragments from two nuclear ribosomal RNA genes (18S and 28S) to test the monophyly and phylogenetic position of the Micropholcommatidae. The analyses incorporated 50 ingroup spider species, including 23 micropholcommatid species and representatives from 14 other spider families. Ribosomal RNA secondary structures were inferred for the V3-V5 region of the 18S rRNA gene, and Domain II of the 28S rRNA gene of Hickmania troglodytes [Higgins, E.T., Petterd, W.F., 1883. Description of a new cave-inhabiting spider, together with notes on mammalian remains from a recently discovered cave in the Chudleigh district. Pap. Proc. R. Soc. Tasman. 1882, 191-192]. These secondary structures were used to guide multiple sequence alignments, and determine the position and nature of indels in different taxa. Secondary structure information was also incorporated into a structurally partitioned rRNA analysis in MrBayes Version 3.1.2, using a doublet model of nucleotide substitution. This structurally partitioned rRNA analysis provided a less resolved but more conservative and informative estimate of phylogeny than an otherwise identical, unpartitioned rDNA analysis. With the exception of the Chilean species Teutoniella cekalovici [Platnick, N.I., Forster, R.R., 1986. On Teutoniella, an American genus of the spider family Micropholcommatidae (Araneae, Palpimanoidea). Am. Mus. Novit. 2854, 1-9], the family Micropholcommatidae was found to be monophyletic with three monophyletic sub-lineages-congruent with the Micropholcommatinae, Textricellinae, and a group of 'taphiassine' species. Teutoniella cekalovici never grouped with the other micropholcommatid taxa, and could not be assigned to any family group with confidence.


Subject(s)
Phylogeny , RNA, Ribosomal, 18S/genetics , RNA, Ribosomal, 28S/genetics , Spiders/genetics , Animals , Base Sequence , Bayes Theorem , Cell Nucleus/genetics , Molecular Sequence Data , Nucleic Acid Conformation , RNA, Ribosomal, 18S/chemistry , RNA, Ribosomal, 28S/chemistry , Sequence Analysis, DNA , Spiders/classification
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