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1.
Proc Biol Sci ; 279(1734): 1731-9, 2012 May 07.
Article in English | MEDLINE | ID: mdl-22130605

ABSTRACT

Combining biogeographic, ecological, morphological, molecular and chemical data, we document departure from strict specialization in the fig-pollinating wasp mutualism. We show that the pollinating wasps Elisabethiella stuckenbergi and Elisabethiella socotrensis form a species complex of five lineages in East and Southern Africa. Up to two morphologically distinct lineages were found to co-occur locally in the southern African region. Wasps belonging to a single lineage were frequently the main regional pollinators of several Ficus species. In South Africa, two sister lineages, E. stuckenbergi and E. socotrensis, pollinate Ficus natalensis but only E. stuckenbergi also regularly pollinates Ficus burkei. The two wasp species co-occur in individual trees of F. natalensis throughout KwaZulu-Natal. Floral volatile blends emitted by F. natalensis in KwaZulu-Natal were similar to those emitted by F. burkei and different from those produced by other African Ficus species. The fig odour similarity suggests evolutionary convergence to attract particular wasp species. The observed pattern may result from selection for pollinator sharing among Ficus species. Such a process, with one wasp species regionally pollinating several hosts, but several wasp species pollinating a given Ficus species across its geographical range could play an important role in the evolutionary dynamics of the Ficus-pollinating wasp association.


Subject(s)
Ficus/physiology , Pollination , Symbiosis , Wasps/physiology , Animals , Biological Evolution , Phylogeny , South Africa , Species Specificity , Volatilization
2.
J Clin Endocrinol Metab ; 84(3): 1056-60, 1999 Mar.
Article in English | MEDLINE | ID: mdl-10084595

ABSTRACT

Premature ovarian failure (POF) has an autoimmune pathogenesis in a significant proportion of cases. Autoantibodies to the steroid cell enzyme, 3beta-hydroxysteroid dehydrogenase (3betaHSD) are present in one fifth of patients and may identify an autoimmune subgroup. As autoimmune diseases are associated with alleles of the human leukocyte antigen (HLA) genes, we examined the distribution of HLA-DRB1 and -DQB1 genotypes in 118 women with POF, of whom 21% had 3betaHSD autoantibodies, and 134 racially matched control subjects. Two HLA-DQB1 alleles, 0301 and 0603, were associated with 3betaHSD autoantibody positivity (P = 0.04 and P = 0.006, respectively). As the DQB1*0301 and -0603 genes share an identical codon at position 57 (aspartate, Asp), we analyzed the frequency of DQbeta-Asp57 encoding DQB1 genes in our series. Eighteen of 21 POF patients with 3betaHSD autoantibodies had DQbeta-Asp57-encoding genotypes (haplotype frequency, 27 of 42; 64%) compared with 92 of 134 control subjects (haplotype frequency, 109 of 268; 41%; P = 0.004), and 9 of 21 (43%) cases were homozygous for codon 57 genotypes compared with 17 of 134 (13%) control subjects (P = 0.0006). These probability values were not significant after correction for multiple testing, and these trends will therefore require confirmation in larger cohorts. HLA class II molecules present antigenic peptides to CD4+ T lymphocytes. DQbeta57 occupies a key site at the boundary of the peptide binding groove, with a major impact on peptide binding. Our preliminary demonstration of an association between POF, 3betaHSD autoimmunity, and a distinctive HLA-DQ molecule supports the hypothesis that autoantibodies to this steroid cell enzyme may be markers of autoimmune ovarian failure and suggests that presentation of autoantigenic or external peptides to T lymphocytes by HLA-DQ molecules with Asp57-beta-chains is important in the pathogenesis of this disease.


