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1.
Nat Genet ; 30(4): 441-5, 2002 Apr.
Article in English | MEDLINE | ID: mdl-11889467

ABSTRACT

Mental retardation and epilepsy often occur together. They are both heterogeneous conditions with acquired and genetic causes. Where causes are primarily genetic, major advances have been made in unraveling their molecular basis. The human X chromosome alone is estimated to harbor more than 100 genes that, when mutated, cause mental retardation. At least eight autosomal genes involved in idiopathic epilepsy have been identified, and many more have been implicated in conditions where epilepsy is a feature. We have identified mutations in an X chromosome-linked, Aristaless-related, homeobox gene (ARX), in nine families with mental retardation (syndromic and nonspecific), various forms of epilepsy, including infantile spasms and myoclonic seizures, and dystonia. Two recurrent mutations, present in seven families, result in expansion of polyalanine tracts of the ARX protein. These probably cause protein aggregation, similar to other polyalanine and polyglutamine disorders. In addition, we have identified a missense mutation within the ARX homeodomain and a truncation mutation. Thus, it would seem that mutation of ARX is a major contributor to X-linked mental retardation and epilepsy.


Subject(s)
Drosophila Proteins/genetics , Epilepsy/genetics , Intellectual Disability/genetics , Mutation , X Chromosome , Amino Acid Sequence , Animals , Family Health , Female , Haplotypes , Humans , Male , Mice , Models, Genetic , Molecular Sequence Data , Mutation, Missense , Nucleic Acid Hybridization , Pedigree , Poly A/genetics , Sequence Homology, Amino Acid , Tissue Distribution , Transcription, Genetic
2.
MicroPubl Biol ; 20232023.
Article in English | MEDLINE | ID: mdl-37008727

ABSTRACT

Mutations in TDP-43 are known to cause Amyotrophic Lateral Sclerosis (ALS) and Frontotemporal Dementia (FTD). TDP-43 binds to and regulates splicing of several RNA including Zmynd11 . Zmynd11 is a transcriptional repressor and a potential E3 ubiquitin ligase family member, known for its role in neuron and muscle differentiation. Mutations in Zmynd11 have been associated with autism with significant developmental motor delays, intellectual disability, and ataxia. Here, we show that Zmynd11 is aberrantly spliced in the brain and spinal cord of transgenic mice overexpressing a mutant human TDP-43 (A315T), and that these changes occur before the onset of motor symptoms.

3.
Behav Brain Funct ; 8: 25, 2012 May 28.
Article in English | MEDLINE | ID: mdl-22640745

ABSTRACT

BACKGROUND: This study explored the association between three measures of working memory ability and genetic variation in a range of catecholamine genes in a sample of children with ADHD. METHODS: One hundred and eighteen children with ADHD performed three working memory measures taken from the CANTAB battery (Spatial Span, Delayed-match-to-sample, and Spatial Working Memory). Associations between performance on working memory measures and allelic variation in catecholamine genes (including those for the noradrenaline transporter [NET1], the dopamine D4 and D2 receptor genes [DRD4; DRD2], the gene encoding dopamine beta hydroxylase [DBH] and catechol-O-methyl transferase [COMT]) were investigated using regression models that controlled for age, IQ, gender and medication status on the day of test. RESULTS: Significant associations were found between performance on the delayed-match-to-sample task and COMT genotype. More specifically, val/val homozygotes produced significantly more errors than did children who carried a least one met allele. There were no further associations between allelic variants and performance across the other working memory tasks. CONCLUSIONS: The working memory measures employed in the present study differed in the degree to which accurate task performance depended upon either the dynamic updating and/or manipulation of items in working memory, as in the spatial span and spatial working memory tasks, or upon the stable maintenance of representations, as in the delay-match-to-sample task. The results are interpreted as evidence of a relationship between tonic dopamine levels associated with the met COMT allele and the maintenance of stable working memory representations required to perform the delayed-match-to-sample-task.


