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1.
Alcohol Clin Exp Res ; 41(5): 911-928, 2017 May.
Article in English | MEDLINE | ID: mdl-28226201

ABSTRACT

BACKGROUND: Alcohol dependence (AD) shows evidence for genetic liability, but genes influencing risk remain largely unidentified. METHODS: We conducted a genomewide association study in 706 related AD cases and 1,748 unscreened population controls from Ireland. We sought replication in 15,496 samples of European descent. We used model organisms (MOs) to assess the role of orthologous genes in ethanol (EtOH)-response behaviors. We tested 1 primate-specific gene for expression differences in case/control postmortem brain tissue. RESULTS: We detected significant association in COL6A3 and suggestive association in 2 previously implicated loci, KLF12 and RYR3. None of these signals are significant in replication. A suggestive signal in the long noncoding RNA LOC339975 is significant in case:control meta-analysis, but not in a population sample. Knockdown of a COL6A3 ortholog in Caenorhabditis elegans reduced EtOH sensitivity. Col6a3 expression correlated with handling-induced convulsions in mice. Loss of function of the KLF12 ortholog in C. elegans impaired development of acute functional tolerance (AFT). Klf12 expression correlated with locomotor activation following EtOH injection in mice. Loss of function of the RYR3 ortholog reduced EtOH sensitivity in C. elegans and rapid tolerance in Drosophila. The ryanodine receptor antagonist dantrolene reduced motivation to self-administer EtOH in rats. Expression of LOC339975 does not differ between cases and controls but is reduced in carriers of the associated rs11726136 allele in nucleus accumbens (NAc). CONCLUSIONS: We detect association between AD and COL6A3, KLF12, RYR3, and LOC339975. Despite nonreplication of COL6A3, KLF12, and RYR3 signals, orthologs of these genes influence behavioral response to EtOH in MOs, suggesting potential involvement in human EtOH response and AD liability. The associated LOC339975 allele may influence gene expression in human NAc. Although the functions of long noncoding RNAs are poorly understood, there is mounting evidence implicating these genes in multiple brain functions and disorders.


Subject(s)
Alcoholism/genetics , Ethanol/administration & dosage , Genetic Loci/genetics , Genetic Predisposition to Disease/genetics , Genome-Wide Association Study/methods , Models, Animal , Adult , Alcoholism/diagnosis , Alcoholism/epidemiology , Animals , Caenorhabditis elegans , Case-Control Studies , Drosophila , Female , Genetic Loci/drug effects , Genetic Predisposition to Disease/epidemiology , Humans , Ireland/epidemiology , Male , Mice , Mice, Inbred C57BL , Mice, Inbred DBA , Middle Aged , Rats
2.
Hum Mol Genet ; 23(12): 3316-26, 2014 Jun 15.
Article in English | MEDLINE | ID: mdl-24474471

ABSTRACT

Identifying rare, highly penetrant risk mutations may be an important step in dissecting the molecular etiology of schizophrenia. We conducted a gene-based analysis of large (>100 kb), rare copy-number variants (CNVs) in the Wellcome Trust Case Control Consortium 2 (WTCCC2) schizophrenia sample of 1564 cases and 1748 controls all from Ireland, and further extended the analysis to include an additional 5196 UK controls. We found association with duplications at chr20p12.2 (P = 0.007) and evidence of replication in large independent European schizophrenia (P = 0.052) and UK bipolar disorder case-control cohorts (P = 0.047). A combined analysis of Irish/UK subjects including additional psychosis cases (schizophrenia and bipolar disorder) identified 22 carriers in 11 707 cases and 10 carriers in 21 204 controls [meta-analysis Cochran-Mantel-Haenszel P-value = 2 × 10(-4); odds ratio (OR) = 11.3, 95% CI = 3.7, ∞]. Nineteen of the 22 cases and 8 of the 10 controls carried duplications starting at 9.68 Mb with similar breakpoints across samples. By haplotype analysis and sequencing, we identified a tandem ~149 kb duplication overlapping the gene p21 Protein-Activated Kinase 7 (PAK7, also called PAK5) which was in linkage disequilibrium with local haplotypes (P = 2.5 × 10(-21)), indicative of a single ancestral duplication event. We confirmed the breakpoints in 8/8 carriers tested and found co-segregation of the duplication with illness in two additional family members of one of the affected probands. We demonstrate that PAK7 is developmentally co-expressed with another known psychosis risk gene (DISC1) suggesting a potential molecular mechanism involving aberrant synapse development and plasticity.