Subject(s)
3-Hydroxysteroid Dehydrogenases/immunology , Aspartic Acid/genetics , Autoimmunity/genetics , HLA-DQ Antigens/genetics , Primary Ovarian Insufficiency/genetics , Primary Ovarian Insufficiency/immunology , Amino Acid Sequence/genetics , Autoantibodies/analysis , Autoimmunity/immunology , Female , Genotype , HLA-DQ Antigens/analysis , HLA-DQ beta-Chains , HLA-DR Antigens/analysis , Humans , Thyroglobulin/immunology , Thyroid Gland/immunology
3.
Am J Psychiatry ; 153(12): 1530-3, 1996 Dec.
Article in English | MEDLINE | ID: mdl-8942447

ABSTRACT

OBJECTIVE: The authors investigated the human leukocyte antigen (HLA) DRB1*04 gene in schizophrenic patients because it is positively associated with rheumatoid arthritis, an autoimmune disease that exhibits a strong negative association with schizophrenia. The HLA DQB1*0602 allele was also studied because of previous reports of genetic association between it and schizophrenia. Maternal HLA was investigated because of the reported association between prenatal influenza and schizophrenia and the central role of HLA molecules in the immune response to viral infections. METHOD: Polymerase chain reactions and sequence-specific oligonucleotide probes were used to genotype 94 unrelated patients with DSM-III-R schizophrenia, 92 mothers of schizophrenic offspring who were not related either to each other or to the 94 patients, and 177 healthy comparison subjects. RESULTS: The frequency of DRB1*04 alleles was significantly lower in both the schizophrenic patients and the unrelated mothers of schizophrenic offspring than in the healthy comparison subjects. No significant differences were found for DQB1*0602. CONCLUSIONS: DRB1*04 alleles may partially account for the genetic predisposition to schizophrenia. The association reported here may be explained by genetic linkage or by an autoimmune pathophysiology for a proportion of schizophrenia cases. Alternatively, it may be that maternal B lymphocytes that do not express the DR4 antigen encoded by DRB1*04 respond to influenza virus by producing antibodies that perturb neurodevelopment, thus underpinning a proportion of schizophrenia cases.


Subject(s)
Schizophrenia/genetics , Chromosomes, Human, Pair 6 , HLA-DQ Antigens , HLA-DQ beta-Chains , HLA-DR Antigens , HLA-DRB1 Chains , Humans
4.
Transplantation ; 66(1): 53-8, 1998 Jul 15.
Article in English | MEDLINE | ID: mdl-9679822

ABSTRACT

BACKGROUND: The influence of HLA mismatching in liver transplantation remains controversial. To date, few studies have focused solely on the pediatric population, and none have investigated DR and DQ mismatches using molecular genotyping. We sought to investigate HLA-A, -B, -DR, and -DQ mismatches in a large series of primary pediatric liver transplant recipients. Living-related liver transplants were excluded. METHODS: A total of 138 consecutive first liver transplants performed between January 1991 and July 1996 were studied. Minimum follow-up was 1 year, and both patient and graft survival rates were assessed. The incidence of the most common complications was analyzed. HLA-A and -B phenotyping was performed by complement-dependent microcytotoxicity or polymerase chain reaction (PCR)-sequence-specific primer protocols in 133 of 138 patients. HLA-DR and -DQ genotyping was performed by standard PCR-sequence-specific oligonucleotide and/or PCR-sequence-specific primer protocols in 135 patients. RESULTS: Overall, there was no influence of HLA mismatching on either graft or patient survival rates. However, patients with two mismatches at the A locus showed a significantly lower incidence of acute rejection than those with one A mismatch (52% vs. 72%; P < 0.03) and patients with two B locus mismatches had a better graft survival rate at 5 years than those with one mismatch (76% vs. 62%), although this was of only borderline significance (P < 0.09). No differences were found in the severity of the episodes of rejection, incidence of chronic rejection, cytomegalovirus hepatitis, and other causes of graft loss. CONCLUSION: This study indicates that HLA-A, -B, -DR, and -DQ mismatches are not detrimental in primary pediatric liver transplantation.