Subject(s)
Attention Deficit Disorder with Hyperactivity/genetics , Catechol O-Methyltransferase/genetics , Genetic Variation/genetics , Memory, Short-Term/physiology , Adolescent , Alleles , Child , Female , Genotype , Heterozygote , Homozygote , Humans , Male , Neuropsychological Tests , Pattern Recognition, Visual/physiology , Phenotype , Reaction Time/genetics , Valine/genetics
4.
Neuroimage ; 55(2): 455-61, 2011 Mar 15.
Article in English | MEDLINE | ID: mdl-21185943

ABSTRACT

Amyotrophic lateral sclerosis (ALS) is characterized by selective degeneration of motor neurons. Here we examine the ability of magnetic resonance imaging (MRI) to measure axonal degeneration in the lumbar spinal cord of the SOD1 mouse model of ALS. Diffusion tensor imaging (DTI) was successful in detecting axonal spinal cord damage in vivo. Fractional anisotropy (FA) values were reduced exclusively in the ventral white matter tracts of the lumbar spinal cord of ALS-affected SOD1 mice compared to wild-type littermates, with this effect becoming more pronounced with disease progression. The reduced FA values were therefore limited to white matter tracts arising from the motor neurons, whereas sensory white matter fibers were preserved. Significant decreases in water diffusion parallel to the white matter fibers or axial diffusivity were observed in the SOD1 mice, which can be attributed to the axonal degeneration observed by electron microscopy. At the same time, radial diffusivity perpendicular to the spinal column increased in the SOD1 mice, reflecting reduced myelination. These results demonstrate the usefulness of MRI in tracking disease progression in live animals and will aid in the assessment of treatment efficacy. This method could also potentially be adapted to aid the diagnosis and assessment of ALS progression in humans.


Subject(s)
Amyotrophic Lateral Sclerosis/pathology , Diffusion Tensor Imaging , Nerve Degeneration/pathology , Spinal Cord/pathology , Animals , Anisotropy , Disease Models, Animal , Disease Progression , Humans , Mice , Mice, Inbred C57BL , Mice, Transgenic , Microscopy, Electron, Transmission , Motor Neurons/pathology , Superoxide Dismutase/genetics , Superoxide Dismutase-1
5.
Neuroimage ; 58(1): 69-74, 2011 Sep 01.
Article in English | MEDLINE | ID: mdl-21689764

ABSTRACT

Amyotrophic lateral sclerosis (ALS) is characterized by selective degeneration of motor neurons. Current imaging studies have concentrated on areas of the brain and spinal cord that contain mixed populations of sensory and motor neurons. In this study, ex vivo magnetic resonance microimaging (MRM) was used to separate motor and sensory components by visualizing individual dorsal and ventral roots in fixed spinal cords. MRM at 15µm in plane resolution enabled the axons of pure populations of sensory and motor neurons to be measured in the lumbar region of the SOD1 mouse model of ALS. MRM signal intensity increased by 38.3% (p<0.05) exclusively in the ventral motor nerve roots of the lumbar spinal cord of ALS-affected SOD1 mice compared to wildtype littermates. The hyperintensity was therefore limited to white matter tracts arising from the motor neurons, whereas sensory white matter fibers were unchanged. Significant decreases in ventral nerve root volume were also detected in the SOD1 mice, which correlated with the axonal degeneration observed by microscopy. These results demonstrate the usefulness of MRM in visualizing the ultrastructure of the mouse spinal cord. The detailed 3D anatomy allowed the processes of pure populations of sensory and motor neurons to be compared.


Subject(s)
Amyotrophic Lateral Sclerosis/genetics , Amyotrophic Lateral Sclerosis/pathology , Motor Neurons/pathology , Nerve Degeneration/pathology , Spinal Cord/pathology , Spinal Nerve Roots/pathology , Superoxide Dismutase/genetics , Animals , Cell Count , Humans , Image Processing, Computer-Assisted , Magnetic Resonance Imaging , Mice , Mice, Inbred C57BL , Mice, Transgenic , Superoxide Dismutase-1
6.
Am J Hum Genet ; 83(5): 572-81, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18976727

ABSTRACT

Progressive myoclonus epilepsy (PME) is a syndrome characterized by myoclonic seizures (lightning-like jerks), generalized convulsive seizures, and varying degrees of neurological decline, especially ataxia and dementia. Previously, we characterized three pedigrees of individuals with PME and ataxia, where either clinical features or linkage mapping excluded known PME loci. This report identifies a mutation in PRICKLE1 (also known as RILP for REST/NRSF interacting LIM domain protein) in all three of these pedigrees. The identified PRICKLE1 mutation blocks the PRICKLE1 and REST interaction in vitro and disrupts the normal function of PRICKLE1 in an in vivo zebrafish overexpression system. PRICKLE1 is expressed in brain regions implicated in epilepsy and ataxia in mice and humans, and, to our knowledge, is the first molecule in the noncanonical WNT signaling pathway to be directly implicated in human epilepsy.