Subject(s)
Bipolar Disorder/genetics , Chromosome Duplication , Nerve Tissue Proteins/metabolism , Psychotic Disorders/genetics , Schizophrenia/genetics , p21-Activated Kinases/genetics , p21-Activated Kinases/metabolism , Bipolar Disorder/pathology , Case-Control Studies , Chromosome Breakpoints , DNA Copy Number Variations , Female , Genetic Predisposition to Disease , Genome-Wide Association Study , Humans , Linkage Disequilibrium , Male , Neuronal Plasticity , Psychotic Disorders/pathology , Schizophrenia/pathology , White People/genetics
3.
Hum Mol Genet ; 19(12): 2497-506, 2010 Jun 15.
Article in English | MEDLINE | ID: mdl-20332099

ABSTRACT

Studies of alcohol dependence (AD) have consistently found evidence of linkage on chromosome 4q21-q32. A genome-wide linkage scan in the Irish Affected Sib Pair Study of Alcohol Dependence (IASPSAD) sample also provided its strongest evidence of linkage on chromosome 4q22-q32 using an index of AD severity based on the count of DSM-IV AD symptoms (ADSX; LOD = 4.59). We conducted a systematic, gene-centric association study using 518 LD-tagging single nucleotide polymorphisms (SNPs) in the 65 known and predicted genes within the 1-LOD interval surrounding the linkage peak. Case-only regression analysis with the quantitative variable of ADSX was performed in the 562 genetically independent cases; nominal support for association was demonstrated by 32 tagging SNPs in 14 genes. We did not observe study-wide significance, but gene-wise correction for multiple testing with the Nyholt procedure yielded empirical evidence of association with two genes, DKK2 (dickkopf homolog 2) (P = 0.007) and EGF (epidermal growth factor) (P = 0.025) in the IASPSAD sample. Three SNPs in DKK2 (rs427983; rs419558; rs399087) demonstrated empirical significance. Assessment of possible replication in 847 cases of European descent from a large independent sample, the Collaborative Study of the Genetics of Alcoholism, yielded replication for DKK2 but not EGF. We observed genotypic and phenotypic replication for DKK2 with the three SNPs yielding significant association with ADSX in the IASPSAD sample. Haplotype-specific expression measurements in post-mortem tissue samples suggested a functional role for DKK2. This evidence notwithstanding, replication is needed before confidence can be placed in these findings.


Subject(s)
Alcoholism/genetics , Chromosomes, Human, Pair 4/genetics , Genetic Predisposition to Disease , Intercellular Signaling Peptides and Proteins/genetics , Epidermal Growth Factor/genetics , Female , Genetic Linkage , Genome-Wide Association Study , Haplotypes , Humans , Male , Polymorphism, Single Nucleotide
4.
Compr Psychiatry ; 53(3): 275-9, 2012 Apr.
Article in English | MEDLINE | ID: mdl-21658694

ABSTRACT

BACKGROUND: It is unclear whether direct structured interviews are able to capture the full range of psychopathology in schizophrenia, as is required in diagnostic assessments or clinical ratings. We examined agreement between symptom ratings derived from direct patient interviews and from review of casenotes. METHODS: The study sample comprised 1021 schizophrenic subjects collected as part of the Irish Case-Control Study of Schizophrenia. Diagnostic interviews used a modified version of the Structured Clinical Interview for Diagnostic and Statistical Manual of Mental Disorders, Revised Third Edition. Symptoms were rated by the interviewer. In addition, the Casenote Rating Scale was used to rate symptoms based on medical record information. For each negative and positive symptom, we calculated the Pearson correlation between the interview and the casenote rating. Using the mean of the interview and casenote rating for each symptom, exploratory factor analysis using Varimax rotation was performed. RESULTS: Three factors were extracted in factor analysis: positive, negative, and Schneiderian symptoms. The highest correlations between interview and casenote ratings were for negative symptoms, in which all symptoms were significantly correlated. Positive and Schneiderian symptoms were significantly correlated with the exception of thought insertion, thought withdrawal, voices speaking in sentences, and somatic hallucinations. Significant correlations were generally moderate (0.2-0.55). CONCLUSION: Most schizophrenic symptoms, especially negative symptoms, can be assessed by direct interviews as the sole source of information with moderate reliability. However, the presence of some Schneiderian and possibly less prevalent positive symptoms may be difficult to determine without a review of records, which may include longitudinal observations and information from multiple observers.