Subject(s)
HLA Antigens/analysis , Histocompatibility Testing , Liver Transplantation , Acute Disease , Adolescent , Child , Child, Preschool , Chronic Disease , Female , Follow-Up Studies , Graft Rejection/immunology , Graft Survival/physiology , Humans , Infant , Infant, Newborn , Male , Retrospective Studies , Survival Analysis , Treatment Outcome
5.
Transplantation ; 60(9): 1016-23, 1995 Nov 15.
Article in English | MEDLINE | ID: mdl-7491675

ABSTRACT

Early studies in liver transplantation suggested that there was no association between graft outcome or rejection and the presence of alloantibodies before transplantation. More recent reports have suggested lower graft survival rates and a higher incidence of chronic rejection in patients with IgG warm-T crossmatches. In the present study, panel reactive antibody, direct crossmatch testing, and flow cytometry were used to detect preformed antibodies in sera from 158 consecutive adult recipients of first hepatic grafts. The relationship between preformed antidonor antibodies and liver allograft survival and rejection was determined. Twenty-six (17%) patients were panel reactive antibody (PRA)-positive before transplantation, 22 (15%) had positive donor-specific crossmatches, and 14 (9%) were positive by IgG-specific flow cytometry. Cumulative survival distribution and multivariate analysis failed to reveal any significant associations between overall graft survival and antibody status. Graft survival in patients with PRA-positive sera was 81% compared with 77% for those with PRA-negative sera, 68% for those with positive donor-specific crossmatches compared with 80% for those who were donor-specific crossmatch negative, and 79% for those who were antibody positive by flow cytometric analysis compared with 78% for those who were antibody negative. Subgroup analysis also failed to reveal any significant associations. In addition, Cox proportional hazards regression analysis failed to reveal a relationship between acute or chronic graft rejection with the presence or absence of preformed antibodies, irrespective of immunoglobulin class, cell type (T or non-T), specificity, or technique used for antibody detection. In conclusion, there appears to be no association between either donor-specific or "third-party" alloreactive IgG or IgM antibodies and liver transplant survival or rejection. These data do not indicate a need for prospective crossmatching of liver transplant recipients.


Subject(s)
Graft Rejection/immunology , Graft Survival/immunology , Histocompatibility Testing , Immunoglobulin G/immunology , Liver Transplantation/immunology , Adolescent , Adult , Aged , Antibody Specificity , Female , Flow Cytometry , Humans , Immunoglobulin G/blood , Immunoglobulin M/blood , Lymphocyte Depletion , Male , Middle Aged , Prognosis , Spleen/immunology , T-Lymphocytes/immunology
6.
Autoimmunity ; 18(4): 243-9, 1994.
Article in English | MEDLINE | ID: mdl-7858109

ABSTRACT

Susceptibility to autoimmune hepatitis is associated with the HLA-DR3 and DR4 haplotypes, but which genes are directly involved in the pathogenesis, has not been established. Low levels of complement component C4 and elevated frequencies of C4 null allotypes have been described in patients, suggesting that the C4 genes, which are closely linked with the HLA loci, may play a role. We therefore examined restriction fragment length polymorphisms in the C4 and 21-hydroxylase genes, and determined HLA-A and B phenotypes, and HLA-DR, DQ and DP genotypes in a large series of Caucasoid patients with autoimmune hepatitis and matched controls. A DNA deletion of the C4A gene and the 21-hydroxylase A pseudogene was found to be present in 50% of patients compared to 23% of controls (Pc < 0.005, relative risk = 3.3). This increase, however, appears to be due to linkage disequilibrium with HLA-DR52a which was most strongly associated with the disease. Complete C4A deficiency, determined by homozygosity for the deletion increased the risk to 18.1 (16% versus 1%, Pc < 0.005), suggesting an additional role for C4 in disease susceptibility. C4 deletions were associated with an increased mortality and tendency to relapse whilst on treatment but did not correlate with age of onset of disease. Our data suggest that MHC-encoded susceptibility to autoimmune hepatitis is polygenic, involving the HLA-DR genes plus other loci, and C4 deficiency may be a marker of disease susceptibility and/or severity.


