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1.

Developmental dynamics of two bipotent thymic epithelial progenitor types.

Nusser, Anja; Swann, Jeremy B; Krauth, Brigitte; Diekhoff, Dagmar; Calderon, Lesly; Happe, Christiane; Grün, Dominic; Boehm, Thomas.

Nature ; 606(7912): 165-171, 2022 06.

Article in English | MEDLINE | ID: mdl-35614226

2.

Author Correction: Elephant shark genome provides unique insights into gnathostome evolution.

Venkatesh, Byrappa; Lee, Alison P; Ravi, Vydianathan; Maurya, Ashish K; Lian, Michelle M; Swann, Jeremy B; Ohta, Yuko; Flajnik, Martin F; Sutoh, Yoichi; Kasahara, Masanori; Hoon, Shawn; Gangu, Vamshidhar; Roy, Scott W; Irimia, Manuel; Korzh, Vladimir; Kondrychyn, Igor; Lim, Zhi Wei; Tay, Boon-Hui; Tohari, Sumanty; Kong, Kiat Whye; Ho, Shufen; Lorente-Galdos, Belen; Quilez, Javier; Marques-Bonet, Tomas; Raney, Brian J; Ingham, Philip W; Tay, Alice; Hillier, LaDeana W; Minx, Patrick; Boehm, Thomas; Wilson, Richard K; Brenner, Sydney; Warren, Wesley C.

Nature ; 588(7837): E15, 2020 Dec.

Article in English | MEDLINE | ID: mdl-33214712

3.

Publisher Correction: Developmental dynamics of two bipotent thymic epithelial progenitor types.

Nusser, Anja; Swann, Jeremy B; Krauth, Brigitte; Diekhoff, Dagmar; Calderon, Lesly; Happe, Christiane; Grün, Dominic; Boehm, Thomas.

Nature ; 626(8000): E17, 2024 Feb.

Article in English | MEDLINE | ID: mdl-38302744

4.

Lymphocyte pathway analysis using naturally lymphocyte-deficient fish.

Zhang, Gaoqun; Swann, Jeremy B; Felder, Marius; O'Meara, Connor; Boehm, Thomas.

Eur J Immunol ; 53(12): e2350577, 2023 12.

Article in English | MEDLINE | ID: mdl-37593947

5.

Foxn1 is not essential for T-cell development in teleosts.

Schorpp, Michael; Swann, Jeremy B; Hess, Isabell; Ho, Hsuan-Ching; Pietsch, Theodore W; Boehm, Thomas.

Eur J Immunol ; 53(12): e2350725, 2023 12.

Article in English | MEDLINE | ID: mdl-37724048

6.

A survey of the adaptive immune genes of the polka-dot batfish Ogcocephalus cubifrons.

Swann, Jeremy B; Grammer, Christiane; Schorpp, Michael; Boehm, Thomas.

BMC Immunol ; 24(1): 20, 2023 07 21.

Article in English | MEDLINE | ID: mdl-37480016

7.

High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing.

Sanderson, Nicholas D; Swann, Jeremy; Barker, Leanne; Kavanagh, James; Hoosdally, Sarah; Crook, Derrick; Street, Teresa L; Eyre, David W.

Genome Res ; 30(9): 1354-1363, 2020 09.

Article in English | MEDLINE | ID: mdl-32873606

8.

ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads.

Hunt, Martin; Swann, Jeremy; Constantinides, Bede; Fowler, Philip W; Iqbal, Zamin.

Bioinformatics ; 38(12): 3291-3293, 2022 06 13.

Article in English | MEDLINE | ID: mdl-35551365

9.

Proximal Lck Promoter-Driven Cre Function Is Limited in Neonatal and Ineffective in Adult Î³Î´ T Cell Development.

Fiala, Gina J; Schaffer, Anna-Maria; Merches, Katja; Morath, Anna; Swann, Jeremy; Herr, Laurenz A; Hils, Miriam; Esser, Charlotte; Minguet, Susana; Schamel, Wolfgang W A.

J Immunol ; 203(2): 569-579, 2019 07 15.

Article in English | MEDLINE | ID: mdl-31167772

10.

Reconciling the Potentially Irreconcilable? Genotypic and Phenotypic Amoxicillin-Clavulanate Resistance in Escherichia coli.

Davies, Timothy J; Stoesser, Nicole; Sheppard, Anna E; Abuoun, Manal; Fowler, Philip; Swann, Jeremy; Quan, T Phuong; Griffiths, David; Vaughan, Alison; Morgan, Marcus; Phan, Hang T T; Jeffery, Katie J; Andersson, Monique; Ellington, Matt J; Ekelund, Oskar; Woodford, Neil; Mathers, Amy J; Bonomo, Robert A; Crook, Derrick W; Peto, Tim E A; Anjum, Muna F; Walker, A Sarah.