Subject(s)
Interview, Psychological/standards , Medical Records/standards , Schizophrenia/diagnosis , Factor Analysis, Statistical , Female , Hallucinations/diagnosis , Hallucinations/psychology , Humans , Male , Schizophrenic Psychology
5.
Alcohol Clin Exp Res ; 35(3): 496-505, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21143246

ABSTRACT

BACKGROUND: Depressive symptoms are common among individuals with alcohol use disorders and impact treatment outcome. Substantial overlap exists among the neurobiological systems proposed in the pathophysiology of depressive and alcohol use disorders; however, specific genetic effects contributing to risk for depressive comorbidity remain poorly understood. METHODS: This study examines the association of depressive symptom scores for lifetime depression (the sum of DSM-IV major depression co-endorsed criteria for lifetime depression) with markers in 120 candidate genes in 554 alcohol-dependent individuals. The candidate genes code for molecules involved in dopamine, serotonin, glutamate, gamma-aminobutyric acid (GABA), and opioid neurotransmission, cell signaling, pharmacokinetics, stress biology, and behavioral control. Analyses were conducted at the single marker level with experimentwise permutation to control for multiple testing. RESULTS: Results revealed nominal associations for markers in 20 genes. Following experimentwise permutation, markers in the corticotropin-releasing hormone-binding protein (CRHBP) the µ-opioid receptor (OPRM1) and the ß1 subunit of GABA A (GABA(A)) receptors (GABRB1) met or exceeded the significance threshold. None of the markers associated with depressive symptom scores were significantly associated with alcohol dependence symptom scores. CONCLUSION: These findings suggest potential risk genes for depressive symptoms in alcohol-dependent individuals.


Subject(s)
Alcoholism/genetics , Depression/diagnosis , Depression/genetics , Genotype , Neurotransmitter Agents/genetics , Adult , Alcoholism/epidemiology , Depression/epidemiology , Diagnostic and Statistical Manual of Mental Disorders , Female , Humans , Male , Middle Aged , Polymorphism, Single Nucleotide
6.
Alcohol Clin Exp Res ; 35(2): 376-85, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21083670

ABSTRACT

BACKGROUND: Over 50 years of evidence from research has established that the central dopaminergic reward pathway is likely involved in alcohol dependence (AD). Additional evidence supports a role for dopamine (DA) in other disinhibitory psychopathology, which is often comorbid with AD. Family and twin studies demonstrate that a common genetic component accounts for most of the genetic variance in these traits. Thus, DA-related genes represent putative candidates for the genetic risk that underlies not only AD but also behavioral disinhibition. Many linkage and association studies have examined these relationships with inconsistent results, possibly because of low power, poor marker coverage, and/or an inappropriate correction for multiple testing. METHODS: We conducted an association study on the products encoded by 10 DA-related genes (DRD1-D5, SLC18A2, SLC6A3, DDC, TH, COMT) using a large, ethnically homogeneous sample with severe AD (n = 545) and screened controls (n = 509). We collected genotypes from linkage disequilibrium (LD)-tagging single nucleotide polymorphisms (SNPs) and employed a gene-based method of correction. We tested for association with AD diagnosis in cases and controls and with a variety of alcohol-related traits (including age-at-onset, initial sensitivity, tolerance, maximum daily drinks, and a withdrawal factor score), disinhibitory symptoms, and a disinhibitory factor score in cases only. A total of 135 SNPs were genotyped using the Illumina GoldenGate and Taqman Assays-on-Demand protocols. RESULTS: Of the 101 SNPs entered into standard analysis, 6 independent SNPs from 5 DA genes were associated with AD or a quantitative alcohol-related trait. Two SNPs across 2 genes were associated with a disinhibitory symptom count, while 1 SNP in DRD5 was positive for association with the general disinhibitory factor score. CONCLUSIONS: Our study provides evidence of modest associations between a small number of DA-related genes and AD as well as a range of alcohol-related traits and measures of behavioral disinhibition. While we did conduct gene-based correction for multiple testing, we did not correct for multiple traits because the traits are correlated. However, false-positive findings remain possible, so our results must be interpreted with caution.


Subject(s)
Alcoholism/genetics , Alcoholism/psychology , Dopamine/genetics , Inhibition, Psychological , Mental Disorders/etiology , Polymorphism, Single Nucleotide , White People/genetics , Age of Onset , Genotype , Humans , Linkage Disequilibrium , Mental Disorders/psychology , Phenotype , Siblings , Sympathomimetics
7.
PLoS Genet ; 4(2): e28, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18282107

ABSTRACT

Sex differences in schizophrenia are well known, but their genetic basis has not been identified. We performed a genome-wide association scan for schizophrenia in an Ashkenazi Jewish population using DNA pooling. We found a female-specific association with rs7341475, a SNP in the fourth intron of the reelin (RELN) gene (p = 2.9 x 10(-5) in women), with a significant gene-sex effect (p = 1.8 x 10(-4)). We studied rs7341475 in four additional populations, totaling 2,274 cases and 4,401 controls. A significant effect was observed only in women, replicating the initial result (p = 2.1 x 10(-3) in women; p = 4.2 x 10(-3) for gene-sex interaction). Based on all populations the estimated relative risk of women carrying the common genotype is 1.58 (p = 8.8 x 10(-7); p = 1.6 x 10(-5) for gene-sex interaction). The female-specific association between RELN and schizophrenia is one of the few examples of a replicated sex-specific genetic association in any disease.