Subject(s)
Autoimmune Diseases/genetics , Complement C4/genetics , Hepatitis/genetics , Polymorphism, Restriction Fragment Length , Steroid 21-Hydroxylase/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Child , Child, Preschool , Disease Susceptibility , Female , Gene Deletion , Genetic Heterogeneity , HLA Antigens/genetics , Haplotypes/genetics , Hepatitis/immunology , Humans , Male , Middle Aged
7.
Am J Clin Pathol ; 116(1): 63-71, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11447753

ABSTRACT

We studied small bowel biopsy specimens with architecturally normal villi from 78 adult patients with potential gluten sensitivity (GS) and correlated them with outcome to characterize morphologic features that would allow a pathologist to suggest GS. No patient had a previous GS diagnosis. Twelve study patients had GS. The mean number of intraepithelial lymphocytes (IELs) per 20 enterocytes from the tips of 5 random villi was significantly greater in GS than non-GS biopsy samples, but the groups overlapped significantly, making the number diagnostically useful only when markedly increased. Crypt mitoses counts had similar relationships. Twelve patients had an even distribution of IELs along villus sides and over tips (3/66 [5%] non-GS patients, 9/12 [75%] GS patients). Non-GS patients had a decrescendo pattern of IELs along the sides of villi. Architecturally normal small bowel biopsy specimens with an appreciable, continuous, even distribution of IELs along the sides and tips of villi and a mean of 12 or more IELs in the tips of several villi are suggestive of GS. Pathologists should be watchful for these morphologic features in small bowel biopsy specimens to suggest GS.


Subject(s)
Celiac Disease/pathology , Duodenum/pathology , Adolescent , Adult , Biopsy , Cell Count , Enterocytes/pathology , Female , Humans , Lymphocytes/pathology , Male , Microvilli/pathology , Reference Values
8.
Am J Clin Pathol ; 112(1): 69-74, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10396288

ABSTRACT

Because of the widespread use of keratin 34 beta E-12 to assist in the distinction between benign acini and malignant glands, the lack of immunoreactivity of benign prostatic acini are important issues. We studied midprostate whole-mount sections from 21 low-volume adenocarcinoma radical prostatectomy specimens with keratin 34 beta E-12. We marked out benign 0.25-cm2 areas in the peripheral and transition zones and counted the number of small acini immunoreactive with keratin 34 beta E-12 to a total of 50 acini within each area. Small benign acini from nonatrophic peripheral zone lobules of 3 prostate specimens were examined by electron microscopy. The median number of immunoreactive acini in each region was 49. The nonreactive acini were always the most peripheral acini in a lobule, a small cluster of outpouched acini furthest from a large duct, or the terminal end of a large duct. More proximal acini had a discontinuous pattern of immunoreactivity. Electron microscopy showed occasional acini with luminal cells abutting the basement membrane, without the interposition of basal cell cytoplasm, and other acini with extremely attenuated basal cell cytoplasmic processes containing sparse bundles of intermediate filaments. The basal cell layer becomes attenuated toward the periphery of some lobules and duct outpouchings, producing nonreactive acini adjacent to discontinuously reactive acini.


Subject(s)
Adenocarcinoma/metabolism , Keratins/metabolism , Prostatic Neoplasms/metabolism , Adenocarcinoma/pathology , Adenocarcinoma/surgery , Epithelial Cells/ultrastructure , Humans , Immunoenzyme Techniques , Male , Microscopy, Electron , Prostate/metabolism , Prostate/pathology , Prostatectomy , Prostatic Neoplasms/pathology , Prostatic Neoplasms/surgery
9.
Am J Clin Pathol ; 108(6): 625-32, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9384443