Subject(s)
Ataxia/genetics , Homozygote , Mutation , Myoclonic Epilepsies, Progressive/genetics , Tumor Suppressor Proteins/genetics , Amino Acid Sequence , Chromosomes, Human, Pair 12 , Consanguinity , Genes, Recessive , Genetic Markers , Haplotypes , Humans , LIM Domain Proteins , Male , Microsatellite Repeats , Middle Aged , Molecular Sequence Data , Pedigree , Physical Chromosome Mapping , Syndrome
7.
BMC Mol Cell Biol ; 21(1): 26, 2020 Apr 15.
Article in English | MEDLINE | ID: mdl-32293262

ABSTRACT

BACKGROUND: Progesterone receptor membrane component 1 (PGRMC1) is often elevated in cancers, and exists in alternative states of phosphorylation. A motif centered on PGRMC1 Y180 was evolutionarily acquired concurrently with the embryological gastrulation organizer that orchestrates vertebrate tissue differentiation. RESULTS: Here, we show that mutagenic manipulation of PGRMC1 phosphorylation alters cell metabolism, genomic stability, and CpG methylation. Each of several mutants elicited distinct patterns of genomic CpG methylation. Mutation of S57A/Y180/S181A led to increased net hypermethylation, reminiscent of embryonic stem cells. Pathways enrichment analysis suggested modulation of processes related to animal cell differentiation status and tissue identity, as well as cell cycle control and ATM/ATR DNA damage repair regulation. We detected different genomic mutation rates in culture. CONCLUSIONS: A companion manuscript shows that these cell states dramatically affect protein abundances, cell and mitochondrial morphology, and glycolytic metabolism. We propose that PGRMC1 phosphorylation status modulates cellular plasticity mechanisms relevant to early embryological tissue differentiation.


Subject(s)
Phosphorylation , Receptors, Progesterone , Animals , Cell Differentiation , Cell Line , DNA Methylation , Disease , Embryology , Epigenomics , Humans , Membrane Proteins/biosynthesis , Membrane Proteins/metabolism , Mice , Mutation , Mutation Rate , Protein Processing, Post-Translational , Receptors, Progesterone/biosynthesis , Receptors, Progesterone/metabolism
8.
J Neurosci ; 28(20): 5240-7, 2008 May 14.
Article in English | MEDLINE | ID: mdl-18480280

ABSTRACT

The regulated production of neurons in the hippocampus throughout life underpins important brain functions such as learning and memory. Surprisingly, however, studies have so far failed to identify a resident hippocampal stem cell capable of providing the renewable source of these neurons. Here, we report that depolarizing levels of KCl produce a threefold increase in the number of neurospheres generated from the adult mouse hippocampus. Most interestingly, however, depolarizing levels of KCl led to the emergence of a small subpopulation of precursors (approximately eight per hippocampus) with the capacity to generate very large neurospheres (> 250 microm in diameter). Many of these contained cells that displayed the cardinal properties of stem cells: multipotentiality and self-renewal. In contrast, the same conditions led to the opposite effect in the other main neurogenic region of the brain, the subventricular zone, in which neurosphere numbers decreased by approximately 40% in response to depolarizing levels of KCl. Most importantly, we also show that the latent hippocampal progenitor population can be activated in vivo in response to prolonged neural activity found in status epilepticus. This work provides the first direct evidence of a latent precursor and stem cell population in the adult hippocampus, which is able to be activated by neural activity. Because the latent population is also demonstrated to reside in the aged animal, defining the precise mechanisms that underlie its activation may provide a means to combat the cognitive deficits associated with a decline in neurogenesis.


Subject(s)
Action Potentials/physiology , Hippocampus/physiology , Neurons/physiology , Stem Cells/physiology , Synaptic Transmission/physiology , Action Potentials/drug effects , Aging/pathology , Animals , Cell Proliferation/drug effects , Cells, Cultured , Cognition Disorders/drug therapy , Cognition Disorders/etiology , Cognition Disorders/physiopathology , Hippocampus/cytology , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Mice, Transgenic , Neuronal Plasticity/drug effects , Neuronal Plasticity/physiology , Neurons/cytology , Neurons/drug effects , Potassium Chloride/pharmacology , Spheroids, Cellular , Stem Cells/cytology , Stem Cells/drug effects , Synaptic Transmission/drug effects
9.
Brain ; 130(Pt 1): 100-9, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17020904