Subject(s)
Cell Adhesion Molecules, Neuronal/genetics , Extracellular Matrix Proteins/genetics , Genetic Variation , Nerve Tissue Proteins/genetics , Schizophrenia/genetics , Serine Endopeptidases/genetics , Adult , Alleles , Asian People/genetics , Case-Control Studies , Female , Gene Frequency , Genetic Predisposition to Disease , Genome, Human , Humans , Introns , Jews/genetics , Male , Middle Aged , Odds Ratio , Polymorphism, Single Nucleotide , Reelin Protein , Risk Factors , Schizophrenia/etiology , Sex Characteristics , White People/genetics
8.
Am J Med Genet B Neuropsychiatr Genet ; 153B(2): 700-705, 2010 Mar 05.
Article in English | MEDLINE | ID: mdl-19760674

ABSTRACT

Robust associations between the dysbindin gene (DTNBP1) and schizophrenia have been demonstrated in many but not all samples, and evidence that this gene particularly predisposes to negative symptoms in this illness has been presented. The current study sought to replicate the previously reported negative symptom associations in an Irish case-control sample. Association between dysbindin and schizophrenia has been established in this cohort, and a factor analysis of the assessed symptoms yielded three factors, Positive, Negative, and Schneiderian. The sequential addition method was applied using UNPHASED to assess the relationship between these symptom factors and the high-risk haplotype. No associations were detected for any of the symptom factors indicating that the dysbindin risk haplotype does not predispose to a particular group of symptoms in this sample. Several possibilities, such as differing risk haplotypes, may explain this finding.


Subject(s)
Carrier Proteins/genetics , Genetic Predisposition to Disease , Schizophrenia/genetics , Alleles , Case-Control Studies , Dysbindin , Dystrophin-Associated Proteins , Family Health , Haplotypes , Humans , Ireland , Models, Genetic , Polymorphism, Single Nucleotide , Regression Analysis , Risk
9.
Schizophr Res ; 107(2-3): 249-54, 2009 Feb.
Article in English | MEDLINE | ID: mdl-18973992

ABSTRACT

To replicate previous association between TAAR6 and schizophrenia, including our own finding in the Irish Study of High Density Schizophrenia Families (ISHDSF) sample, we genotyped 12 single nucleotide polymorphisms (SNPs) in the Irish Case-Control Study of Schizophrenia (ICCSS) sample. Only rs9389020 provided nominal evidence for association (p<0.0228), which did not withstand the permutation testing (p<0.2196). The combined odds ratio from ISHDSF and ICCSS samples [OR (95%CI)=1.0564 (1.0078-1.1074); p=0.02], while nominally significant, did not survive correction for multiple testing. Here we demonstrate that TAAR6 is not associated with schizophrenia in the ICCSS sample.


Subject(s)
Alleles , Cell Cycle Proteins/genetics , Genotype , Nuclear Proteins/genetics , Polymorphism, Single Nucleotide/genetics , Psychotic Disorders/genetics , Schizophrenia/genetics , Adult , Case-Control Studies , Chromosomes, Human, Pair 6/genetics , Female , Genetic Markers/genetics , Haplotypes , Health Surveys , Humans , Ireland , Linkage Disequilibrium/genetics , Male , Middle Aged , Northern Ireland , Odds Ratio , Psychotic Disorders/diagnosis , Receptors, G-Protein-Coupled , Schizophrenia/diagnosis
10.
Schizophr Res ; 109(1-3): 94-7, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19268543

ABSTRACT

We tested four genes [phenylalanine hydroxylase (PAH), the serotonin transporter (SLC6A4), monoamine oxidase B (MAOB), and the gamma-aminobutyric acid A receptor beta-3 subunit (GABRB3)] for their impact on five schizophrenia symptom factors: delusions, hallucinations, mania, depression, and negative symptoms. In a 90 family subset of the Irish Study of High Density Schizophrenia Families, the PAH 232 bp microsatellite allele demonstrated significant association with the delusions factor using both QTDT (F=8.0, p=.031) and QPDTPHASE (chi-square=12.54, p=.028). Also, a significant association between the GABRB3 191 bp allele and the hallucinations factor was detected using QPDTPHASE (chi-square=15.51, p=.030), but not QTDT (chi-square=2.07, p=.560).