ABSTRACT

Hepatitis G virus (HGV) is a recently described, parenterally spread, positive-strand RNA virus of the Flaviviridae family. There is a high rate of HGV coinfection in patients with hepatitis C virus (HCV). Whether HGV can cause or is pathogenetically related to clinically apparent chronic liver disease, or whether HGV alters the course of hepatitis C in patients who are coinfected with both viruses is unknown. We studied 13 biopsy specimens from 11 patients coinfected with HGV and HCV and compared them with 15 biopsy specimens from a group of patients infected only with HCV who were matched for age, sex, disease duration, and transmission mode to characterize the histologic features of coinfected liver biopsy specimens and to look for any histologic features that might allow identification of coinfected patients. Three of the biopsy specimens from coinfected patients had a modified histologic activity index score of minimal chronic hepatitis, three of mild, two of mild/moderate, and five of moderate chronic hepatitis. Bile duct injury was absent in seven specimens, minimal in five, and mild in one. The biopsy specimens from patients who were coinfected with HGV and HCV had similar histologic features to the biopsy specimens of patients infected with HCV alone. There were no detectable histologic differences between the biopsy specimens from the two patient groups. The P values for the statistical comparisons confirmed this impression. In addition, no group of histologic features distinguished the coinfected patient group from the control group. Any suspicion that a clinician might have about the presence of HGV requires confirmation by reverse transcriptase-polymerase chain reaction testing of serum samples. Our results suggest that HGV most likely does not actively participate in the cytotoxic effects of chronic hepatitis or does so by a mechanism as yet undefined. Although HGV can cause chronic infection, the present study provides no evidence that it causes or contributes to chronic hepatitis.


Subject(s)
Hepatitis C/pathology , Hepatitis, Chronic/pathology , Hepatitis/pathology , Hepatitis/virology , Biopsy , Hepatitis, Chronic/virology , Humans , Liver/pathology , Liver Cirrhosis/pathology , Retrospective Studies
10.
Schizophr Res ; 49(1-2): 73-8, 2001 Apr 15.
Article in English | MEDLINE | ID: mdl-11343866

ABSTRACT

Our goal was to evaluate the role of HLA in the risk of developing schizophrenia, in a Han Chinese population. In several Japanese studies, there is evidence of association with DR1 and schizophrenia. A variety of other associations have been reported in other populations, including negative associations with DQbeta(*)0602 and positive associations with DR1(*)0101. Using sequence specific oligonucleotides, we genotyped four HLA markers (DRB1, DQA1, DQB1 and DPB1) in 165 family trios, consisting of Han Chinese schizophrenic subjects and their parents. Individual markers were analysed for transmission distortion in the trios using the transmission disequilibrium test. Multiple haplotype transmission was performed using the program TRANSMIT v2.5. The four markers were in strong linkage disequilibrium with each other (P value from 0.002 to 0). There was no evidence of overall transmission disequilibrium for each of the four loci. For DRB1, we did not find transmission distortion for the DRB1(*)04 and DRB1(*)08 alleles, as reported previously, but the DRB1(*)03 allele was preferentially not transmitted (P=0.009), and the DRB1(*)13 allele was preferentially transmitted from parents to schizophrenic offspring (P=0.041). Using haplotypes of pairs of markers, a significant global P value of 0.019 was achieved when using DRB1 and DQA1, mainly as a result of the excess transmission of DRB1(*)13-DQA1(*)01 (P=0.012) and a deficit in transmission of DRB1(*)03-DQA1(*)05 (P=0.002). In summary, we did not confirm any of the specific HLA allelic associations reported previously in Japanese or other populations. However, our results are compatible with the view that this region of HLA might contain a susceptibility gene which is in linkage disequilibrium with DRB1 and DQA1 genes.


Subject(s)
Gene Frequency/genetics , HLA Antigens/genetics , Haplotypes/genetics , Linkage Disequilibrium/genetics , Polymorphism, Genetic/genetics , Schizophrenia/ethnology , Schizophrenia/genetics , Adolescent , Adult , China/epidemiology , Chromosomes, Human, Pair 6/genetics , HLA-B Antigens/genetics , HLA-DQ Antigens/genetics , HLA-DQ alpha-Chains , HLA-DQ beta-Chains , HLA-DR Antigens/genetics , Humans , Middle Aged , Molecular Sequence Data
11.
Schizophr Res ; 32(2): 75-80, 1998 Jul 27.
Article in English | MEDLINE | ID: mdl-9713901