ABSTRACT

SCN1B, the gene encoding the sodium channel beta 1 subunit, was the first gene identified for generalized epilepsy with febrile seizures plus (GEFS+). Only three families have been published with SCN1B mutations. Here, we present four new families with SCN1B mutations and characterize the associated phenotypes. Analysis of SCN1B was performed on 402 individuals with various epilepsy syndromes. Four probands with missense mutations were identified. Detailed electroclinical phenotyping was performed on all available affected family members including quantitative MR imaging in those with temporal lobe epilepsy (TLE). Two new families with the original C121W SCN1B mutation were identified; novel mutations R85C and R85H were each found in one family. The following phenotypes occurred in the six families with SCN1B missense mutations: 22 febrile seizures, 20 febrile seizures plus, five TLE, three other GEFS+ phenotypes, two unclassified and ten unaffected individuals. All individuals with confirmed TLE had the C121W mutation; two underwent temporal lobectomy (one with hippocampal sclerosis and one without) and both are seizure free. We confirm the role of SCN1B in GEFS+ and show that the GEFS+ spectrum may include TLE alone. TLE with an SCN1B mutation is not a contraindication to epilepsy surgery.


Subject(s)
Epilepsy, Generalized/genetics , Epilepsy, Temporal Lobe/genetics , Mutation, Missense/genetics , Sodium Channels/genetics , Adolescent , Adult , Age of Onset , Child , Child, Preschool , Family Health , Female , Genotype , Humans , Infant , Magnetic Resonance Imaging/methods , Male , Pedigree , Phenotype , Point Mutation/genetics , Seizures/genetics , Voltage-Gated Sodium Channel beta-1 Subunit
10.
Genome Med ; 9(1): 97, 2017 Nov 17.
Article in English | MEDLINE | ID: mdl-29149916

ABSTRACT

BACKGROUND: Amyotrophic lateral sclerosis (ALS) is a progressive neurological disease characterised by the degeneration of motor neurons, which are responsible for voluntary movement. There remains limited understanding of disease aetiology, with median survival of ALS of three years and no effective treatment. Identifying genes that contribute to ALS susceptibility is an important step towards understanding aetiology. The vast majority of published human genetic studies, including for ALS, have used samples of European ancestry. The importance of trans-ethnic studies in human genetic studies is widely recognised, yet a dearth of studies of non-European ancestries remains. Here, we report analyses of novel whole-exome sequencing (WES) data from Chinese ALS and control individuals. METHODS: WES data were generated for 610 ALS cases and 460 controls drawn from Chinese populations. We assessed evidence for an excess of rare damaging mutations at the gene level and the gene set level, considering only singleton variants filtered to have allele frequency less than 5 × 10-5 in reference databases. To meta-analyse our results with a published study of European ancestry, we used a Cochran-Mantel-Haenszel test to compare gene-level variant counts in cases vs controls. RESULTS: No gene passed the genome-wide significance threshold with ALS in Chinese samples alone. Combining rare variant counts in Chinese with those from the largest WES study of European ancestry resulted in three genes surpassing genome-wide significance: TBK1 (p = 8.3 × 10-12), SOD1 (p = 8.9 × 10-9) and NEK1 (p = 1.1 × 10-9). In the Chinese data alone, SOD1 and NEK1 were nominally significantly associated with ALS (p = 0.04 and p = 7 × 10-3, respectively) and the case/control frequencies of rare coding variants in these genes were similar in Chinese and Europeans (SOD1: 1.5%/0.2% vs 0.9%/0.1%, NEK1 1.8%/0.4% vs 1.9%/0.8%). This was also true for TBK1 (1.2%/0.2% vs 1.4%/0.4%), but the association with ALS in Chinese was not significant (p = 0.14). CONCLUSIONS: While SOD1 is already recognised as an ALS-associated gene in Chinese, we provide novel evidence for association of NEK1 with ALS in Chinese, reporting variants in these genes not previously found in Europeans.


Subject(s)
Amyotrophic Lateral Sclerosis/genetics , NIMA-Related Kinase 1/genetics , Asian People/genetics , Genetic Predisposition to Disease , Humans , Risk , Exome Sequencing
11.
Nat Commun ; 8(1): 611, 2017 09 20.
Article in English | MEDLINE | ID: mdl-28931804