Subject(s)
Monoamine Oxidase/genetics , Phenylalanine Hydroxylase/genetics , Polymorphism, Genetic , Psychotic Disorders/genetics , Serotonin Plasma Membrane Transport Proteins/genetics , Delusions/genetics , Family , Gene Frequency , Genetic Markers/genetics , Genetic Predisposition to Disease/genetics , Genetic Variation , Genome-Wide Association Study , Genotype , Hallucinations/genetics , Humans , Membrane Transport Proteins/genetics , Polymorphism, Single Nucleotide , Psychotic Disorders/diagnosis , Psychotic Disorders/psychology , Receptors, GABA/genetics , Schizophrenia/diagnosis , Schizophrenia/genetics
11.
Am J Med Genet B Neuropsychiatr Genet ; 150B(3): 411-7, 2009 Apr 05.
Article in English | MEDLINE | ID: mdl-18712714

ABSTRACT

Genetic variation in the serotonin 2A receptor (HTR2A) has been associated with both schizophrenia and suicidal behavior. Our sample comprised 270 Irish high-density schizophrenia families (n = 1,408 subjects, including 755 with psychotic illness). Diagnoses were generated using a modified SCID. All patients who had at least one episode of psychosis were rated on the Operation Criteria Checklist for Psychotic Illness (OPCRIT). Lifetime history of suicidal ideation was determined from medical records and psychiatric interviews and was scored in the OPCRIT. Twelve SNPs were selected for study. Ten of these were tagSNPs derived from HapMap data, along with His452Tyr and T102C. We tested for association with psychotic illness as a whole, as well as stratified by the presence of suicidal ideation, using FBAT and PDTPHASE. Single-marker as well as haplotype-based tests using a "sliding window" approach were performed. We observed several 2, 3, and 4 marker haplotypes near the 3' end of the gene that were over-transmitted to psychotic subjects (0.02

Subject(s)
Family , Genetic Variation , Receptor, Serotonin, 5-HT2A/genetics , Schizophrenia/genetics , Suicide/psychology , Genetic Markers , Genetic Predisposition to Disease , Genetics, Population , Haplotypes , Humans , Ireland , Polymorphism, Single Nucleotide , Psychotic Disorders/complications , Psychotic Disorders/genetics , Schizophrenia/complications , Schizophrenia/diagnosis , White People/genetics
12.
Ir J Med Sci ; 188(2): 641-647, 2019 May.
Article in English | MEDLINE | ID: mdl-29987493

ABSTRACT

This paper reviews data on admissions to Irish psychiatric units and hospitals for those suffering from organic mental disorders, in particular dementia, over the course of the last half century. Admission and census data from the National Psychiatric In-patient Reporting System (NPIRS) from 1963 to 2016 are examined and discussed in light of Ireland's ageing population. The NPIRS database was established in the 1960s to record admission and discharge activity in Irish psychiatric units and hospitals. Admission data from the database are presented in 5-yearly intervals from 1965 to 2015, while census data are presented for 1963 and 2016.


Subject(s)
Dementia/psychology , Aged , Aged, 80 and over , Dementia/pathology , Dementia/therapy , Female , Hospitals, Psychiatric , Humans , Male , Mental Disorders/epidemiology
13.
Schizophr Res ; 106(2-3): 200-7, 2008 Dec.
Article in English | MEDLINE | ID: mdl-18799291

ABSTRACT

BACKGROUND: : The histidine triad nucleotide-binding protein 1, HINT1, hydrolyzes adenosine 5'-monophosphoramidate substrates such as AMP-morpholidate. The human HINT1 gene is located on chromosome 5q31.2, a region implicated in linkage studies of schizophrenia. HINT1 had been shown to have different expression in postmortem brains between schizophrenia patients and unaffected controls. It was also found to be associated with the dysregulation of postsynaptic dopamine transmission, thus suggesting a potential role in several neuropsychiatric diseases. METHODS: : In this work, we studied 8 SNPs around the HINT1 gene region using the Irish study of high density schizophrenia families (ISHDSF, 1350 subjects and 273 pedigrees) and the Irish case control study of schizophrenia (ICCSS, 655 affected subjects and 626 controls). The expression level of HINT1 was compared between the postmortem brain cDNAs from schizophrenic patients and unaffected controls provided by the Stanley Medical Research Institute. RESULTS: : We found nominally significant differences in allele frequencies in several SNPs for both ISHDSF and ICCSS samples in sex-stratified analyses. However, the sex effect differed between the two samples. In expression studies, no significant difference in expression was observed between patients and controls. However, significant interactions amongst sex, diagnosis and rs3864283 genotypes were observed. CONCLUSION: : Data from both association and expression studies suggested that variants at HINT1 may be associated with schizophrenia and the associations may be sex-specific. However, the markers showing associations were in high LD to the SPEC2/PDZ-GEF2/ACSL6 locus reported previously in the same samples. This made it difficult to separate the association signals amongst these genes. Other independent studies may be necessary to distinguish these candidate genes.