ABSTRACT

Patients with schizophrenia rarely develop rheumatoid arthritis, an autoimmune disease that exhibits genetic association with the HLA DRB1*04 gene. We previously investigated the hypothesis that schizophrenia is negatively associated with DRB1*04, and found that only half the expected number of schizophrenic patients had this gene when compared with controls. We now report the results of DRB1*04 genotyping in pedigrees multiply affected with schizophrenia. Polymerase chain reaction amplification and sequence-specific oligonucleotide probes were used to determine the DRB1 genotypes of the 187 members of 23 pedigrees multiply affected with RDC schizophrenia. DQA1, DQB1 and DPB1 genotypes were similarly determined. We analysed data using the extended transmission/disequilibrium test and found a trend for the preferential non-transmission of DRB1*04 alleles from heterozygous parents to their schizophrenic offspring (16 of 23 alleles not transmitted, chi 2 = 3.5, p = 0.06). We found no evidence for a gene of major effect using GENEHUNTER for parametric and non-parametric linkage analysis. The results from this small sample need to be interpreted with caution, but they are in keeping with previous reports and suggest that HLA DRB1*04 alleles may be associated with a reduced risk of schizophrenia.


Subject(s)
Chromosomes, Human, Pair 6/genetics , HLA-DR Antigens/genetics , Linkage Disequilibrium/genetics , Schizophrenia/genetics , Alleles , Chromosome Mapping , Genotype , HLA-DRB1 Chains , Humans , Pedigree , Polymerase Chain Reaction
12.
Can J Ophthalmol ; 27(4): 197-9, 1992 Jun.
Article in English | MEDLINE | ID: mdl-1633594

ABSTRACT

Right corneal melting and scleral necrosis developed in a 77-year-old man 5 months after pterygium excision followed by topical administration of mitomycin C drops (0.4 mg/mL) for 4 weeks. We believe that these were delayed complications of the mitomycin C therapy, and we caution against prolonged use of the drug postoperatively.


Subject(s)
Cornea/pathology , Mitomycin/adverse effects , Pterygium/surgery , Administration, Topical , Aged , Humans , Keratoplasty, Penetrating , Male , Mitomycin/administration & dosage , Necrosis/chemically induced , Postoperative Complications/prevention & control , Pterygium/prevention & control , Recurrence , Sclera/pathology , Visual Acuity
13.
Am J Orthopsychiatry ; 68(4): 630-8, 1998 Oct.
Article in English | MEDLINE | ID: mdl-9809122

ABSTRACT

Effectance motivation was examined in 26 inner-city children attending Head Start, 26 inner-city children with no preschool experience, and 26 middle-class children attending private preschool. Head Start children scored higher on measures of effectance motivation than did their non-Head Start counterparts; their levels were lower, however, than those of the middle-class children. Implications of the findings are discussed.


Subject(s)
Early Intervention, Educational , Motivation , Child , Child Development , Child, Preschool , Female , Humans , Male , Poverty , Self Concept , Urban Population
17.
Hepatology ; 20(1 Pt 1): 225-39, 1994 Jul.
Article in English | MEDLINE | ID: mdl-8020893

ABSTRACT

The dual observations that human leukocyte antigens have an antigen-binding groove and that the polymorphism we study as human leukocyte antigen types is largely related to amino acid substitutions in and around that groove have provided a new focus for immunogenetic studies. In autoimmune liver disease, recent studies have described specific amino acid substitutions in the antigen-binding groove of human leukocyte antigen DR molecules that may determine both disease susceptibility, through their direct influence on antigen binding, and the severity of the disease. In autoimmune hepatitis, lysine residues at DR beta position 71 in European subjects and arginine or histidine residues at DR beta position 13 in Japanese subjects may be responsible for much human leukocyte antigen-encoded disease susceptibility. Similar claims have been made for leucine residues at DR beta 38 in primary sclerosing cholangitis and for leucine residues at DP beta 35 in Japanese patients with primary biliary cirrhosis. To date, our knowledge of genetic susceptibility to autoimmune liver disease is incomplete. Other genes may contribute to susceptibility to autoimmune liver disease--for example the contribution of TAP genes, upstream promoter sequences and class III genes on chromosome 6 and the T-cell receptor genes and complement genes elsewhere in the human genome is currently unclear. Additional information concerning the immunogenetic contribution to disease severity is needed to complete the picture.