ABSTRACT

Cross-ethnic genetic studies can leverage power from differences in disease epidemiology and population-specific genetic architecture. In particular, the differences in linkage disequilibrium and allele frequency patterns across ethnic groups may increase gene-mapping resolution. Here we use cross-ethnic genetic data in sporadic amyotrophic lateral sclerosis (ALS), an adult-onset, rapidly progressing neurodegenerative disease. We report analyses of novel genome-wide association study data of 1,234 ALS cases and 2,850 controls. We find a significant association of rs10463311 spanning GPX3-TNIP1 with ALS (p = 1.3 × 10-8), with replication support from two independent Australian samples (combined 576 cases and 683 controls, p = 1.7 × 10-3). Both GPX3 and TNIP1 interact with other known ALS genes (SOD1 and OPTN, respectively). In addition, GGNBP2 was identified using gene-based analysis and summary statistics-based Mendelian randomization analysis, although further replication is needed to confirm this result. Our results increase our understanding of genetic aetiology of ALS.Amyotrophic lateral sclerosis (ALS) is a rapidly progressing neurodegenerative disease. Here, Wray and colleagues identify association of the GPX3-TNIP1 locus with ALS using cross-ethnic meta-analyses.


Subject(s)
Amyotrophic Lateral Sclerosis/genetics , Asian People/genetics , DNA-Binding Proteins/genetics , Glutathione Peroxidase/genetics , White People/genetics , Amyotrophic Lateral Sclerosis/ethnology , Australia , China , Genome-Wide Association Study , High-Throughput Nucleotide Sequencing , Humans , Sequence Analysis, DNA
13.
Brain ; 128(Pt 3): 652-8, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15634728

ABSTRACT

Progressive myoclonus epilepsy (PME) has a number of causes, of which Unverricht-Lundborg disease (ULD) is the most common. ULD has previously been mapped to a locus on chromosome 21 (EPM1). Subsequently, mutations in the cystatin B gene have been found in most cases. In the present work we identified an inbred Arab family with a clinical pattern compatible with ULD, but mutations in the cystatin B gene were absent. We sought to characterize the clinical and molecular features of the disorder. The family was studied by multiple field trips to their town to clarify details of the complex consanguineous relationships and to personally examine the family. DNA was collected for subsequent molecular analyses from 21 individuals. A genome-wide screen was performed using 811 microsatellite markers. Homozygosity mapping was used to identify loci of interest. There were eight affected individuals. Clinical onset was at 7.3 +/- 1.5 years with myoclonic or tonic-clonic seizures. All had myoclonus that progressed in severity over time and seven had tonic-clonic seizures. Ataxia, in addition to myoclonus, occurred in all. Detailed cognitive assessment was not possible, but there was no significant progressive dementia. There was intrafamily variation in severity; three required wheelchairs in adult life; the others could walk unaided. MRI, muscle and skin biopsies on one individual were unremarkable. We mapped the family to a 15-megabase region at the pericentromeric region of chromosome 12 with a maximum lod score of 6.32. Although the phenotype of individual subjects was typical of ULD, the mean age of onset (7.3 years versus 11 years for ULD) was younger. The locus on chromosome 12 does not contain genes for any other form of PME, nor does it have genes known to be related to cystatin B. This represents a new form of PME and we have designated the locus as EPM1B.


Subject(s)
Unverricht-Lundborg Syndrome/genetics , Adolescent , Adult , Chromosome Mapping/methods , Chromosomes, Human, Pair 12/genetics , Disease Progression , Electroencephalography , Female , Genotype , Homozygote , Humans , Lod Score , Magnetic Resonance Imaging , Male , Pedigree , Unverricht-Lundborg Syndrome/pathology , Unverricht-Lundborg Syndrome/physiopathology
14.
Neurology ; 86(8): 713-22, 2016 Feb 23.
Article in English | MEDLINE | ID: mdl-26802095

ABSTRACT

OBJECTIVE: To analyze the clinical syndromes and inheritance patterns of multiplex families with epilepsy toward the ultimate aim of uncovering the underlying molecular genetic basis. METHODS: Following the referral of families with 2 or more relatives with epilepsy, individuals were classified into epilepsy syndromes. Families were classified into syndromes where at least 2 family members had a specific diagnosis. Pedigrees were analyzed and molecular genetic studies were performed as appropriate. RESULTS: A total of 211 families were ascertained over an 11-year period in Israel. A total of 169 were classified into broad familial epilepsy syndrome groups: 61 generalized, 22 focal, 24 febrile seizure syndromes, 33 special syndromes, and 29 mixed. A total of 42 families remained unclassified. Pathogenic variants were identified in 49/211 families (23%). The majority were found in established epilepsy genes (e.g., SCN1A, KCNQ2, CSTB), but in 11 families, this cohort contributed to the initial discovery (e.g., KCNT1, PCDH19, TBC1D24). We expand the phenotypic spectrum of established epilepsy genes by reporting a familial LAMC3 homozygous variant, where the predominant phenotype was epilepsy with myoclonic-atonic seizures, and a pathogenic SCN1A variant in a family where in 5 siblings the phenotype was broadly consistent with Dravet syndrome, a disorder that usually occurs sporadically. CONCLUSION: A total of 80% of families were successfully classified, with pathogenic variants identified in 23%. The successful characterization of familial electroclinical and inheritance patterns has highlighted the value of studying multiplex families and their contribution towards uncovering the genetic basis of the epilepsies.