Subject(s)
Nerve Tissue Proteins/genetics , Schizophrenia/genetics , Adult , Case-Control Studies , Chromosome Mapping , Female , Gene Expression , Gene Frequency , Genetic Markers/genetics , Genetic Predisposition to Disease/genetics , Genotype , Humans , Ireland/ethnology , Linkage Disequilibrium , Male , Middle Aged , Polymorphism, Single Nucleotide , White People/genetics
14.
Schizophr Res ; 106(2-3): 208-17, 2008 Dec.
Article in English | MEDLINE | ID: mdl-18804346

ABSTRACT

Schizophrenia is a common psychotic mental disorder that is believed to result from the effects of multiple genetic and environmental factors. In this study, we explored gene-gene interactions and main effects in both case-control (657 cases and 411 controls) and family-based (273 families, 1,350 subjects) datasets of English or Irish ancestry. Fifty three markers in 8 genes were genotyped in the family sample and 44 markers in 7 genes were genotyped in the case-control sample. The Multifactor Dimensionality Reduction Pedigree Disequilibrium Test (MDR-PDT) was used to examine epistasis in the family dataset and a 3-locus model was identified (permuted p=0.003). The 3-locus model involved the IL3 (rs2069803), RGS4 (rs2661319), and DTNBP1 (rs2619539) genes. We used MDR to analyze the case-control dataset containing the same markers typed in the RGS4, IL3 and DTNBP1 genes and found evidence of a joint effect between IL3 (rs31400) and DTNBP1 (rs760761) (cross-validation consistency 4/5, balanced prediction accuracy=56.84%, p=0.019). While this is not a direct replication, the results obtained from both the family and case-control samples collectively suggest that IL3 and DTNBP1 are likely to interact and jointly contribute to increase risk for schizophrenia. We also observed a significant main effect in DTNBP1, which survived correction for multiple comparisons, and numerous nominally significant effects in several genes.


Subject(s)
Carrier Proteins/genetics , Interleukin-3/genetics , Schizophrenia/genetics , Carrier Proteins/physiology , Chromosomes, Human, Pair 5/genetics , Dysbindin , Dystrophin-Associated Proteins , Female , Gene Frequency , Genetic Markers , Genetic Predisposition to Disease/genetics , Genotype , Haplotypes , Humans , Interleukin-3/physiology , Male , Models, Genetic , Pedigree , Polymorphism, Single Nucleotide , Risk Factors , Schizophrenia/physiopathology
15.
Alcohol Clin Exp Res ; 32(5): 785-95, 2008 May.
Article in English | MEDLINE | ID: mdl-18331377

ABSTRACT

BACKGROUND: The genes coding for ethanol metabolism enzymes [alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH)] have been widely studied for their influence on the risk to develop alcohol dependence (AD). However, the relation between polymorphisms of these metabolism genes and AD in Caucasian subjects has not been clearly established. The present study examined evidence for the association of alcohol metabolism genes with AD in the Irish Affected Sib Pair Study of alcohol dependence. METHODS: We conducted a case-control association study with 575 independent subjects who met Diagnostic and Statistical Manual of Mental Disorders, 4th Edition, AD diagnosis and 530 controls. A total of 77 single nucleotide polymorphisms (SNPs) in the seven ADH (ADH1-7) and two ALDH genes (ALDH1A1 and ALDH2) were genotyped using the Illumina GoldenGate protocols. Several statistical procedures were implemented to control for false discoveries. RESULTS: All markers with minor allele frequency greater than 0.01 were in Hardy-Weinberg equilibrium. Numerous SNPs in ADH genes showed association with AD, including one marker in the coding region of ADH1C (rs1693482 in exon6, Ile271Gln). Haplotypic association was observed in the ADH5 and ADH1C genes, and in a long haplotype block formed by the ADH1A and ADH1B loci. We detected two significant interactions between pairs of markers in intron 6 of ADH6 and intron 12 of ALDH2 (p = 5 x 10(-5)), and 5' of both ADH4 and ADH1A (p = 2 x 10(-4)). CONCLUSION: We found evidence for the association of several ADH genes with AD in a sample of Western European origin. The significant interaction effects between markers in ADH and ALDH genes suggest possible epistatic roles between alcohol metabolic enzymes in the risk for AD.