Antimicrob Agents Chemother ; 64(6)2020 05 21.

Article in English | MEDLINE | ID: mdl-32205351

11.

Elephant shark genome provides unique insights into gnathostome evolution.

Venkatesh, Byrappa; Lee, Alison P; Ravi, Vydianathan; Maurya, Ashish K; Lian, Michelle M; Swann, Jeremy B; Ohta, Yuko; Flajnik, Martin F; Sutoh, Yoichi; Kasahara, Masanori; Hoon, Shawn; Gangu, Vamshidhar; Roy, Scott W; Irimia, Manuel; Korzh, Vladimir; Kondrychyn, Igor; Lim, Zhi Wei; Tay, Boon-Hui; Tohari, Sumanty; Kong, Kiat Whye; Ho, Shufen; Lorente-Galdos, Belen; Quilez, Javier; Marques-Bonet, Tomas; Raney, Brian J; Ingham, Philip W; Tay, Alice; Hillier, LaDeana W; Minx, Patrick; Boehm, Thomas; Wilson, Richard K; Brenner, Sydney; Warren, Wesley C.

Nature ; 505(7482): 174-9, 2014 Jan 09.

Article in English | MEDLINE | ID: mdl-24402279

12.

Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices.

Sanderson, Nicholas D; Street, Teresa L; Foster, Dona; Swann, Jeremy; Atkins, Bridget L; Brent, Andrew J; McNally, Martin A; Oakley, Sarah; Taylor, Adrian; Peto, Tim E A; Crook, Derrick W; Eyre, David W.

BMC Genomics ; 19(1): 714, 2018 Sep 27.

Article in English | MEDLINE | ID: mdl-30261842

13.

Autoimmunity associated with chemically induced thymic dysplasia.

Nagakubo, Daisuke; Swann, Jeremy B; Birmelin, Stefanie; Boehm, Thomas.

Int Immunol ; 29(8): 385-390, 2017 08 01.

Article in English | MEDLINE | ID: mdl-28992076

14.

Everything in its place.

Swann, Jeremy B; Boehm, Thomas.

Immunity ; 31(6): 856-8, 2009 Dec 18.

Article in English | MEDLINE | ID: mdl-20064445

15.

Quantitative fat and R2* mapping in vivo to measure lipid-rich necrotic core and intraplaque hemorrhage in carotid atherosclerosis.

Koppal, Sandeep; Warntjes, Marcel; Swann, Jeremy; Dyverfeldt, Petter; Kihlberg, Johan; Moreno, Rodrigo; Magee, Derek; Roberts, Nicholas; Zachrisson, Helene; Forssell, Claes; Länne, Toste; Treanor, Darren; de Muinck, Ebo D.

Magn Reson Med ; 78(1): 285-296, 2017 07.

Article in English | MEDLINE | ID: mdl-27510300

16.

Evolution of lymphoid tissues.

Boehm, Thomas; Hess, Isabell; Swann, Jeremy B.

Trends Immunol ; 33(6): 315-21, 2012 Jun.

Article in English | MEDLINE | ID: mdl-22483556

17.

Venkatesh et al. reply.

Venkatesh, Byrappa; Lee, Alison P; Swann, Jeremy B; Ohta, Yuko; Flajnik, Martin F; Kasahara, Masanori; Boehm, Thomas; Warren, Wesley C.

Nature ; 511(7508): E9-10, 2014 Jul 10.

Article in English | MEDLINE | ID: mdl-25008535

18.

Adaptive immunity maintains occult cancer in an equilibrium state.

Koebel, Catherine M; Vermi, William; Swann, Jeremy B; Zerafa, Nadeen; Rodig, Scott J; Old, Lloyd J; Smyth, Mark J; Schreiber, Robert D.

Nature ; 450(7171): 903-7, 2007 Dec 06.

Article in English | MEDLINE | ID: mdl-18026089

19.

Thymopoiesis in mice depends on a Foxn1-positive thymic epithelial cell lineage.

Corbeaux, Tatiana; Hess, Isabell; Swann, Jeremy B; Kanzler, Benoît; Haas-Assenbaum, Annette; Boehm, Thomas.

Proc Natl Acad Sci U S A ; 107(38): 16613-8, 2010 Sep 21.

Article in English | MEDLINE | ID: mdl-20823228

20.

Penicillin Binding Protein Substitutions Cooccur with Fluoroquinolone Resistance in Epidemic Lineages of Multidrug-Resistant Clostridioides difficile.

Dingle, Kate E; Freeman, Jane; Didelot, Xavier; Quan, T Phuong; Eyre, David W; Swann, Jeremy; Spittal, William D; Clark, Emma V; Jolley, Keith A; Walker, A Sarah; Wilcox, Mark H; Crook, Derrick W.

mBio ; 14(2): e0024323, 2023 04 25.

Article in English | MEDLINE | ID: mdl-37017518

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