Subject(s)
Epilepsy/epidemiology , Epilepsy/genetics , Family , Genetic Predisposition to Disease/epidemiology , Genetic Predisposition to Disease/genetics , Genetic Testing/methods , Cohort Studies , Epilepsy/diagnosis , Female , Humans , Israel/epidemiology , Male , Pedigree
15.
Psychopharmacology (Berl) ; 225(4): 895-902, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23052569

ABSTRACT

Pharmacological evidence suggests the importance of noradrenergic and other monoaminergic neurotransmitters in the aetiology and treatment of attention deficit hyperactivity disorder (ADHD). Until recently, the genes of the noradrenergic pathway were not intensively investigated in ADHD compared to dopaminergic and serotonergic candidates. In this study, 91 SNP markers of 14 noradrenergic genes (an average density of one SNP per 4.5 kbp) were examined in ADHD samples from Ireland and Australia. Although suggestive evidence of association (nominal p ≤ 0.05) with the genes SLC6A2, ADRA1A, ADRA1B and ADRA2B was observed, none remained significant after permutation adjustments. In contrast, haplotype analyses demonstrated a significant association between ADHD and a SLC6A2 haplotype comprising the markers rs36009, rs1800887, rs8049681, rs2242447 and rs9930182 (χ(2) = 9.39, p-corrected = 0.019, OR = 1.51). A rare ADRA1B haplotype made of six SNPs (rs2030373, rs6884105, rs756275, rs6892282, rs6888306 and rs13162302) was also associated (χ(2) = 7.79, p-corrected = 0.042 OR = 2.74) with the disorder. These findings provide evidence of a contribution of the noradrenaline system to the genetic aetiology of ADHD. The observed haplotype association signals may be driven by as yet unidentified functional risk variants in or around the associated regions. Functional genomic analysis is warranted to determine the biological mechanism of the observed association.


Subject(s)
Attention Deficit Disorder with Hyperactivity/genetics , Chromosome Mapping/methods , Genetic Association Studies/methods , Linkage Disequilibrium/genetics , Norepinephrine Plasma Membrane Transport Proteins/genetics , Receptors, Adrenergic, alpha-1/genetics , Adolescent , Attention Deficit Disorder with Hyperactivity/diagnosis , Attention Deficit Disorder with Hyperactivity/epidemiology , Child , Female , Humans , Male , Polymorphism, Single Nucleotide/genetics , Receptors, Adrenergic/genetics
16.
Article in English | MEDLINE | ID: mdl-23134510

ABSTRACT

Cytoplasmic inclusions containing TDP-43 are a pathological hallmark of several neurodegenerative disorders, including amyotrophic lateral sclerosis (ALS) and frontotemporal dementia. TDP-43 is an RNA binding protein involved in gene regulation through control of RNA transcription, splicing and transport. However, the function of TDP-43 in the nervous system is largely unknown and its role in the pathogenesis of ALS is unclear. The aim of this study was to identify genes in the central nervous system that are regulated by TDP-43. RNA-immunoprecipitation with anti-TDP-43 antibody, followed by microarray analysis (RIP-chip), was used to isolate and identify RNA bound to TDP-43 protein from mouse brain. This analysis produced a list of 1839 potential TDP-43 gene targets, many of which overlap with previous studies and whose functions include RNA processing and synaptic function. Immunohistochemistry demonstrated that the TDP-43 protein could be found at the presynaptic membrane of axon terminals in the neuromuscular junction in mice. In conclusion, the finding that TDP-43 binds to RNA that codes for genes related to synaptic function, together with the localization of TDP-43 protein at axon terminals, suggests a role for TDP-43 in the transport of synaptic mRNAs into distal processes.