Subject(s)
Alcohol Dehydrogenase/genetics , Alcoholism/genetics , Aldehyde Dehydrogenase/genetics , Aldehyde Dehydrogenase 1 Family , Aldehyde Dehydrogenase, Mitochondrial , Case-Control Studies , Epistasis, Genetic , Genotype , Haplotypes , Humans , Ireland , Linkage Disequilibrium , Multigene Family , Polymorphism, Single Nucleotide , Retinal Dehydrogenase
16.
Drug Alcohol Depend ; 93(3): 210-6, 2008 Mar 01.
Article in English | MEDLINE | ID: mdl-18023296

ABSTRACT

BACKGROUND: A comprehensive understanding of the etiology and neurobiology of nicotine dependence is not available. We sought to identify genomic regions that might contain etiologically-relevant loci using genomewide univariate and bivariate linkage analyses. METHODS: We conducted secondary data analyses of 626 all possible sibling pairs ascertained in Ireland and Northern Ireland on the basis of alcohol dependence. A set of 1020 short tandem repeat genetic markers were genotyped in all subjects. The phenotypes analyzed were the Fagerström Test for Nicotine Dependence (FTND), a history of nicotine dependence, the number of symptoms of alcohol dependence (AlcSx), and a history of alcohol dependence. Genomewide linkage analyses were conducted with non-parametric and variance components methods. FINDINGS: For the bivariate variance component analysis of the continuous FTND and AlcSx scores, multipoint LOD scores were >4 in two genomic regions--an 11cM region on chr7 (D7S2252-D7S691, empirical p=0.0006) and an 8cM region on chr18 flanking D18S63 (empirical p=0.0007). These findings did not exceed a conservative estimate of study-wide significance. The remaining sets of findings had considerably smaller or less consistent peak signals. Notably, strong linkage signal at D4S1611 for AlcSx from a prior report (PMID 16534506) was not found when jointly analyzed with FTND. INTERPRETATION: Replication is required. However, chromosomes 7 and 18 may contain genetic loci relevant to the etiology of nicotine-related phenotypes.


Subject(s)
Tobacco Use Disorder/genetics , Tobacco Use Disorder/psychology , Adult , Aged , Alcoholism/complications , Alcoholism/epidemiology , Chromosomes, Human, Pair 18/genetics , Chromosomes, Human, Pair 7/genetics , Data Collection , Female , Genetic Linkage/genetics , Humans , Ireland/epidemiology , Linkage Disequilibrium , Lod Score , Male , Middle Aged , Northern Ireland/epidemiology , Phenotype , Tandem Repeat Sequences , Tobacco Use Disorder/complications
17.
Psychiatr Serv ; 59(5): 570-3, 2008 May.
Article in English | MEDLINE | ID: mdl-18451020

ABSTRACT

OBJECTIVE: Although mental health reforms in the 20th century were characterized by deinstitutionalization, previous research suggested a new era of reinstitutionalization in six European countries between 1990 and 2002. This study aimed to establish whether there has been a trend in Europe toward more institutionalized care since 2002. METHODS: Primary data sources were used to collect data on conventional inpatient beds, involuntary hospital admissions, forensic beds, places in residential care and supervised and supported housing, and the prison population in nine countries: Austria, Denmark, England, Germany, Republic of Ireland, Italy, the Netherlands, Spain, and Switzerland. RESULTS: Between 2002 and 2006 the number of conventional psychiatric inpatient beds tended to fall and changes in involuntary admissions were inconsistent. The number of forensic beds, places in supervised and supported housing, and the prison population increased in most, but not all, of the countries studied. CONCLUSIONS: The findings suggest an ongoing although not consistent trend toward increasing provision of institutionalized mental health care across Europe.


Subject(s)
Hospitals, Psychiatric/organization & administration , Mental Health Services/organization & administration , Europe/epidemiology , Humans , Institutionalization/statistics & numerical data
18.
Am J Med Genet B Neuropsychiatr Genet ; 147B(7): 1231-7, 2008 Oct 05.
Article in English | MEDLINE | ID: mdl-18404645

ABSTRACT

FBXL21 gene encodes an F-box containing protein functioning in the SCF ubiquitin ligase complex. The role of the F-box protein is to recruit proteins designated for degradation to the ligase complex so they would be ubiquitinated. Using both family and case-control samples, we found consistent associations in and around FBXL21 gene. In the family sample (Irish study of high density schizophrenia families, ISHDSF, 1,350 subjects from 273 families), a minimal PDT P-value of 0.0011 was observed at rs31555. In the case-control sample (Irish case-control study of schizophrenia, ICCSS, 814 cases and 625 controls), significant associations were observed at two markers (rs1859427 P = 0.0197, and rs6861170 P = 0.0197). In haplotype analyses, haplotype 1-1 (C-T) of rs1859427-rs6861170 was overtransmitted in the ISHDSF (P = 0.0437) and was overrepresented in the ICCSS (P = 0.0177). For both samples, the associated alleles and haplotypes were identical. These data suggested that FBXL21 may be associated with schizophrenia in the Irish samples.