Subject(s)
Autoimmune Diseases/genetics , Liver Diseases/genetics , Autoimmune Diseases/immunology , Cholangitis, Sclerosing/genetics , Chromosomes, Human, Pair 6 , Genes, MHC Class I , Genes, MHC Class II , Genetic Predisposition to Disease , HLA-DR Antigens/genetics , Hepatitis/genetics , Humans , Liver Cirrhosis, Biliary/genetics , Liver Diseases/immunology , T-Lymphocytes/immunology
18.
Multivariate Behav Res ; 34(2): 123-42, 1999 Apr 01.
Article in English | MEDLINE | ID: mdl-26753933

ABSTRACT

We present a simple method for generating simulated plasmodes and artificial test clusters with user-defined shape, size, and orientation. Our method differs from other cluster generation techniques in that it focuses on the validity of the cluster indicators. For J clusters, indicator validity is defined as the squared correlation ratio between the cluster indicator (i.e., the observed variable) and J-1 dummy variables. The within-cluster correlation structure and the univariate distributions of the cluster indicators are specified with procedures outlined by Fleishman (1978) and Vale and Maurelli (1983). Simulation results illustrate the utility of the method for cluster analysis evaluation research.

19.
J Hepatol ; 30(2): 237-41, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10068102

ABSTRACT

BACKGROUND/AIMS: Primary sclerosing cholangitis is associated with the HLA haplotypes A1-B8-DRB3*0101-DRB1*0301-DQA1*0501-DQB1*0201 and DRB3*0101-DRB1*1301-DQA1*0103-DQB1* 0603. However, the interpretation of these genetic associations is controversial. One explanation may be that HLA-encoded susceptibility is due to other genes carried on these haplotypes such as the HLA class III tumor necrosis factor genes. The aim of the study was to investigate tumor necrosis factor genetics in a large series of well-defined patients. METHODS: One hundred and ten HLA genotyped patients and 126 control subjects were studied by polymerase chain reaction genotyping for 3 different tumor necrosis factor gene polymorphisms: -308, -238 and an Ncol restriction fragment length polymorphism in the lymphotoxin alpha gene. RESULTS: Overall, 58% of patients had the TNF2 allele, compared with 29% of controls, p(c) = 0.0001. No association was found with either of the other tumor necrosis factor polymorphisms examined. TNF2 was significantly increased in the presence of B8 and DRB3*0101 only, and was independent of DRB1*0301 (p(c)<0.04). The associations with B8 and TNF2 were stronger than the associations with any of the HLA class II alleles examined. CONCLUSION: HLA-encoded genetic susceptibility to primary sclerosing cholangitis may be determined by polymorphism within the HLA class III region, in particular with the TNF2 allele.


Subject(s)
Cholangitis, Sclerosing/genetics , Polymorphism, Genetic/genetics , Tumor Necrosis Factor-alpha/genetics , Adult , Alleles , Cholangitis, Sclerosing/immunology , Female , HLA-A1 Antigen/analysis , HLA-B8 Antigen/analysis , HLA-DR Antigens/analysis , HLA-DRB1 Chains , Humans , Male
20.
Eur J Immunogenet ; 28(3): 425-8, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11422420

ABSTRACT

Although the aetiology of chronic fatigue syndrome is controversial, evidence that infective agents including viruses may have a role in the development of the condition has led to studies seeking an association with the immunomodulatory HLA genes. In the present study, we sought to extend previous work using a well-characterized patient group and modern HLA genotyping techniques. Fifty-eight patients were phenotyped for HLA A and B by microcytotoxicity and genotyped for HLA DRB, DQB and DPB by PCR oligoprobing, and the frequencies of antigens so assigned were compared with those from a control group of 134. No significant differences in HLA frequencies were found between patient and control groups. Thus, this study does not confirm previous findings of an HLA association with chronic fatigue syndrome, suggesting that neither presentation of viral antigen by HLA class I nor antigen processing genes in the HLA region is a major contributory factor in the development of the disease.


Subject(s)
Fatigue Syndrome, Chronic/genetics , Genotype , Alleles , Female , HLA-A Antigens/genetics , HLA-B Antigens/genetics , HLA-DP Antigens/genetics , HLA-DQ Antigens/genetics , HLA-DR Antigens/genetics , Humans , Male , Phenotype
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