Subject(s)
Brain/metabolism , DNA-Binding Proteins/metabolism , Presynaptic Terminals/metabolism , RNA/metabolism , Ribonucleoproteins/metabolism , Animals , DNA-Binding Proteins/analysis , Mice , Mice, Inbred C57BL , Presynaptic Terminals/chemistry , Protein Binding/physiology , RNA/analysis , Ribonucleoproteins/analysis
17.
PLoS One ; 8(4): e60274, 2013.
Article in English | MEDLINE | ID: mdl-23593184

ABSTRACT

BACKGROUND: The Coloboma mouse carries a ∼2 cM deletion encompassing the SNAP25 gene and has a hyperactive phenotype similar to that of ADHD. Such mice are 3 fold more active compared to their control littermates. Genetic association studies support a role for allelic variants of the human SNAP25 gene in predisposing to ADHD. METHODS/PRINCIPAL FINDINGS: We performed association analysis across the SNAP25 gene in 1,107 individuals (339 ADHD trios). To assess the functional relevance of the SNAP25-ADHD associated allele, we performed quantitative PCR on post-mortem tissue derived from the inferior frontal gyrus of 89 unaffected adults. Significant associations with the A allele of SNP rs362990 (χ(2) = 10, p-corrected = 0.019, OR = 1.5) and three marker haplotypes (rs6108461, rs362990 and rs362998) were observed. Furthermore, a significant additive decrease in the expression of the SNAP25 transcript as a function of the risk allele was also observed. This effect was detected at the haplotype level, where increasing copies of the ADHD-associated haplotype reduced the expression of the transcript. CONCLUSIONS: Our data show that DNA variation at SNAP25 confers risk to ADHD and reduces the expression of the transcript in a region of the brain that is critical for the regulation of attention and inhibition.


Subject(s)
DNA/genetics , Genetic Predisposition to Disease , Polymorphism, Single Nucleotide/genetics , Prefrontal Cortex/metabolism , Synaptosomal-Associated Protein 25/genetics , Adult , Animals , Attention Deficit Disorder with Hyperactivity/genetics , Child , Genetic Association Studies , Haplotypes/genetics , Humans , Linkage Disequilibrium/genetics , Male , Mice , Prefrontal Cortex/pathology , Risk Factors , Synaptosomal-Associated Protein 25/metabolism
18.
PLoS One ; 8(11): e81170, 2013.
Article in English | MEDLINE | ID: mdl-24312274

ABSTRACT

In amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration, TAR DNA binding protein 43 (TDP-43) accumulates in the cytoplasm of affected neurons and glia, where it associates with stress granules (SGs) and forms large inclusions. SGs form in response to cellular stress, including endoplasmic reticulum (ER) stress, which is induced in both familial and sporadic forms of ALS. Here we demonstrate that pharmacological induction of ER stress causes TDP-43 to accumulate in the cytoplasm, where TDP-43 also associates with SGs. Furthermore, treatment with salubrinal, an inhibitor of dephosphorylation of eukaryotic initiation factor 2-α, a key modulator of ER stress, potentiates ER stress-mediated SG formation. Inclusions of C-terminal fragment TDP-43, reminiscent of disease-pathology, form in close association with ER and Golgi compartments, further indicating the involvement of ER dysfunction in TDP-43-associated disease. Consistent with this notion, over-expression of ALS-linked mutant TDP-43, and to a lesser extent wildtype TDP-43, triggers several ER stress pathways in neuroblastoma cells. Similarly, we found an interaction between the ER chaperone protein disulphide isomerase and TDP-43 in transfected cell lysates and in the spinal cords of mutant A315T TDP-43 transgenic mice. This study provides evidence for ER stress as a pathogenic pathway in TDP-43-mediated disease.


Subject(s)
Amyotrophic Lateral Sclerosis/metabolism , Amyotrophic Lateral Sclerosis/pathology , Cytoplasm/metabolism , DNA-Binding Proteins/metabolism , Endoplasmic Reticulum Stress , Active Transport, Cell Nucleus/drug effects , Amyotrophic Lateral Sclerosis/genetics , Animals , Cell Line , Cell Nucleus/drug effects , Cell Nucleus/metabolism , Cinnamates/pharmacology , Cytoplasm/drug effects , DNA-Binding Proteins/genetics , Endoplasmic Reticulum Stress/drug effects , Golgi Apparatus/drug effects , Golgi Apparatus/metabolism , Humans , Mice , Mutation , Protein Disulfide-Isomerases/metabolism , Spinal Cord/metabolism , Thiourea/analogs & derivatives , Thiourea/pharmacology
19.
Brain ; 126(Pt 1): 230-40, 2003 Jan.
Article in English | MEDLINE | ID: mdl-12477709