Subject(s)
F-Box Proteins/genetics , Genetic Predisposition to Disease/genetics , Schizophrenia/genetics , Adult , Aged , Aged, 80 and over , Alleles , Case-Control Studies , Family Health , Female , Genetic Predisposition to Disease/epidemiology , Haplotypes , Humans , Ireland/epidemiology , Male , Middle Aged , Polymorphism, Single Nucleotide , Schizophrenia/epidemiology
19.
BMC Psychiatry ; 6: 39, 2006 Sep 19.
Article in English | MEDLINE | ID: mdl-16984637

ABSTRACT

BACKGROUND: This article systematically monitors the quality of life (QOL) of patients with schizophrenia from seven different sites across four European countries: France, Ireland, Portugal and Spain. METHODS: A one-year prospective cohort study was carried out. Inclusion criteria for patients were: a clinical lifetime diagnosis of schizophrenia according to ICD-10 (F20) diagnostic criteria for research, age between 18 and 65 years and at least one contact with mental health services in 1993. Data concerning QOL were recorded in seven sites from four countries: France, Portugal, Ireland and Spain, and were obtained using the Baker and Intagliata scale. At baseline, 339 patients answered the QOL questionnaire. At one-year follow-up, Spain could not participate, so only 263 patients were contacted and 219 agreed to take part. QOL was compared across centres by areas and according to a global index. QOL was correlated with presence of clinical and social problems, needs for care and interventions provided during the one-year follow-up. RESULTS: We did not find any link between gender and QOL. There were some significant differences between centres concerning many items. What is more, these differences were relative: in Lisbon where the lowest level of satisfaction was recorded, people were satisfied with food but highly dissatisfied with finances, whereas in St Etienne, where the highest level of satisfaction was recorded, people were less satisfied with food when they were more satisfied with finances. The evolution in one year among those respondents who took part in the follow-up (excluding the subjects from Granada) showed different patterns depending on the items. CONCLUSION: The four countries have different resources and patients live in rather different conditions. However, the main differences as far as their QOL is concerned very much depend on extra-psychiatric variables, principally marital status and income.


Subject(s)
Quality of Life , Schizophrenia/complications , Schizophrenic Psychology , Adult , Europe , Female , Humans , Income , Male , Marriage , Needs Assessment , Patient Satisfaction , Prospective Studies
20.
Article in English | MEDLINE | ID: mdl-16965621

ABSTRACT

BACKGROUND: This article compares needs for care among patients with schizophrenia across six European countries and examines how this relates to the diversity of psychiatric systems in Europe. METHODS: A one-year prospective cohort study was set up. Inclusion criteria for patients were: a clinical lifetime diagnosis of schizophrenia according to ICD-10 (F20) diagnostic criteria for research, age between 18 and 65 years and at least one contact with mental health services in 1993. The patients were assessed for their clinical diagnosis and symptoms using the SCAN interview (Schedules for Clinical Assessment in Neuropsychiatry) and the interventions proposed to them were recorded through the systematic use of the NFCAS (Needs For Care Assessment Schedule). RESULTS: 438 patients were included and 391 were followed up. The mean age was 38 years, the mean age at onset was 22 years, and 59% were out-patients, 24% in day care and 15% hospitalized. The populations in the different centres were significantly different for almost all the variables: sociodemographic, clinical and social, and the problems identified remained relatively stable over the year. Comparisons highlighted cultural differences concerning the interventions that were proposed. Centres in Italy, Spain and Portugal proposed many interventions even though they were relatively deprived in terms of resources, and the tendency seems to be the reverse for the Northern European countries. On average, one in four patients suffered from needs that were not adequately met by the mental health service in their region. These needs (on average 6 per patient) varied from psychotic symptoms to managing their own affairs. The number of interventions was not correlated to the need status. The availability of community-based treatment, rehabilitation and residential care seems to predict smaller proportions of patients with unmet needs. CONCLUSION: There appeared to be a systematic relationship between the availability of community-based mental health care and the need status of schizophrenic patients: the fewer out-patient and rehabilitation services available, the more unmet needs there were.

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