ABSTRACT

Although several genes for idiopathic epilepsies from families with simple Mendelian inheritance have been found, genes for the common idiopathic generalized epilepsies, where inheritance is complex, presently are elusive. We studied a large family with epilepsy where the two main phenotypes were childhood absence epilepsy (CAE) and febrile seizures (FS), which offered a special opportunity to identify epilepsy genes. A total of 35 family members had seizures over four generations. The phenotypes comprised typical CAE (eight individuals); FS alone (15), febrile seizures plus (FS(+)) (three); myoclonic astatic epilepsy (two); generalized epilepsy with tonic-clonic seizures alone (one); partial epilepsy (one); and unclassified epilepsy despite evaluation (two). In three remaining individuals, no information was available. FS were inherited in an autosomal dominant fashion with 75% penetrance. The inheritance of CAE in this family was not simple Mendelian, but suggestive of complex inheritance with the involvement of at least two genes. A GABA(A) receptor gamma2 subunit gene mutation on chromosome 5 segregated with FS, FS(+) and CAE, and also occurred in individuals with the other phenotypes. The clinical and molecular data suggest that the GABA(A) receptor subunit mutation alone can account for the FS phenotype. An interaction of this gene with another gene or genes is required for the CAE phenotype in this family. Linkage analysis for a putative second gene contributing to the CAE phenotype suggested possible loci on chromosomes 10, 13, 14 and 15. Examination of these loci in other absence pedigrees is warranted.


Subject(s)
Epilepsy, Absence/complications , Receptors, GABA-A/genetics , Seizures, Febrile/complications , Adult , Child, Preschool , Chromosomes, Human, Pair 13 , Chromosomes, Human, Pair 14 , Chromosomes, Human, Pair 15 , Electroencephalography , Epilepsy, Absence/genetics , Epilepsy, Absence/physiopathology , Female , Genes, Dominant , Genetic Linkage , Humans , Male , Mutation , Pedigree , Penetrance , Phenotype , Seizures, Febrile/genetics , Seizures, Febrile/physiopathology
20.
Proc Natl Acad Sci U S A ; 99(23): 15170-5, 2002 Nov 12.
Article in English | MEDLINE | ID: mdl-12415111

ABSTRACT

The gamma-aminobutyric acid type A (GABA(A)) receptor mediates fast inhibitory synaptic transmission in the CNS. Dysfunction of the GABA(A) receptor would be expected to cause neuronal hyperexcitability, a phenomenon linked with epileptogenesis. We have investigated the functional consequences of an arginine-to-glutamine mutation at position 43 within the GABA(A) gamma(2)-subunit found in a family with childhood absence epilepsy and febrile seizures. Rapid-application experiments performed on receptors expressed in HEK-293 cells demonstrated that the mutation slows GABA(A) receptor deactivation and increases the rate of desensitization, resulting in an accumulation of desensitized receptors during repeated, short applications. In Xenopus laevis oocytes, two-electrode voltage-clamp analysis of steady-state currents obtained from alpha(1)beta(2)gamma(2) or alpha(1)beta(2)gamma(2)(R43Q) receptors did not reveal any differences in GABA sensitivity. However, differences in the benzodiazepine pharmacology of mutant receptors were apparent. Mutant receptors expressed in oocytes displayed reduced sensitivity to diazepam and flunitrazepam but not the imidazopyridine zolpidem. These results provide evidence of impaired GABA(A) receptor function that could decrease the efficacy of transmission at inhibitory synapses, possibly generating a hyperexcitable neuronal state in thalamocortical networks of epileptic patients possessing the mutant subunit.


Subject(s)
Anti-Anxiety Agents/pharmacology , Epilepsy/genetics , Receptors, GABA-A/physiology , Amino Acid Substitution , Animals , Cell Line , Diazepam/pharmacology , Epilepsy/physiopathology , Flunitrazepam/pharmacology , Humans , Kinetics , Membrane Potentials/drug effects , Membrane Potentials/physiology , Mutagenesis, Site-Directed , Neurons/physiology , Oocytes/drug effects , Oocytes/physiology , Patch-Clamp Techniques , Protein Subunits/genetics , Pyridines/pharmacology , Receptors, GABA-A/genetics , Recombinant Proteins/metabolism , Synapses/physiology , Synaptic Transmission , Transfection , Xenopus , Zolpidem , gamma-Aminobutyric Acid/pharmacology
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